Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46962 * 2 1 4 4 C 1.37101 * 119.99967 * 263.55803 * 3 2 1 5 5 H 1.08005 * 119.99766 * 188.39460 * 4 3 2 6 6 C 1.38948 * 120.00088 * 8.38629 * 4 3 2 7 7 N 1.31408 * 119.99734 * 25.16677 * 6 4 3 8 8 Si 1.86798 * 120.00129 * 205.17209 * 6 4 3 9 9 H 1.48495 * 109.47290 * 84.98546 * 8 6 4 10 10 H 1.48497 * 109.47078 * 204.98707 * 8 6 4 11 11 H 1.48499 * 109.46846 * 324.98340 * 8 6 4 12 12 C 1.34779 * 120.00427 * 83.55276 * 3 2 1 13 13 O 1.21295 * 120.00259 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99702 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.46905 * 179.97438 * 14 12 3 16 16 C 1.53008 * 109.46619 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46795 * 180.02562 * 16 15 14 18 18 C 1.33636 * 122.75238 * 124.73118 * 17 16 15 19 19 S 1.76198 * 107.92312 * 179.97438 * 18 17 16 20 20 C 1.70967 * 90.28401 * 0.27289 * 19 18 17 21 21 C 1.50700 * 124.91602 * 179.84529 * 20 19 18 22 22 N 1.29029 * 110.17106 * 359.83990 * 20 19 18 23 23 H 1.09004 * 109.47073 * 60.00596 * 1 2 3 24 24 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47523 * 300.00294 * 1 2 3 26 26 H 1.08992 * 109.47169 * 239.99829 * 2 1 3 27 27 H 1.09003 * 109.46818 * 119.99889 * 2 1 3 28 28 H 0.97006 * 119.99955 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46888 * 59.99998 * 14 12 3 30 30 H 1.08998 * 109.47115 * 299.99570 * 14 12 3 31 31 H 1.08993 * 109.47177 * 60.00017 * 15 14 12 32 32 H 1.08998 * 109.47007 * 299.99788 * 15 14 12 33 33 H 1.08998 * 109.47051 * 299.99508 * 16 15 14 34 34 H 1.08993 * 109.47538 * 59.99985 * 16 15 14 35 35 H 1.07997 * 126.03606 * 0.03239 * 18 17 16 36 36 H 1.09001 * 109.46923 * 269.99615 * 21 20 19 37 37 H 1.08998 * 109.47330 * 29.99641 * 21 20 19 38 38 H 1.09003 * 109.47241 * 150.00421 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9478 -1.1695 6 6 2.1067 1.3519 -2.3889 7 7 1.1283 0.4788 -2.4731 8 14 3.1404 1.7446 -3.8944 9 1 4.3646 0.9041 -3.8873 10 1 2.3538 1.4631 -5.1220 11 1 3.5246 3.1788 -3.8707 12 6 2.1194 2.0603 1.1598 13 8 2.5241 3.2037 1.1598 14 6 1.7306 1.3986 2.4567 15 6 1.9394 2.3794 3.6123 16 6 1.5453 1.7072 4.9291 17 6 1.7503 2.6735 6.0673 18 6 0.7773 2.9989 6.9236 19 16 1.4391 4.1458 8.0860 20 6 2.9561 4.0800 7.3001 21 6 4.1792 4.8539 7.7197 22 7 2.9022 3.2716 6.2959 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.9430 0.0379 -3.3171 29 1 2.3498 0.5154 2.6139 30 1 0.6819 1.1043 2.4144 31 1 1.3206 3.2628 3.4554 32 1 2.9882 2.6732 3.6544 33 1 0.4966 1.4131 4.8873 34 1 2.1644 0.8240 5.0859 35 1 -0.2354 2.6242 6.9068 36 1 4.1917 5.8176 7.2105 37 1 4.1565 5.0129 8.7977 38 1 5.0741 4.2911 7.4540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267382425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = -15.690663 kcal Electronic energy + Delta-G solvation = -19539.650801 eV Core-core repulsion = 16508.222969 eV Total energy + Delta-G solvation = -3031.427831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94519 -40.40710 -37.11516 -35.64642 -33.83079 -32.91516 -31.17695 -29.75437 -28.62666 -26.63968 -24.31046 -23.75791 -22.68961 -20.66467 -20.36765 -18.78559 -18.50054 -17.74072 -16.65708 -16.52365 -16.19766 -15.90660 -15.84209 -15.06994 -14.78617 -14.50197 -14.30214 -14.07509 -13.75293 -13.62283 -13.44574 -13.01661 -12.96955 -12.87166 -12.79174 -12.53467 -12.35426 -12.17549 -12.09228 -11.85538 -11.73099 -11.46314 -10.80696 -10.54546 -10.33287 -10.26447 -9.68506 -9.57118 -8.32743 -5.82086 -0.20988 0.47609 0.78811 1.36127 1.42011 1.52354 1.82909 2.06861 2.29708 3.06532 3.13886 3.21934 3.93435 3.96802 4.08185 4.21704 4.39482 4.42610 4.49576 4.55972 4.64519 4.67311 4.77866 4.82389 4.85185 4.93160 4.97944 5.05300 5.19201 5.27118 5.30720 5.45013 5.48404 5.52744 5.94586 6.11607 6.57547 6.87824 7.22553 7.55702 8.12822 8.65484 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033586 B = 0.003216 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.479716 B = 8704.442671 C = 9305.887782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.120 3.880 3 N -0.456 5.456 4 C -0.355 4.355 5 H 0.066 0.934 6 C 0.006 3.994 7 N -0.867 5.867 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.271 1.271 11 H -0.282 1.282 12 C 0.423 3.577 13 O -0.647 6.647 14 C -0.114 4.114 15 C -0.076 4.076 16 C -0.037 4.037 17 C 0.052 3.948 18 C -0.265 4.265 19 S 0.147 5.853 20 C 0.032 3.968 21 C -0.079 4.079 22 N -0.509 5.509 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.273 0.727 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.201 0.799 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -0.761 20.142 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.003 4.003 3 N -0.174 5.174 4 C -0.482 4.482 5 H 0.084 0.916 6 C -0.197 4.197 7 N -0.505 5.505 8 Si 0.802 3.198 9 H -0.195 1.195 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.214 3.786 13 O -0.536 6.536 14 C -0.154 4.154 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.079 4.079 18 C -0.403 4.403 19 S 0.401 5.599 20 C -0.246 4.246 21 C -0.139 4.139 22 N -0.225 5.225 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.218 0.782 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.716 0.098 20.537 20.608 hybrid contribution 0.334 -0.169 -1.912 1.948 sum -1.382 -0.071 18.625 18.676 Atomic orbital electron populations 1.21970 0.95467 1.01304 1.00886 1.21537 0.95483 0.81963 1.01320 1.44108 1.55498 1.12514 1.05258 1.19550 1.38686 1.05551 0.84436 0.91599 1.25802 0.96363 0.96926 1.00598 1.70189 1.24416 1.28314 1.27536 0.85199 0.78820 0.78301 0.77467 1.19478 1.19550 1.20751 1.21133 0.83930 0.86649 0.86882 1.90459 1.54032 1.21104 1.88002 1.21530 1.03718 0.99412 0.90714 1.20975 1.00817 0.97118 0.92582 1.20245 1.03773 0.95349 0.88310 1.20503 0.87879 1.00294 0.99226 1.27166 1.05947 1.06181 1.01043 1.83573 1.05043 1.40783 1.30513 1.27645 1.01907 0.99909 0.95130 1.20602 0.91169 0.98871 1.03250 1.66104 1.27585 1.10532 1.18326 0.92602 0.91389 0.94333 0.90215 0.91494 0.91648 0.88257 0.87997 0.94328 0.93898 0.87591 0.89239 0.78179 0.88969 0.87437 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 9.64 71.98 0.69 -4.81 16 2 C 0.12 5.24 5.07 86.38 0.44 5.67 16 3 N -0.46 -24.13 2.64 -635.54 -1.68 -25.81 16 4 C -0.35 -20.83 9.43 84.04 0.79 -20.04 16 5 H 0.07 4.26 7.31 -2.91 -0.02 4.24 16 6 C 0.01 0.33 4.90 84.93 0.42 0.74 16 7 N -0.87 -44.38 8.64 21.66 0.19 -44.19 16 8 Si 0.98 42.95 29.62 68.60 2.03 44.98 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.42 21.86 7.58 87.66 0.66 22.52 16 13 O -0.65 -39.44 15.57 -3.08 -0.05 -39.49 16 14 C -0.11 -4.19 4.31 29.85 0.13 -4.06 16 15 C -0.08 -2.73 4.40 30.60 0.13 -2.59 16 16 C -0.04 -0.96 5.71 29.85 0.17 -0.79 16 17 C 0.05 1.41 6.08 41.52 0.25 1.66 16 18 C -0.26 -5.59 11.07 66.78 0.74 -4.85 16 19 S 0.15 2.66 23.18 -56.49 -1.31 1.35 16 20 C 0.03 0.74 7.39 88.52 0.65 1.39 16 21 C -0.08 -1.24 10.46 71.24 0.75 -0.50 16 22 N -0.51 -15.30 10.34 -179.40 -1.86 -17.15 16 23 H 0.06 2.64 6.38 -2.38 -0.02 2.63 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.04 1.40 6.45 -2.39 -0.02 1.38 16 26 H 0.08 3.81 5.83 -2.39 -0.01 3.79 16 27 H 0.07 2.43 6.71 -2.39 -0.02 2.42 16 28 H 0.27 13.07 8.31 -92.70 -0.77 12.30 16 29 H 0.10 3.17 7.42 -2.39 -0.02 3.15 16 30 H 0.10 3.27 6.41 -2.39 -0.02 3.26 16 31 H 0.04 1.53 8.10 -2.39 -0.02 1.52 16 32 H 0.04 1.78 8.03 -2.39 -0.02 1.77 16 33 H 0.11 2.11 8.03 -2.39 -0.02 2.09 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.96 325.10 4.21 -69.75 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.06 Total: 16.21 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.83 Total: -5.65 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.35 Total: -87.16 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.05 Total: -39.49 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.31 Total: 1.35 kcal Total: -73.96 4.21 -69.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267382425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.057 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds