Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99888 * 2 1 4 4 C 1.46901 * 111.00299 * 123.95747 * 2 1 3 5 5 C 1.50696 * 109.47146 * 66.04415 * 4 2 1 6 6 C 1.37475 * 123.35457 * 260.16867 * 5 4 2 7 7 C 1.33816 * 115.09726 * 180.27234 * 6 5 4 8 8 S 1.70616 * 110.95931 * 359.76688 * 7 6 5 9 9 C 1.36655 * 123.34841 * 79.99905 * 5 4 2 10 10 C 1.46574 * 125.45810 * 0.02562 * 9 5 4 11 11 O 1.21706 * 120.00097 * 352.17874 * 10 9 5 12 12 N 1.34784 * 120.00198 * 171.91170 * 10 9 5 13 13 C 1.46504 * 119.99481 * 354.18666 * 12 10 9 14 14 C 1.46500 * 120.00215 * 174.18626 * 12 10 9 15 15 C 1.50694 * 109.47099 * 89.99655 * 14 12 10 16 16 H 1.08005 * 120.00144 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00201 * 179.97438 * 15 14 12 18 18 N 1.31518 * 119.99845 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47173 * 90.00271 * 19 17 15 21 21 H 1.48492 * 109.47443 * 209.99996 * 19 17 15 22 22 H 1.48498 * 109.47237 * 330.00625 * 19 17 15 23 23 H 1.08995 * 109.46922 * 296.03985 * 1 2 3 24 24 H 1.08995 * 109.47304 * 56.04307 * 1 2 3 25 25 H 1.09004 * 109.47010 * 176.04662 * 1 2 3 26 26 H 1.08996 * 109.47292 * 183.95333 * 3 2 1 27 27 H 1.09005 * 109.47235 * 303.96388 * 3 2 1 28 28 H 1.09003 * 109.47067 * 63.95195 * 3 2 1 29 29 H 1.08994 * 109.46565 * 306.04507 * 4 2 1 30 30 H 1.08996 * 109.46795 * 186.04857 * 4 2 1 31 31 H 1.07995 * 122.44541 * 0.05761 * 6 5 4 32 32 H 1.08008 * 124.51587 * 179.73981 * 7 6 5 33 33 H 1.08992 * 109.47115 * 84.00985 * 13 12 10 34 34 H 1.09001 * 109.46891 * 204.01387 * 13 12 10 35 35 H 1.08999 * 109.46913 * 324.00837 * 13 12 10 36 36 H 1.08996 * 109.46814 * 209.99941 * 14 12 10 37 37 H 1.09000 * 109.46823 * 329.99440 * 14 12 10 38 38 H 0.96997 * 120.00065 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6371 -2.2204 0.9727 6 6 0.5830 -2.8174 1.6227 7 6 0.4177 -4.1190 1.3597 8 16 1.5952 -4.6730 0.2563 9 6 2.3254 -3.0764 0.1597 10 6 3.4898 -2.7218 -0.6569 11 8 3.8315 -1.5580 -0.7567 12 7 4.1854 -3.6853 -1.2930 13 6 3.8576 -5.0953 -1.0678 14 6 5.2691 -3.3224 -2.2096 15 6 6.5661 -3.2410 -1.4467 16 1 6.5817 -3.4401 -0.3853 17 6 7.7331 -2.9135 -2.1039 18 7 7.7142 -2.6716 -3.3965 19 14 9.3409 -2.8132 -1.1584 20 1 10.0029 -4.1426 -1.1650 21 1 10.2316 -1.8137 -1.8008 22 1 9.0667 -2.4039 0.2425 23 1 -0.3633 0.4511 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0828 1.3433 -0.0708 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8723 0.9233 29 1 1.5612 -0.3873 2.0627 30 1 3.0798 -0.6611 1.1755 31 1 -0.0622 -2.2763 2.2989 32 1 -0.3575 -4.7366 1.7891 33 1 3.0329 -5.3850 -1.7188 34 1 4.7293 -5.7108 -1.2897 35 1 3.5668 -5.2389 -0.0272 36 1 5.3534 -4.0787 -2.9900 37 1 5.0529 -2.3551 -2.6630 38 1 8.5352 -2.4415 -3.8589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268056173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = 16.676862 kcal Electronic energy + Delta-G solvation = -20459.107225 eV Core-core repulsion = 17429.082955 eV Total energy + Delta-G solvation = -3030.024270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35564 -37.92689 -36.05941 -34.70919 -32.61463 -30.19960 -28.35254 -27.36715 -27.10177 -25.74232 -23.95137 -22.78523 -21.40251 -19.99410 -18.04804 -17.32304 -16.48781 -15.60389 -15.36500 -15.30015 -14.77914 -14.74320 -14.42919 -14.07628 -13.94937 -12.87406 -12.66808 -12.63892 -12.46503 -12.21910 -12.18223 -12.02910 -11.74486 -11.43130 -11.37237 -11.23343 -11.14761 -10.88569 -10.60632 -10.32811 -10.08809 -9.60691 -8.89305 -8.51922 -8.40748 -8.30234 -7.99223 -7.56721 -6.01047 -4.05423 0.84376 1.75733 2.17563 2.60324 3.32261 3.38982 3.43691 3.89626 4.03163 4.36937 4.48078 5.00326 5.12152 5.26314 5.32467 5.36195 5.44454 5.46903 5.52543 5.61581 5.73909 5.76370 5.81645 5.98581 6.01723 6.13158 6.15533 6.22694 6.50337 6.53463 7.10226 7.28128 7.33572 7.47185 7.56413 7.95435 8.26369 8.42057 8.94072 9.13699 9.59416 11.06924 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.005707 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.654518 B = 4904.684980 C = 5917.048599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.523 5.523 3 C 0.032 3.968 4 C 0.120 3.880 5 C -0.044 4.044 6 C -0.140 4.140 7 C -0.275 4.275 8 S 0.213 5.787 9 C -0.221 4.221 10 C 0.572 3.428 11 O -0.502 6.502 12 N -0.600 5.600 13 C 0.069 3.931 14 C 0.250 3.750 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.016 0.984 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.158 0.842 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 -2.089 8.657 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.247 5.247 3 C -0.116 4.116 4 C -0.009 4.009 5 C -0.059 4.059 6 C -0.172 4.172 7 C -0.412 4.412 8 S 0.482 5.518 9 C -0.343 4.343 10 C 0.357 3.643 11 O -0.379 6.379 12 N -0.333 5.333 13 C -0.077 4.077 14 C 0.131 3.869 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.176 0.824 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.861 -3.061 7.337 16.853 hybrid contribution 0.084 1.602 2.016 2.576 sum -14.777 -1.459 9.353 17.549 Atomic orbital electron populations 1.22421 0.88371 1.01987 0.99634 1.61768 1.06578 1.13542 1.42781 1.22319 1.01851 0.88070 0.99341 1.20694 1.01922 0.87818 0.90476 1.19197 0.94483 0.96325 0.95853 1.19773 0.99512 0.94363 1.03507 1.25611 1.07031 1.00372 1.08154 1.83582 1.19033 1.09472 1.39745 1.24932 1.04537 0.97055 1.07738 1.16869 0.81403 0.85991 0.80017 1.90809 1.67933 1.18014 1.61100 1.48035 1.35375 1.04449 1.45435 1.21786 1.01444 0.84505 0.99929 1.19301 0.82774 0.97300 0.87507 1.21431 0.92180 1.47340 0.95284 0.92452 1.24923 0.99108 0.95137 0.94905 1.69933 1.28047 1.47414 1.08055 0.86509 0.83164 0.77718 0.80104 1.20687 1.21120 1.19921 0.96393 0.91812 0.91547 0.90519 0.91720 0.96538 0.94931 0.88288 0.85127 0.82446 0.93062 0.89108 0.91954 0.94890 0.93664 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.33 60.07 0.56 0.87 16 2 N -0.52 -8.35 4.66 -252.73 -1.18 -9.53 16 3 C 0.03 0.46 9.57 60.06 0.57 1.03 16 4 C 0.12 1.91 4.32 -4.98 -0.02 1.89 16 5 C -0.04 -0.69 4.54 -105.47 -0.48 -1.17 16 6 C -0.14 -1.79 9.16 -41.41 -0.38 -2.17 16 7 C -0.28 -3.21 10.92 29.18 0.32 -2.89 16 8 S 0.21 2.77 17.91 -107.50 -1.93 0.85 16 9 C -0.22 -3.88 6.19 -36.79 -0.23 -4.11 16 10 C 0.57 12.58 7.60 -12.90 -0.10 12.48 16 11 O -0.50 -12.67 13.97 5.18 0.07 -12.60 16 12 N -0.60 -13.17 2.86 -184.55 -0.53 -13.70 16 13 C 0.07 1.15 8.83 59.85 0.53 1.68 16 14 C 0.25 6.58 5.09 -5.20 -0.03 6.56 16 15 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 25 H 0.07 0.87 6.71 -51.93 -0.35 0.53 16 26 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 27 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.10 1.83 6.78 -51.93 -0.35 1.48 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.05 0.73 7.48 -51.93 -0.39 0.34 16 34 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 35 H 0.06 0.93 5.15 -27.95 -0.14 0.78 16 36 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -32.58 324.63 -8.00 -40.58 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.38 Total: -2.14 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 0.33 Total: 0.60 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.97 Total: -49.13 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.93 Total: 0.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.58 -8.00 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268056173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.258 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds