Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36019 * 116.99884 * 2 1 4 4 C 1.38521 * 120.06046 * 359.71904 * 3 2 1 5 5 C 1.38253 * 120.03794 * 180.25098 * 4 3 2 6 6 C 1.38468 * 120.15594 * 0.05280 * 5 4 3 7 7 F 1.35093 * 119.94788 * 179.97438 * 6 5 4 8 8 C 1.38387 * 120.10803 * 359.95073 * 6 5 4 9 9 C 1.38711 * 119.96109 * 0.02562 * 8 6 5 10 10 N 1.40167 * 120.07585 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99517 * 24.77668 * 10 9 8 12 12 O 1.21590 * 120.00534 * 5.63655 * 11 10 9 13 13 N 1.34783 * 119.99645 * 185.63690 * 11 10 9 14 14 C 1.46502 * 119.99922 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47021 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47112 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00064 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47129 * 89.99864 * 20 18 16 22 22 H 1.48503 * 109.47091 * 209.99810 * 20 18 16 23 23 H 1.48501 * 109.47018 * 329.99849 * 20 18 16 24 24 H 1.09004 * 109.47158 * 300.00326 * 1 2 3 25 25 H 1.09000 * 109.47149 * 60.00203 * 1 2 3 26 26 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.97770 * 0.28686 * 4 3 2 28 28 H 1.08010 * 119.92263 * 180.02562 * 5 4 3 29 29 H 1.07996 * 120.02142 * 180.02562 * 8 6 5 30 30 H 0.96998 * 119.99614 * 204.78170 * 10 9 8 31 31 H 0.96994 * 119.99847 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46992 * 300.00192 * 14 13 11 33 33 H 1.08996 * 109.47268 * 59.99944 * 14 13 11 34 34 H 1.09002 * 109.47063 * 300.00364 * 15 14 13 35 35 H 1.08996 * 109.47238 * 59.99812 * 15 14 13 36 36 H 0.97002 * 120.00191 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2933 2.3745 -0.0059 5 6 1.9214 3.6060 -0.0111 6 6 3.3040 3.6817 -0.0116 7 9 3.9134 4.8874 -0.0173 8 6 4.0626 2.5243 -0.0058 9 6 3.4373 1.2862 -0.0001 10 7 4.2033 0.1124 0.0053 11 6 5.4591 0.1295 0.4942 12 8 5.8918 1.1350 1.0237 13 7 6.2354 -0.9679 0.3963 14 6 7.6007 -0.9491 0.9273 15 6 8.2594 -2.3093 0.6886 16 6 9.6640 -2.2898 1.2343 17 1 10.0483 -1.3968 1.7046 18 6 10.4586 -3.4120 1.1330 19 7 9.9904 -4.4997 0.5608 20 14 12.1994 -3.3881 1.8100 21 1 12.1853 -3.8300 3.2277 22 1 13.0528 -4.3063 1.0138 23 1 12.7440 -2.0091 1.7267 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2147 2.3186 -0.0058 28 1 1.3323 4.5113 -0.0153 29 1 5.1409 2.5850 -0.0058 30 1 3.8296 -0.7122 -0.3430 31 1 5.8904 -1.7698 -0.0264 32 1 8.1763 -0.1734 0.4222 33 1 7.5717 -0.7417 1.9969 34 1 7.6839 -3.0852 1.1933 35 1 8.2884 -2.5163 -0.3811 36 1 10.5495 -5.2891 0.4892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273206527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -87.592252 kcal Electronic energy + Delta-G solvation = -21154.382164 eV Core-core repulsion = 17553.623270 eV Total energy + Delta-G solvation = -3600.758894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.83754 -40.88169 -39.50442 -37.33783 -35.18071 -34.52463 -32.89733 -30.56140 -29.90204 -28.99359 -27.39677 -24.91580 -23.23054 -22.37071 -21.07938 -20.69848 -18.82382 -18.13008 -17.80768 -16.71425 -16.38929 -16.12363 -15.87812 -15.46432 -15.27770 -14.86596 -14.58542 -14.48855 -14.22326 -13.63420 -13.48398 -13.11855 -13.00526 -12.65682 -12.30316 -12.14076 -11.47677 -11.23420 -11.22400 -11.05541 -10.65218 -10.60344 -10.32303 -9.93211 -9.60185 -9.29195 -8.77746 -8.57959 -8.39841 -7.83937 -6.10794 -4.13656 1.01308 1.05875 2.69678 2.95272 3.17999 3.29338 3.35566 3.40051 3.62391 4.16482 4.35729 4.45611 4.54808 4.66182 4.83669 4.84577 5.09008 5.16547 5.24030 5.26545 5.58772 5.73165 5.89943 6.07676 6.21653 6.33117 6.37007 6.63858 6.71210 6.85481 7.04135 7.12185 7.52113 7.59332 7.87749 8.14415 8.28447 8.73449 8.92447 9.51330 11.00842 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.003119 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.561054 B = 8975.587619 C = 9937.229858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.078 3.922 4 C -0.159 4.159 5 C -0.144 4.144 6 C 0.088 3.912 7 F -0.138 7.138 8 C -0.136 4.136 9 C 0.186 3.814 10 N -0.679 5.679 11 C 0.697 3.303 12 O -0.578 6.578 13 N -0.729 5.729 14 C 0.138 3.862 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.170 0.830 30 H 0.413 0.587 31 H 0.396 0.604 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 10.235 -3.696 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.031 3.969 4 C -0.178 4.178 5 C -0.164 4.164 6 C 0.068 3.932 7 F -0.117 7.117 8 C -0.158 4.158 9 C 0.088 3.912 10 N -0.326 5.326 11 C 0.397 3.603 12 O -0.456 6.456 13 N -0.381 5.381 14 C 0.015 3.985 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.187 0.813 30 H 0.249 0.751 31 H 0.230 0.770 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.001 10.725 -3.250 23.804 hybrid contribution 0.387 -0.599 0.002 0.714 sum -20.614 10.126 -3.248 23.195 Atomic orbital electron populations 1.23061 0.78073 1.04108 1.01328 1.86036 1.21564 1.26056 1.89357 1.18619 0.90147 0.85248 1.02918 1.20783 0.99984 0.90748 1.06311 1.20822 0.92606 0.98576 1.04430 1.17358 0.90450 0.80479 1.04920 1.91492 1.83635 1.42455 1.94117 1.21336 1.03149 0.88872 1.02423 1.16524 0.86288 0.86458 1.01945 1.42582 1.13863 1.11156 1.65029 1.16058 0.80106 0.84790 0.79317 1.90868 1.73331 1.32278 1.49143 1.45594 1.16042 1.13523 1.62985 1.21702 0.77428 1.01521 0.97803 1.19335 0.95578 0.89742 0.97841 1.21037 0.97553 0.98794 1.38654 0.92160 1.24994 0.98741 0.95400 0.95145 1.69953 1.36996 1.02735 1.43619 0.86500 0.83995 0.78076 0.78921 1.20548 1.21176 1.19683 0.92582 0.92600 0.88104 0.84290 0.84620 0.81327 0.75133 0.76995 0.92387 0.92421 0.95883 0.95855 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.12 9.91 -19.80 -0.20 -3.32 16 3 C 0.08 0.88 6.70 -39.09 -0.26 0.62 16 4 C -0.16 -1.47 9.03 -39.47 -0.36 -1.83 16 5 C -0.14 -1.47 10.02 -39.49 -0.40 -1.86 16 6 C 0.09 1.15 7.29 -39.44 -0.29 0.86 16 7 F -0.14 -1.91 17.26 2.25 0.04 -1.87 16 8 C -0.14 -2.01 8.70 -39.35 -0.34 -2.35 16 9 C 0.19 2.54 6.45 -83.48 -0.54 2.01 16 10 N -0.68 -9.35 5.30 -14.11 -0.07 -9.42 16 11 C 0.70 12.06 8.37 -86.92 -0.73 11.33 16 12 O -0.58 -11.92 13.51 5.29 0.07 -11.84 16 13 N -0.73 -12.53 5.56 -65.23 -0.36 -12.89 16 14 C 0.14 2.89 5.61 -4.04 -0.02 2.86 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 20 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 25 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.14 0.85 6.29 -52.49 -0.33 0.52 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.17 2.87 5.79 -52.49 -0.30 2.57 16 30 H 0.41 4.58 8.36 -40.82 -0.34 4.23 16 31 H 0.40 5.80 8.49 -40.82 -0.35 5.45 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -32.19 316.40 -6.73 -38.92 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.20 Total: 4.74 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.49 Total: -0.15 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.30 Total: -47.52 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.12 Total: -15.16 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.19 -6.73 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273206527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.672 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds