Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33541 * 125.48562 * 2 1 4 4 C 1.30133 * 109.71896 * 179.97438 * 3 2 1 5 5 N 1.34897 * 107.99580 * 0.12231 * 4 3 2 6 6 N 1.31061 * 125.48925 * 180.02562 * 2 1 3 7 7 C 1.46345 * 124.06831 * 179.77466 * 5 4 3 8 8 C 1.53445 * 108.22148 * 343.73708 * 7 5 4 9 9 N 1.46984 * 109.64693 * 49.43104 * 8 7 5 10 10 C 1.46903 * 110.99983 * 165.43419 * 9 8 7 11 11 C 1.53002 * 109.47242 * 58.17021 * 10 9 8 12 12 C 1.52995 * 109.46794 * 180.02562 * 11 10 9 13 13 S 1.81007 * 109.46911 * 180.02562 * 12 11 10 14 14 C 1.76198 * 99.99990 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99979 * 359.97438 * 14 13 12 16 16 C 1.38795 * 119.99911 * 179.97438 * 14 13 12 17 17 N 1.31631 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47283 * 90.00265 * 18 16 14 20 20 H 1.48502 * 109.47224 * 210.00364 * 18 16 14 21 21 H 1.48502 * 109.47213 * 330.00302 * 18 16 14 22 22 C 1.47356 * 111.20296 * 289.53294 * 9 8 7 23 23 H 1.08996 * 109.47155 * 269.98324 * 1 2 3 24 24 H 1.09003 * 109.46874 * 29.98353 * 1 2 3 25 25 H 1.09001 * 109.46832 * 149.97838 * 1 2 3 26 26 H 1.08999 * 109.71455 * 224.04936 * 7 5 4 27 27 H 1.09004 * 109.74868 * 103.44278 * 7 5 4 28 28 H 1.08995 * 109.44349 * 289.37395 * 8 7 5 29 29 H 1.09001 * 109.44409 * 169.48376 * 8 7 5 30 30 H 1.09003 * 109.47074 * 178.16705 * 10 9 8 31 31 H 1.08996 * 109.47138 * 298.16472 * 10 9 8 32 32 H 1.09003 * 109.46828 * 299.99835 * 11 10 9 33 33 H 1.08995 * 109.47017 * 59.99877 * 11 10 9 34 34 H 1.09003 * 109.47197 * 299.99485 * 12 11 10 35 35 H 1.08995 * 109.47540 * 60.00074 * 12 11 10 36 36 H 0.97005 * 120.00371 * 179.97438 * 17 16 14 37 37 H 1.08991 * 109.73700 * 169.71071 * 22 9 8 38 38 H 1.08998 * 109.73976 * 290.41623 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2823 1.0874 0.0000 4 6 3.5346 0.7338 0.0005 5 7 3.5871 -0.6142 -0.0018 6 7 2.2679 -1.0671 -0.0005 7 6 4.8304 -1.3862 -0.0068 8 6 5.9749 -0.4500 -0.4169 9 7 5.9177 0.7809 0.3845 10 6 7.1707 1.5397 0.2740 11 6 7.4341 1.8782 -1.1947 12 6 8.7394 2.6680 -1.3098 13 16 9.0506 3.0692 -3.0472 14 6 10.5676 3.9517 -2.8904 15 1 11.0109 4.0946 -1.9161 16 6 11.1927 4.4632 -4.0191 17 7 10.6521 4.2894 -5.2067 18 14 12.8005 5.3995 -3.8529 19 1 13.9386 4.4512 -3.9568 20 1 12.8986 6.4109 -4.9358 21 1 12.8426 6.0806 -2.5340 22 6 4.7619 1.6117 0.0035 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 4.7515 -2.2055 -0.7213 27 1 5.0204 -1.7847 0.9898 28 1 5.8782 -0.1999 -1.4733 29 1 6.9295 -0.9485 -0.2485 30 1 7.0894 2.4613 0.8503 31 1 7.9940 0.9401 0.6620 32 1 7.5154 0.9566 -1.7710 33 1 6.6107 2.4779 -1.5826 34 1 8.6585 3.5896 -0.7334 35 1 9.5625 2.0680 -0.9220 36 1 11.0887 4.6472 -5.9955 37 1 4.6352 2.4190 0.7246 38 1 4.9194 2.0275 -0.9917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267332639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = 83.519652 kcal Electronic energy + Delta-G solvation = -19266.777599 eV Core-core repulsion = 16271.944601 eV Total energy + Delta-G solvation = -2994.832998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.45365 -38.80752 -34.89165 -32.91452 -32.48499 -32.02172 -30.27558 -28.75692 -26.63503 -25.63503 -24.38628 -23.35667 -21.48913 -20.74445 -19.32984 -17.54994 -17.16996 -16.67609 -15.76759 -15.58880 -14.89604 -14.85225 -14.66678 -14.27349 -14.13539 -13.62327 -13.28687 -13.10012 -12.94982 -12.65486 -12.33767 -12.16044 -11.95850 -11.89648 -11.59024 -11.41049 -11.10647 -10.89348 -10.76311 -10.50944 -10.14554 -9.96161 -9.75330 -9.38317 -9.11212 -8.64579 -8.35199 -6.60752 -6.28254 -3.99653 1.47660 2.12496 2.73123 3.16975 3.18440 3.25362 3.27509 3.50597 3.81342 4.12708 4.16946 4.50204 4.58358 4.73881 4.92074 5.02272 5.05860 5.08396 5.13859 5.23805 5.29723 5.34680 5.36942 5.48471 5.49743 5.56788 5.61696 5.68996 5.90665 6.15749 6.19015 6.31623 6.33195 6.50493 6.56962 6.59072 6.68831 7.55237 8.01553 8.31112 9.18244 10.79913 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039974 B = 0.002839 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.288171 B = 9859.974042 C =10094.250923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.214 3.786 3 N -0.536 5.536 4 C 0.286 3.714 5 N -0.372 5.372 6 N -0.318 5.318 7 C 0.135 3.865 8 C 0.031 3.969 9 N -0.538 5.538 10 C 0.060 3.940 11 C -0.139 4.139 12 C -0.109 4.109 13 S -0.137 6.137 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.126 3.874 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 -9.780 11.495 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 N -0.265 5.265 4 C 0.009 3.991 5 N -0.163 5.163 6 N -0.147 5.147 7 C 0.013 3.987 8 C -0.099 4.099 9 N -0.262 5.262 10 C -0.069 4.069 11 C -0.178 4.178 12 C -0.259 4.259 13 S 0.092 5.908 14 C -0.664 4.664 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.004 4.004 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.232 -10.616 10.865 20.816 hybrid contribution 2.171 1.064 0.249 2.431 sum -12.061 -9.552 11.114 18.980 Atomic orbital electron populations 1.20059 0.83894 1.03944 1.03564 1.24436 0.98201 0.85384 0.98750 1.70044 0.99752 1.30934 1.25779 1.24141 0.94780 0.83943 0.96279 1.50170 1.05569 1.06041 1.54569 1.77826 0.86779 1.22655 1.27457 1.22043 0.78136 0.94410 1.04152 1.22615 0.98713 0.91492 0.97036 1.62472 1.03506 1.05988 1.54243 1.22357 0.89611 0.98501 0.96403 1.21992 0.98265 1.00906 0.96684 1.23160 0.98065 1.01209 1.03448 1.84658 1.32045 1.72053 1.02089 1.22668 1.07559 1.40150 0.96067 0.90890 1.25025 0.98298 0.95924 0.94559 1.70019 1.38805 1.43657 0.98044 0.86157 0.81979 0.79275 0.78082 1.20256 1.20730 1.19640 1.20899 0.82843 0.93409 1.03277 0.89997 0.89565 0.90145 0.88325 0.88759 0.92295 0.87159 0.89703 0.89585 0.91323 0.91329 0.91905 0.91958 0.92258 0.86469 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.21 2.84 8.15 -156.29 -1.27 1.57 16 3 N -0.54 -7.78 11.18 -7.99 -0.09 -7.87 16 4 C 0.29 3.81 7.83 -155.76 -1.22 2.59 16 5 N -0.37 -4.79 4.07 -58.19 -0.24 -5.02 16 6 N -0.32 -4.47 12.76 32.53 0.41 -4.05 16 7 C 0.13 1.24 7.54 -3.90 -0.03 1.21 16 8 C 0.03 0.28 4.62 -3.55 -0.02 0.26 16 9 N -0.54 -5.48 4.86 -235.20 -1.14 -6.62 16 10 C 0.06 0.63 5.30 -3.82 -0.02 0.61 16 11 C -0.14 -1.92 4.56 -26.73 -0.12 -2.04 16 12 C -0.11 -2.01 5.67 37.16 0.21 -1.79 16 13 S -0.14 -3.43 21.44 -107.50 -2.30 -5.74 16 14 C -0.52 -14.42 9.50 30.94 0.29 -14.12 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 1.98 5.49 -17.43 -0.10 1.89 16 17 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 18 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.13 1.39 5.71 -4.63 -0.03 1.37 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.59 7.08 -51.93 -0.37 0.22 16 29 H 0.11 0.80 8.00 -51.93 -0.42 0.38 16 30 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.09 0.85 8.12 -51.93 -0.42 0.42 16 32 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 33 H 0.07 0.99 6.45 -51.93 -0.33 0.65 16 34 H 0.06 1.14 8.14 -51.91 -0.42 0.72 16 35 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 0.95 6.27 -51.93 -0.33 0.63 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -33.65 325.30 -10.23 -43.88 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.56 Total: -2.13 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.92 Total: -8.56 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.32 Total: -48.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.65 -10.23 -43.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267332639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.399 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds