Wall clock time and date at job start Tue Mar 31 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46499 * 109.47133 * 2 1 4 4 C 1.36936 * 119.99942 * 275.51626 * 3 2 1 5 5 H 1.07996 * 120.00532 * 33.63818 * 4 3 2 6 6 C 1.38823 * 120.00270 * 213.64026 * 4 3 2 7 7 N 1.31622 * 119.99481 * 23.35896 * 6 4 3 8 8 Si 1.86799 * 120.00192 * 203.35953 * 6 4 3 9 9 H 1.48498 * 109.46966 * 60.00255 * 8 6 4 10 10 H 1.48502 * 109.46597 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47023 * 300.00028 * 8 6 4 12 12 C 1.46493 * 120.00263 * 95.51355 * 3 2 1 13 13 C 1.50701 * 109.47268 * 270.00234 * 12 3 2 14 14 C 1.33648 * 126.03626 * 90.02338 * 13 12 3 15 15 N 1.31780 * 114.49677 * 179.97438 * 14 13 12 16 16 C 1.29025 * 117.12490 * 0.02562 * 15 14 13 17 17 C 1.50708 * 124.91103 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.27314 * 164.32519 * 17 16 15 19 19 C 1.54943 * 110.30956 * 286.41454 * 17 16 15 20 20 C 1.55416 * 100.89212 * 155.29103 * 19 17 16 21 21 C 1.54381 * 102.31008 * 325.98896 * 20 19 17 22 22 O 1.43249 * 107.58715 * 21.28737 * 21 20 19 23 23 S 1.70972 * 110.17152 * 359.72442 * 16 15 14 24 24 H 1.08995 * 109.47848 * 60.00250 * 1 2 3 25 25 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47492 * 299.99716 * 1 2 3 27 27 H 1.09002 * 109.47492 * 240.00284 * 2 1 3 28 28 H 1.08995 * 109.47848 * 119.99750 * 2 1 3 29 29 H 0.96997 * 119.99661 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47219 * 30.00303 * 12 3 2 31 31 H 1.09004 * 109.47978 * 150.00176 * 12 3 2 32 32 H 1.07995 * 122.74914 * 0.02562 * 14 13 12 33 33 H 1.09000 * 111.12689 * 273.28101 * 19 17 16 34 34 H 1.09000 * 111.12779 * 37.44233 * 19 17 16 35 35 H 1.08997 * 110.88244 * 207.75361 * 20 19 17 36 36 H 1.09003 * 110.75856 * 84.16816 * 20 19 17 37 37 H 1.08998 * 109.83570 * 261.77370 * 21 20 19 38 38 H 1.08998 * 109.90608 * 140.84006 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1390 2.0647 -1.1804 5 1 1.4404 1.8829 -1.9837 6 6 3.1595 2.9914 -1.3447 7 7 4.2503 2.9056 -0.6132 8 14 2.9845 4.3601 -2.6039 9 1 1.7975 5.1886 -2.2726 10 1 4.2021 5.2100 -2.5834 11 1 2.8146 3.7700 -3.9560 12 6 2.3773 2.0312 1.2628 13 6 1.1671 2.7255 1.8323 14 6 0.2730 2.1881 2.6678 15 7 -0.6995 3.0025 3.0249 16 6 -0.6758 4.1967 2.5369 17 6 -1.6967 5.2670 2.8260 18 1 -1.3147 6.2435 2.5282 19 6 -3.0226 4.9596 2.0858 20 6 -4.0411 5.7212 2.9791 21 6 -3.4280 5.5615 4.3869 22 8 -2.0355 5.2688 4.2219 23 16 0.6850 4.3913 1.5203 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8899 29 1 4.9632 3.5533 -0.7277 30 1 2.7321 1.2810 1.9696 31 1 3.1652 2.7629 1.0838 32 1 0.3423 1.1702 3.0218 33 1 -3.0092 5.3613 1.0725 34 1 -3.2301 3.8895 2.0794 35 1 -5.0255 5.2558 2.9296 36 1 -4.0931 6.7725 2.6956 37 1 -3.9182 4.7423 4.9130 38 1 -3.5471 6.4867 4.9507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271115021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:00 Heat of formation + Delta-G solvation = -0.506124 kcal Electronic energy + Delta-G solvation = -20291.814613 eV Core-core repulsion = 17261.045232 eV Total energy + Delta-G solvation = -3030.769380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95594 -39.82281 -37.82853 -33.89555 -33.29824 -32.80055 -31.17035 -29.78267 -27.22142 -25.95687 -24.69153 -23.24955 -22.56776 -22.21196 -20.20228 -19.17981 -18.59722 -17.42276 -16.93669 -16.83242 -16.17347 -15.81921 -15.59101 -15.48457 -15.01654 -14.63443 -14.29937 -14.15545 -14.08828 -13.53016 -13.21624 -12.98389 -12.73604 -12.71116 -12.53676 -12.46477 -12.39484 -12.26192 -12.01989 -11.81864 -11.70818 -11.60100 -10.67542 -10.57166 -10.44275 -10.05552 -9.58255 -8.69771 -7.90232 -5.45156 -0.12592 0.49156 1.01389 1.43896 1.48237 1.53428 1.93299 2.48747 2.91630 3.17781 3.20763 3.60950 3.73422 3.86513 3.93136 4.13715 4.32811 4.38899 4.40007 4.44116 4.52838 4.77178 4.78471 4.80621 4.83189 4.89149 4.96712 4.99279 5.05337 5.20656 5.24809 5.33728 5.54270 5.57951 5.67862 5.98903 6.39421 6.88671 7.08863 7.77668 8.29398 9.07240 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.005643 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.164216 B = 4960.938600 C = 5587.027510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.586 5.586 4 C -0.261 4.261 5 H 0.053 0.947 6 C -0.024 4.024 7 N -0.909 5.909 8 Si 0.935 3.065 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.206 3.794 13 C -0.188 4.188 14 C 0.003 3.997 15 N -0.467 5.467 16 C 0.005 3.995 17 C 0.161 3.839 18 H 0.103 0.897 19 C -0.142 4.142 20 C -0.140 4.140 21 C 0.042 3.958 22 O -0.392 6.392 23 S 0.117 5.883 24 H 0.030 0.970 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.255 0.745 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 4.936 6.341 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.071 0.929 6 C -0.222 4.222 7 N -0.552 5.552 8 Si 0.762 3.238 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.201 1.201 12 C 0.077 3.923 13 C -0.312 4.312 14 C -0.148 4.148 15 N -0.182 5.182 16 C -0.273 4.273 17 C 0.100 3.900 18 H 0.120 0.880 19 C -0.181 4.181 20 C -0.178 4.178 21 C -0.034 4.034 22 O -0.311 6.311 23 S 0.371 5.629 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.195 0.805 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.430 5.627 6.259 15.849 hybrid contribution 0.238 -0.374 -0.528 0.689 sum -13.192 5.254 5.731 15.312 Atomic orbital electron populations 1.22175 0.98099 1.00706 1.00397 1.21008 0.93078 0.85137 0.99498 1.43999 1.75538 1.09441 1.01570 1.19097 1.07487 1.19141 0.93370 0.92891 1.25569 0.93843 1.02778 1.00038 1.70049 1.05175 1.36203 1.43778 0.85833 0.77336 0.80570 0.80043 1.19901 1.21464 1.20105 1.19458 0.90733 0.96242 0.85890 1.27465 1.06030 0.95880 1.01832 1.21679 0.91444 1.01142 1.00514 1.66116 1.25432 1.02647 1.23983 1.27161 1.01656 0.97005 1.01449 1.21457 0.92403 0.93127 0.82965 0.87991 1.23313 0.92272 1.01821 1.00675 1.23140 0.99561 1.02365 0.92717 1.23381 0.80258 1.01560 0.98246 1.88480 1.27008 1.92563 1.23090 1.84046 1.20378 1.13006 1.45440 0.95081 0.91430 0.93833 0.94192 0.92788 0.93540 0.92202 0.89698 0.80520 0.88099 0.91470 0.87974 0.88233 0.91270 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 10.21 71.98 0.73 -4.78 16 2 C 0.14 5.55 6.44 86.38 0.56 6.10 16 3 N -0.59 -27.90 2.45 -706.37 -1.73 -29.63 16 4 C -0.26 -13.68 9.48 84.04 0.80 -12.88 16 5 H 0.05 2.83 7.93 -2.91 -0.02 2.81 16 6 C -0.02 -1.28 4.94 84.86 0.42 -0.86 16 7 N -0.91 -50.40 11.32 21.66 0.25 -50.15 16 8 Si 0.93 42.70 29.61 68.60 2.03 44.73 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.21 9.39 5.86 85.63 0.50 9.90 16 13 C -0.19 -7.80 6.14 24.64 0.15 -7.65 16 14 C 0.00 0.11 9.66 83.66 0.81 0.92 16 15 N -0.47 -18.01 10.52 -191.44 -2.01 -20.02 16 16 C 0.01 0.19 6.34 88.52 0.56 0.76 16 17 C 0.16 4.55 3.95 30.52 0.12 4.67 16 18 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 19 C -0.14 -3.17 6.57 32.09 0.21 -2.96 16 20 C -0.14 -2.16 7.02 31.89 0.22 -1.94 16 21 C 0.04 0.82 7.80 72.45 0.56 1.38 16 22 O -0.39 -11.58 11.01 -148.98 -1.64 -13.22 16 23 S 0.12 4.57 23.18 -56.49 -1.31 3.26 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.59 6.39 -2.39 -0.02 1.57 16 27 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 28 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 29 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.06 2.55 7.86 -2.38 -0.02 2.53 16 31 H 0.09 4.43 5.31 -2.38 -0.01 4.42 16 32 H 0.18 6.11 8.04 -2.91 -0.02 6.08 16 33 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.76 8.05 -2.39 -0.02 1.75 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -61.92 326.75 2.28 -59.64 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.04 Total: 12.72 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.65 Total: -7.33 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -3.50 Total: -99.81 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.64 Total: -13.22 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.31 Total: 3.26 kcal Total: -61.92 2.28 -59.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271115021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.134 kcal (2) G-P(sol) polarization free energy of solvation -61.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds