Wall clock time and date at job start Tue Mar 31 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46499 * 109.47133 * 2 1 4 4 C 1.36936 * 119.99942 * 275.51626 * 3 2 1 5 5 H 1.07996 * 120.00532 * 33.63818 * 4 3 2 6 6 C 1.38823 * 120.00270 * 213.64026 * 4 3 2 7 7 N 1.31622 * 119.99481 * 23.35896 * 6 4 3 8 8 Si 1.86799 * 120.00192 * 203.35953 * 6 4 3 9 9 H 1.48498 * 109.46966 * 60.00255 * 8 6 4 10 10 H 1.48502 * 109.46597 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47023 * 300.00028 * 8 6 4 12 12 C 1.46493 * 120.00263 * 95.51355 * 3 2 1 13 13 C 1.50701 * 109.47268 * 270.00234 * 12 3 2 14 14 C 1.33648 * 126.03626 * 90.02338 * 13 12 3 15 15 N 1.31780 * 114.49677 * 179.97438 * 14 13 12 16 16 C 1.29025 * 117.12490 * 0.02562 * 15 14 13 17 17 C 1.50708 * 124.91103 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.27314 * 164.32519 * 17 16 15 19 19 C 1.54943 * 110.30956 * 286.41454 * 17 16 15 20 20 C 1.55416 * 100.89212 * 155.29103 * 19 17 16 21 21 C 1.54381 * 102.31008 * 325.98896 * 20 19 17 22 22 O 1.43249 * 107.58715 * 21.28737 * 21 20 19 23 23 S 1.70972 * 110.17152 * 359.72442 * 16 15 14 24 24 H 1.08995 * 109.47848 * 60.00250 * 1 2 3 25 25 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47492 * 299.99716 * 1 2 3 27 27 H 1.09002 * 109.47492 * 240.00284 * 2 1 3 28 28 H 1.08995 * 109.47848 * 119.99750 * 2 1 3 29 29 H 0.96997 * 119.99661 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47219 * 30.00303 * 12 3 2 31 31 H 1.09004 * 109.47978 * 150.00176 * 12 3 2 32 32 H 1.07995 * 122.74914 * 0.02562 * 14 13 12 33 33 H 1.09000 * 111.12689 * 273.28101 * 19 17 16 34 34 H 1.09000 * 111.12779 * 37.44233 * 19 17 16 35 35 H 1.08997 * 110.88244 * 207.75361 * 20 19 17 36 36 H 1.09003 * 110.75856 * 84.16816 * 20 19 17 37 37 H 1.08998 * 109.83570 * 261.77370 * 21 20 19 38 38 H 1.08998 * 109.90608 * 140.84006 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1390 2.0647 -1.1804 5 1 1.4404 1.8829 -1.9837 6 6 3.1595 2.9914 -1.3447 7 7 4.2503 2.9056 -0.6132 8 14 2.9845 4.3601 -2.6039 9 1 1.7975 5.1886 -2.2726 10 1 4.2021 5.2100 -2.5834 11 1 2.8146 3.7700 -3.9560 12 6 2.3773 2.0312 1.2628 13 6 1.1671 2.7255 1.8323 14 6 0.2730 2.1881 2.6678 15 7 -0.6995 3.0025 3.0249 16 6 -0.6758 4.1967 2.5369 17 6 -1.6967 5.2670 2.8260 18 1 -1.3147 6.2435 2.5282 19 6 -3.0226 4.9596 2.0858 20 6 -4.0411 5.7212 2.9791 21 6 -3.4280 5.5615 4.3869 22 8 -2.0355 5.2688 4.2219 23 16 0.6850 4.3913 1.5203 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8899 29 1 4.9632 3.5533 -0.7277 30 1 2.7321 1.2810 1.9696 31 1 3.1652 2.7629 1.0838 32 1 0.3423 1.1702 3.0218 33 1 -3.0092 5.3613 1.0725 34 1 -3.2301 3.8895 2.0794 35 1 -5.0255 5.2558 2.9296 36 1 -4.0931 6.7725 2.6956 37 1 -3.9182 4.7423 4.9130 38 1 -3.5471 6.4867 4.9507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271115021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:00 Heat of formation + Delta-G solvation = 16.028392 kcal Electronic energy + Delta-G solvation = -20291.097622 eV Core-core repulsion = 17261.045232 eV Total energy + Delta-G solvation = -3030.052390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68719 -38.49056 -36.08061 -32.21221 -32.01326 -31.47155 -29.75030 -28.20338 -25.64732 -24.35416 -23.12480 -21.97300 -21.66351 -20.48144 -18.72510 -17.75338 -16.78981 -16.26459 -15.79804 -14.99882 -14.88565 -14.23949 -14.10715 -13.79488 -13.56829 -13.40922 -13.04696 -12.76775 -12.45009 -11.93623 -11.81142 -11.60006 -11.43347 -11.35958 -11.13527 -10.97832 -10.89688 -10.77497 -10.55558 -10.18374 -9.97632 -9.96828 -9.60300 -8.92297 -8.64958 -8.45016 -8.04205 -6.80881 -5.96195 -3.46510 1.40393 2.02447 2.57577 3.29362 3.36319 3.39295 3.43846 4.02250 4.31753 4.38061 4.66183 4.78460 4.96286 5.09890 5.16303 5.19600 5.45954 5.55563 5.63579 5.72728 5.79651 5.84748 5.98656 6.03849 6.09298 6.18567 6.32183 6.38439 6.57994 6.65052 6.83213 6.86924 7.00588 7.10805 7.42215 7.68926 8.32635 8.42676 9.00358 9.63968 10.19567 11.04286 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.005643 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.164216 B = 4960.938600 C = 5587.027510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 N -0.570 5.570 4 C -0.254 4.254 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.881 5.881 8 Si 0.890 3.110 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.279 1.279 12 C 0.197 3.803 13 C -0.164 4.164 14 C -0.010 4.010 15 N -0.447 5.447 16 C -0.017 4.017 17 C 0.171 3.829 18 H 0.085 0.915 19 C -0.143 4.143 20 C -0.154 4.154 21 C 0.052 3.948 22 O -0.363 6.363 23 S 0.132 5.868 24 H 0.047 0.953 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.259 0.741 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 4.198 5.864 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 N -0.289 5.289 4 C -0.384 4.384 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.522 5.522 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.205 1.205 12 C 0.068 3.932 13 C -0.289 4.289 14 C -0.161 4.161 15 N -0.161 5.161 16 C -0.294 4.294 17 C 0.110 3.890 18 H 0.103 0.897 19 C -0.182 4.182 20 C -0.192 4.192 21 C -0.025 4.025 22 O -0.282 6.282 23 S 0.385 5.615 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.180 0.820 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.160 4.904 5.779 13.491 hybrid contribution -0.360 -0.143 -0.512 0.642 sum -11.520 4.761 5.267 13.532 Atomic orbital electron populations 1.22357 0.99797 0.99154 1.01629 1.20889 0.91859 0.86501 0.99141 1.43842 1.75030 1.08182 1.01839 1.19030 1.07992 1.18785 0.92632 0.91885 1.25071 0.94030 1.01247 0.98447 1.69949 1.04594 1.35572 1.42125 0.86550 0.77562 0.82545 0.81536 1.20294 1.21279 1.20484 1.19748 0.90793 0.96654 0.85981 1.27820 1.06018 0.95046 1.00050 1.21452 0.92256 1.00611 1.01802 1.66016 1.25081 1.02006 1.23028 1.26432 1.02530 0.96772 1.03653 1.21155 0.91957 0.93645 0.82270 0.89734 1.23317 0.92929 1.02392 0.99533 1.23141 0.99805 1.01280 0.94987 1.23103 0.82245 1.00435 0.96756 1.88520 1.24334 1.92253 1.23044 1.84064 1.19385 1.13278 1.44729 0.93380 0.94434 0.93236 0.93354 0.94398 0.93092 0.92961 0.86894 0.82028 0.89537 0.89567 0.89912 0.90467 0.91369 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.15 0.38 -2.76 16 2 C 0.14 2.90 6.44 -4.05 -0.03 2.87 16 3 N -0.57 -13.49 2.45 -174.62 -0.43 -13.92 16 4 C -0.25 -6.59 9.48 -15.06 -0.14 -6.74 16 5 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 6 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 7 N -0.88 -23.90 11.32 55.49 0.63 -23.27 16 8 Si 0.89 20.67 29.61 -169.99 -5.03 15.64 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.20 4.46 5.86 -5.20 -0.03 4.42 16 13 C -0.16 -3.42 6.14 -35.92 -0.22 -3.64 16 14 C -0.01 -0.20 9.66 -19.18 -0.19 -0.39 16 15 N -0.45 -8.86 10.52 -11.86 -0.12 -8.98 16 16 C -0.02 -0.30 6.34 -13.45 -0.09 -0.39 16 17 C 0.17 2.58 3.95 -26.85 -0.11 2.47 16 18 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.14 -1.78 6.57 -24.42 -0.16 -1.94 16 20 C -0.15 -1.48 7.02 -24.72 -0.17 -1.65 16 21 C 0.05 0.58 7.80 37.88 0.30 0.88 16 22 O -0.36 -5.72 11.01 -35.23 -0.39 -6.11 16 23 S 0.13 2.59 23.18 -107.50 -2.49 0.10 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 27 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.05 1.11 7.86 -51.93 -0.41 0.70 16 31 H 0.11 2.87 5.31 -51.93 -0.28 2.59 16 32 H 0.16 2.90 8.04 -52.49 -0.42 2.48 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -28.77 326.75 -9.07 -37.84 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.62 Total: 0.39 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.54 Total: -6.61 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.08 Total: -46.18 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.39 Total: -6.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.49 Total: 0.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.77 -9.07 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271115021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.871 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds