Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46962 * 2 1 4 4 C 1.37101 * 119.99967 * 263.55803 * 3 2 1 5 5 H 1.08005 * 119.99766 * 188.39460 * 4 3 2 6 6 C 1.38948 * 120.00088 * 8.38629 * 4 3 2 7 7 N 1.31408 * 119.99734 * 25.16677 * 6 4 3 8 8 Si 1.86798 * 120.00129 * 205.17209 * 6 4 3 9 9 H 1.48495 * 109.47290 * 84.98546 * 8 6 4 10 10 H 1.48497 * 109.47078 * 204.98707 * 8 6 4 11 11 H 1.48499 * 109.46846 * 324.98340 * 8 6 4 12 12 C 1.34779 * 120.00427 * 83.55276 * 3 2 1 13 13 O 1.21295 * 120.00259 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99702 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.46905 * 179.97438 * 14 12 3 16 16 C 1.53008 * 109.46619 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46795 * 180.02562 * 16 15 14 18 18 C 1.33636 * 122.75238 * 124.73118 * 17 16 15 19 19 S 1.76198 * 107.92312 * 179.97438 * 18 17 16 20 20 C 1.70967 * 90.28401 * 0.27289 * 19 18 17 21 21 C 1.50700 * 124.91602 * 179.84529 * 20 19 18 22 22 N 1.29029 * 110.17106 * 359.83990 * 20 19 18 23 23 H 1.09004 * 109.47073 * 60.00596 * 1 2 3 24 24 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47523 * 300.00294 * 1 2 3 26 26 H 1.08992 * 109.47169 * 239.99829 * 2 1 3 27 27 H 1.09003 * 109.46818 * 119.99889 * 2 1 3 28 28 H 0.97006 * 119.99955 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46888 * 59.99998 * 14 12 3 30 30 H 1.08998 * 109.47115 * 299.99570 * 14 12 3 31 31 H 1.08993 * 109.47177 * 60.00017 * 15 14 12 32 32 H 1.08998 * 109.47007 * 299.99788 * 15 14 12 33 33 H 1.08998 * 109.47051 * 299.99508 * 16 15 14 34 34 H 1.08993 * 109.47538 * 59.99985 * 16 15 14 35 35 H 1.07997 * 126.03606 * 0.03239 * 18 17 16 36 36 H 1.09001 * 109.46923 * 269.99615 * 21 20 19 37 37 H 1.08998 * 109.47330 * 29.99641 * 21 20 19 38 38 H 1.09003 * 109.47241 * 150.00421 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9478 -1.1695 6 6 2.1067 1.3519 -2.3889 7 7 1.1283 0.4788 -2.4731 8 14 3.1404 1.7446 -3.8944 9 1 4.3646 0.9041 -3.8873 10 1 2.3538 1.4631 -5.1220 11 1 3.5246 3.1788 -3.8707 12 6 2.1194 2.0603 1.1598 13 8 2.5241 3.2037 1.1598 14 6 1.7306 1.3986 2.4567 15 6 1.9394 2.3794 3.6123 16 6 1.5453 1.7072 4.9291 17 6 1.7503 2.6735 6.0673 18 6 0.7773 2.9989 6.9236 19 16 1.4391 4.1458 8.0860 20 6 2.9561 4.0800 7.3001 21 6 4.1792 4.8539 7.7197 22 7 2.9022 3.2716 6.2959 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.9430 0.0379 -3.3171 29 1 2.3498 0.5154 2.6139 30 1 0.6819 1.1043 2.4144 31 1 1.3206 3.2628 3.4554 32 1 2.9882 2.6732 3.6544 33 1 0.4966 1.4131 4.8873 34 1 2.1644 0.8240 5.0859 35 1 -0.2354 2.6242 6.9068 36 1 4.1917 5.8176 7.2105 37 1 4.1565 5.0129 8.7977 38 1 5.0741 4.2911 7.4540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267382425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = 4.100498 kcal Electronic energy + Delta-G solvation = -19538.792591 eV Core-core repulsion = 16508.222969 eV Total energy + Delta-G solvation = -3030.569622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97755 -38.53493 -35.23109 -34.29109 -32.13252 -31.57524 -29.36931 -28.72631 -27.40934 -24.80561 -23.06956 -22.15096 -21.35918 -19.74211 -18.56307 -17.54222 -16.75294 -15.92161 -15.42427 -15.20782 -14.80581 -14.46030 -14.10956 -13.76303 -13.60855 -13.13130 -12.92790 -12.66677 -12.45268 -12.31151 -12.13140 -11.93649 -11.50869 -11.29368 -11.07588 -10.95946 -10.78613 -10.65559 -10.35236 -10.23462 -10.02487 -9.74972 -9.63225 -9.46082 -8.83414 -8.70993 -8.24631 -7.68394 -6.29960 -3.70565 0.65593 1.29251 1.65729 2.78238 3.20145 3.29519 3.34668 3.98848 4.00652 4.18591 4.81830 4.90611 5.11633 5.13802 5.16877 5.24072 5.27364 5.50528 5.58851 5.66115 5.72455 5.95998 6.02600 6.04785 6.11905 6.21422 6.39151 6.58819 6.65539 6.74700 6.81021 6.90137 7.31771 7.52521 7.75638 7.78703 8.17708 8.59206 9.26760 9.53800 10.10409 10.71064 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.003216 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.479716 B = 8704.442671 C = 9305.887782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 N -0.446 5.446 4 C -0.306 4.306 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.868 5.868 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.443 3.557 13 O -0.594 6.594 14 C -0.129 4.129 15 C -0.089 4.089 16 C -0.047 4.047 17 C 0.084 3.916 18 C -0.264 4.264 19 S 0.092 5.908 20 C 0.052 3.948 21 C -0.078 4.078 22 N -0.463 5.463 23 H 0.091 0.909 24 H 0.036 0.964 25 H 0.024 0.976 26 H 0.100 0.900 27 H 0.032 0.968 28 H 0.266 0.734 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 0.711 18.827 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.002 4.002 3 N -0.164 5.164 4 C -0.433 4.433 5 H 0.121 0.879 6 C -0.174 4.174 7 N -0.508 5.508 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.231 3.769 13 O -0.480 6.480 14 C -0.170 4.170 15 C -0.127 4.127 16 C -0.087 4.087 17 C -0.047 4.047 18 C -0.402 4.402 19 S 0.346 5.654 20 C -0.227 4.227 21 C -0.138 4.138 22 N -0.178 5.178 23 H 0.109 0.891 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.118 0.882 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.193 0.807 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.598 1.614 19.217 19.294 hybrid contribution 0.035 -0.663 -1.509 1.649 sum -0.563 0.952 17.708 17.742 Atomic orbital electron populations 1.22124 0.96832 0.99699 1.01985 1.21416 0.94398 0.83798 1.00630 1.43847 1.55722 1.11258 1.05609 1.19730 1.35856 1.05437 0.82313 0.87944 1.25157 0.96080 0.97299 0.98819 1.70116 1.25115 1.29055 1.26553 0.86084 0.80017 0.79148 0.80354 1.20446 1.21212 1.19558 1.20000 0.84842 0.86904 0.85131 1.90504 1.51848 1.18598 1.87021 1.21574 1.02129 0.99083 0.94166 1.21160 1.03306 0.97833 0.90434 1.20336 1.02067 0.95501 0.90840 1.20403 0.87211 0.99025 0.98061 1.26791 1.05290 1.06665 1.01462 1.83820 1.07016 1.42345 1.32214 1.27078 0.99905 1.00249 0.95445 1.20449 0.92610 0.99291 1.01438 1.66095 1.26273 1.08847 1.16560 0.89052 0.94468 0.95729 0.88181 0.95016 0.92412 0.90755 0.90402 0.91807 0.90645 0.90349 0.90166 0.80664 0.89477 0.90268 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.64 37.16 0.36 -2.74 16 2 C 0.12 2.73 5.07 -4.04 -0.02 2.71 16 3 N -0.45 -11.59 2.64 -114.81 -0.30 -11.89 16 4 C -0.31 -8.66 9.43 -14.93 -0.14 -8.80 16 5 H 0.10 3.09 7.31 -52.48 -0.38 2.71 16 6 C 0.03 0.76 4.90 -17.47 -0.09 0.67 16 7 N -0.87 -22.46 8.64 55.50 0.48 -21.98 16 8 Si 0.92 20.82 29.62 -169.99 -5.04 15.78 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.44 11.13 7.58 -10.98 -0.08 11.04 16 13 O -0.59 -17.13 15.57 5.54 0.09 -17.04 16 14 C -0.13 -2.44 4.31 -27.88 -0.12 -2.56 16 15 C -0.09 -1.57 4.40 -26.73 -0.12 -1.69 16 16 C -0.05 -0.65 5.71 -27.88 -0.16 -0.81 16 17 C 0.08 1.18 6.08 -84.22 -0.51 0.67 16 18 C -0.26 -3.06 11.07 29.12 0.32 -2.74 16 19 S 0.09 0.94 23.18 -107.50 -2.49 -1.56 16 20 C 0.05 0.62 7.39 -13.46 -0.10 0.52 16 21 C -0.08 -0.64 10.46 36.01 0.38 -0.27 16 22 N -0.46 -6.93 10.34 -8.06 -0.08 -7.01 16 23 H 0.09 2.21 6.38 -51.93 -0.33 1.88 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.47 6.45 -51.93 -0.34 0.14 16 26 H 0.10 2.43 5.83 -51.93 -0.30 2.13 16 27 H 0.03 0.62 6.71 -51.93 -0.35 0.27 16 28 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.07 1.27 7.42 -51.93 -0.39 0.88 16 30 H 0.08 1.35 6.41 -51.93 -0.33 1.02 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 33 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -32.17 325.10 -8.07 -40.24 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.35 Total: 2.54 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.28 Total: -3.99 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.09 Total: -40.88 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.09 Total: -17.04 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.04 Total: 15.78 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.17 -8.07 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267382425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.343 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds