Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99888 * 2 1 4 4 C 1.46901 * 111.00299 * 123.95747 * 2 1 3 5 5 C 1.50696 * 109.47146 * 66.04415 * 4 2 1 6 6 C 1.37475 * 123.35457 * 260.16867 * 5 4 2 7 7 C 1.33816 * 115.09726 * 180.27234 * 6 5 4 8 8 S 1.70616 * 110.95931 * 359.76688 * 7 6 5 9 9 C 1.36655 * 123.34841 * 79.99905 * 5 4 2 10 10 C 1.46574 * 125.45810 * 0.02562 * 9 5 4 11 11 O 1.21706 * 120.00097 * 352.17874 * 10 9 5 12 12 N 1.34784 * 120.00198 * 171.91170 * 10 9 5 13 13 C 1.46504 * 119.99481 * 354.18666 * 12 10 9 14 14 C 1.46500 * 120.00215 * 174.18626 * 12 10 9 15 15 C 1.50694 * 109.47099 * 89.99655 * 14 12 10 16 16 H 1.08005 * 120.00144 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00201 * 179.97438 * 15 14 12 18 18 N 1.31518 * 119.99845 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47173 * 90.00271 * 19 17 15 21 21 H 1.48492 * 109.47443 * 209.99996 * 19 17 15 22 22 H 1.48498 * 109.47237 * 330.00625 * 19 17 15 23 23 H 1.08995 * 109.46922 * 296.03985 * 1 2 3 24 24 H 1.08995 * 109.47304 * 56.04307 * 1 2 3 25 25 H 1.09004 * 109.47010 * 176.04662 * 1 2 3 26 26 H 1.08996 * 109.47292 * 183.95333 * 3 2 1 27 27 H 1.09005 * 109.47235 * 303.96388 * 3 2 1 28 28 H 1.09003 * 109.47067 * 63.95195 * 3 2 1 29 29 H 1.08994 * 109.46565 * 306.04507 * 4 2 1 30 30 H 1.08996 * 109.46795 * 186.04857 * 4 2 1 31 31 H 1.07995 * 122.44541 * 0.05761 * 6 5 4 32 32 H 1.08008 * 124.51587 * 179.73981 * 7 6 5 33 33 H 1.08992 * 109.47115 * 84.00985 * 13 12 10 34 34 H 1.09001 * 109.46891 * 204.01387 * 13 12 10 35 35 H 1.08999 * 109.46913 * 324.00837 * 13 12 10 36 36 H 1.08996 * 109.46814 * 209.99941 * 14 12 10 37 37 H 1.09000 * 109.46823 * 329.99440 * 14 12 10 38 38 H 0.96997 * 120.00065 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6371 -2.2204 0.9727 6 6 0.5830 -2.8174 1.6227 7 6 0.4177 -4.1190 1.3597 8 16 1.5952 -4.6730 0.2563 9 6 2.3254 -3.0764 0.1597 10 6 3.4898 -2.7218 -0.6569 11 8 3.8315 -1.5580 -0.7567 12 7 4.1854 -3.6853 -1.2930 13 6 3.8576 -5.0953 -1.0678 14 6 5.2691 -3.3224 -2.2096 15 6 6.5661 -3.2410 -1.4467 16 1 6.5817 -3.4401 -0.3853 17 6 7.7331 -2.9135 -2.1039 18 7 7.7142 -2.6716 -3.3965 19 14 9.3409 -2.8132 -1.1584 20 1 10.0029 -4.1426 -1.1650 21 1 10.2316 -1.8137 -1.8008 22 1 9.0667 -2.4039 0.2425 23 1 -0.3633 0.4511 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0828 1.3433 -0.0708 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8723 0.9233 29 1 1.5612 -0.3873 2.0627 30 1 3.0798 -0.6611 1.1755 31 1 -0.0622 -2.2763 2.2989 32 1 -0.3575 -4.7366 1.7891 33 1 3.0329 -5.3850 -1.7188 34 1 4.7293 -5.7108 -1.2897 35 1 3.5668 -5.2389 -0.0272 36 1 5.3534 -4.0787 -2.9900 37 1 5.0529 -2.3551 -2.6630 38 1 8.5352 -2.4415 -3.8589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268056173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = -5.967320 kcal Electronic energy + Delta-G solvation = -20460.089150 eV Core-core repulsion = 17429.082955 eV Total energy + Delta-G solvation = -3031.006196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80619 -39.29542 -37.18026 -36.48414 -34.74279 -31.48436 -30.04059 -28.58676 -28.38332 -27.37453 -25.39788 -24.41817 -22.51965 -21.51401 -19.22244 -18.83581 -18.64185 -17.07759 -16.77204 -16.57723 -16.46498 -15.96614 -15.85585 -15.58559 -15.09444 -14.37651 -14.25301 -13.92408 -13.87727 -13.66939 -13.52466 -13.35296 -13.24059 -12.86435 -12.82568 -12.59330 -12.57092 -12.41470 -12.36847 -12.21116 -11.71745 -11.41389 -10.62676 -10.58541 -9.74964 -9.47272 -9.22152 -9.07368 -8.20615 -6.35214 -0.32398 0.62328 1.13559 1.36408 1.39596 1.49533 1.51417 2.26080 2.43786 2.45929 3.08457 3.25257 3.78061 3.98697 4.09181 4.21646 4.31123 4.38606 4.48263 4.52575 4.56178 4.63801 4.73322 4.81262 4.82210 4.99046 5.01077 5.03248 5.10385 5.22449 5.43308 5.46415 5.56672 5.84447 6.07587 6.13813 6.26121 6.70619 6.76551 7.29871 7.50128 8.86215 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.005707 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.654518 B = 4904.684980 C = 5917.048599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.555 5.555 3 C 0.037 3.963 4 C 0.122 3.878 5 C -0.035 4.035 6 C -0.151 4.151 7 C -0.245 4.245 8 S 0.259 5.741 9 C -0.280 4.280 10 C 0.564 3.436 11 O -0.554 6.554 12 N -0.612 5.612 13 C 0.066 3.934 14 C 0.267 3.733 15 C -0.539 4.539 16 H 0.049 0.951 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.276 1.276 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.159 0.841 32 H 0.199 0.801 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.027 0.973 37 H -0.001 1.001 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.706 -3.703 10.803 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.279 5.279 3 C -0.111 4.111 4 C -0.008 4.008 5 C -0.051 4.051 6 C -0.182 4.182 7 C -0.382 4.382 8 S 0.529 5.471 9 C -0.401 4.401 10 C 0.352 3.648 11 O -0.434 6.434 12 N -0.344 5.344 13 C -0.078 4.078 14 C 0.146 3.854 15 C -0.578 4.578 16 H 0.068 0.932 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.201 1.201 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.216 0.784 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.017 0.983 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.982 -4.726 9.490 20.019 hybrid contribution 0.605 2.083 1.371 2.566 sum -16.376 -2.643 10.861 19.827 Atomic orbital electron populations 1.22410 0.86272 1.02222 1.00978 1.61698 1.08625 1.14169 1.43392 1.22237 0.99926 0.88046 1.00899 1.20589 0.99770 0.88749 0.91653 1.19469 0.94682 0.95958 0.94997 1.19905 0.99111 0.95014 1.04130 1.26095 1.06243 1.00176 1.05707 1.83212 1.18531 1.05897 1.39474 1.24528 1.04866 1.00866 1.09798 1.17526 0.82279 0.85253 0.79733 1.90763 1.69693 1.20010 1.62982 1.48010 1.34509 1.06915 1.44947 1.22039 1.02461 0.81353 1.01981 1.18743 0.83834 0.94748 0.88085 1.21656 0.93440 1.47702 0.95005 0.93236 1.25823 1.02821 0.94454 0.95856 1.70049 1.29225 1.47913 1.09577 0.85430 0.78610 0.78576 0.78268 1.18646 1.20539 1.20095 0.94284 0.91205 0.91717 0.93677 0.90768 0.94265 0.92456 0.92282 0.82301 0.78353 0.90398 0.89195 0.89851 0.95468 0.98318 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.33 127.69 1.19 1.89 16 2 N -0.55 -17.88 4.66 -953.49 -4.44 -22.32 16 3 C 0.04 1.08 9.57 127.69 1.22 2.31 16 4 C 0.12 3.91 4.32 85.56 0.37 4.28 16 5 C -0.03 -1.06 4.54 -20.42 -0.09 -1.15 16 6 C -0.15 -3.29 9.16 21.08 0.19 -3.10 16 7 C -0.25 -4.49 10.92 66.81 0.73 -3.76 16 8 S 0.26 5.97 17.91 -56.49 -1.01 4.95 16 9 C -0.28 -9.75 6.19 24.08 0.15 -9.60 16 10 C 0.56 26.02 7.60 86.42 0.66 26.68 16 11 O -0.55 -30.23 13.97 -4.37 -0.06 -30.29 16 12 N -0.61 -27.95 2.86 -856.01 -2.45 -30.40 16 13 C 0.07 2.15 8.83 127.77 1.13 3.28 16 14 C 0.27 14.91 5.09 85.63 0.44 15.35 16 15 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.55 5.46 84.65 0.46 1.01 16 18 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 19 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 25 H 0.06 1.56 6.71 -2.39 -0.02 1.54 16 26 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 27 H 0.07 1.96 8.12 -2.38 -0.02 1.95 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.06 2.35 6.78 -2.39 -0.02 2.34 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.08 2.11 7.48 -2.39 -0.02 2.09 16 34 H 0.09 2.93 8.03 -2.39 -0.02 2.91 16 35 H 0.08 2.35 5.15 -17.64 -0.09 2.26 16 36 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 37 H 0.00 -0.08 7.51 -2.39 -0.02 -0.10 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.01 324.63 2.00 -74.01 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.97 Total: 7.40 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.68 Total: 5.44 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -6.60 Total: -109.38 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.01 Total: 4.95 kcal Total: -76.01 2.00 -74.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268056173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.043 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds