Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36019 * 116.99884 * 2 1 4 4 C 1.38521 * 120.06046 * 359.71904 * 3 2 1 5 5 C 1.38253 * 120.03794 * 180.25098 * 4 3 2 6 6 C 1.38468 * 120.15594 * 0.05280 * 5 4 3 7 7 F 1.35093 * 119.94788 * 179.97438 * 6 5 4 8 8 C 1.38387 * 120.10803 * 359.95073 * 6 5 4 9 9 C 1.38711 * 119.96109 * 0.02562 * 8 6 5 10 10 N 1.40167 * 120.07585 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99517 * 24.77668 * 10 9 8 12 12 O 1.21590 * 120.00534 * 5.63655 * 11 10 9 13 13 N 1.34783 * 119.99645 * 185.63690 * 11 10 9 14 14 C 1.46502 * 119.99922 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47021 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47112 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00153 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00064 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99820 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47129 * 89.99864 * 20 18 16 22 22 H 1.48503 * 109.47091 * 209.99810 * 20 18 16 23 23 H 1.48501 * 109.47018 * 329.99849 * 20 18 16 24 24 H 1.09004 * 109.47158 * 300.00326 * 1 2 3 25 25 H 1.09000 * 109.47149 * 60.00203 * 1 2 3 26 26 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.97770 * 0.28686 * 4 3 2 28 28 H 1.08010 * 119.92263 * 180.02562 * 5 4 3 29 29 H 1.07996 * 120.02142 * 180.02562 * 8 6 5 30 30 H 0.96998 * 119.99614 * 204.78170 * 10 9 8 31 31 H 0.96994 * 119.99847 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46992 * 300.00192 * 14 13 11 33 33 H 1.08996 * 109.47268 * 59.99944 * 14 13 11 34 34 H 1.09002 * 109.47063 * 300.00364 * 15 14 13 35 35 H 1.08996 * 109.47238 * 59.99812 * 15 14 13 36 36 H 0.97002 * 120.00191 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2933 2.3745 -0.0059 5 6 1.9214 3.6060 -0.0111 6 6 3.3040 3.6817 -0.0116 7 9 3.9134 4.8874 -0.0173 8 6 4.0626 2.5243 -0.0058 9 6 3.4373 1.2862 -0.0001 10 7 4.2033 0.1124 0.0053 11 6 5.4591 0.1295 0.4942 12 8 5.8918 1.1350 1.0237 13 7 6.2354 -0.9679 0.3963 14 6 7.6007 -0.9491 0.9273 15 6 8.2594 -2.3093 0.6886 16 6 9.6640 -2.2898 1.2343 17 1 10.0483 -1.3968 1.7046 18 6 10.4586 -3.4120 1.1330 19 7 9.9904 -4.4997 0.5608 20 14 12.1994 -3.3881 1.8100 21 1 12.1853 -3.8300 3.2277 22 1 13.0528 -4.3063 1.0138 23 1 12.7440 -2.0091 1.7267 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2147 2.3186 -0.0058 28 1 1.3323 4.5113 -0.0153 29 1 5.1409 2.5850 -0.0058 30 1 3.8296 -0.7122 -0.3430 31 1 5.8904 -1.7698 -0.0264 32 1 8.1763 -0.1734 0.4222 33 1 7.5717 -0.7417 1.9969 34 1 7.6839 -3.0852 1.1933 35 1 8.2884 -2.5163 -0.3811 36 1 10.5495 -5.2891 0.4892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273206527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -109.985857 kcal Electronic energy + Delta-G solvation = -21155.353223 eV Core-core repulsion = 17553.623270 eV Total energy + Delta-G solvation = -3601.729954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.84793 -41.96154 -40.59077 -38.23602 -36.73312 -35.81180 -34.85212 -31.97422 -30.96432 -30.22623 -28.00043 -26.77198 -24.39262 -23.30006 -22.83213 -22.04150 -19.93331 -19.22597 -18.74103 -18.44873 -17.63301 -17.13219 -16.90463 -16.60847 -16.49004 -16.35851 -15.87139 -15.65117 -15.35917 -15.19678 -14.88900 -14.27919 -14.06352 -13.78916 -13.52480 -13.22833 -12.97640 -12.91512 -12.52674 -12.28185 -12.21246 -11.91694 -11.66849 -11.61037 -11.45388 -11.11885 -10.60521 -10.14639 -9.65182 -8.79951 -8.24089 -6.34209 0.08361 0.14382 1.41412 1.42841 1.47795 1.55401 1.92653 2.24434 2.41123 2.59406 3.06316 3.11030 3.37928 3.71755 3.92107 4.17442 4.23267 4.43217 4.47264 4.50081 4.50314 4.67190 4.83127 4.84783 4.89068 5.08130 5.13011 5.25689 5.33430 5.47544 5.58590 5.69919 5.77135 5.88847 6.16180 6.34132 6.78734 6.91307 7.34942 7.38209 8.87834 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.003119 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.561054 B = 8975.587619 C = 9937.229858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.090 3.910 4 C -0.146 4.146 5 C -0.125 4.125 6 C 0.065 3.935 7 F -0.149 7.149 8 C -0.157 4.157 9 C 0.154 3.846 10 N -0.664 5.664 11 C 0.698 3.302 12 O -0.614 6.614 13 N -0.723 5.723 14 C 0.159 3.841 15 C 0.023 3.977 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.267 1.267 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.182 0.818 28 H 0.169 0.831 29 H 0.136 0.864 30 H 0.425 0.575 31 H 0.410 0.590 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.046 10.537 -3.683 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.042 3.958 4 C -0.165 4.165 5 C -0.145 4.145 6 C 0.045 3.955 7 F -0.128 7.128 8 C -0.179 4.179 9 C 0.057 3.943 10 N -0.312 5.312 11 C 0.398 3.602 12 O -0.495 6.495 13 N -0.377 5.377 14 C 0.035 3.965 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.191 1.191 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.199 0.801 28 H 0.186 0.814 29 H 0.153 0.847 30 H 0.264 0.736 31 H 0.246 0.754 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.423 11.016 -3.262 26.089 hybrid contribution 0.936 -0.690 -0.033 1.164 sum -22.487 10.325 -3.294 24.963 Atomic orbital electron populations 1.23439 0.75592 1.05862 1.02853 1.86038 1.24070 1.25347 1.88904 1.18669 0.89191 0.86648 1.01313 1.21250 1.01857 0.89346 1.04084 1.21202 0.91188 1.00388 1.01695 1.17584 0.91750 0.79569 1.06634 1.91458 1.84091 1.42851 1.94389 1.21137 1.01901 0.90490 1.04368 1.16696 0.87595 0.85679 1.04292 1.42282 1.12509 1.12077 1.64315 1.16098 0.81028 0.83925 0.79116 1.90856 1.74395 1.33494 1.50743 1.45242 1.14877 1.14382 1.63216 1.21172 0.79046 0.99099 0.97183 1.19134 0.94734 0.91043 0.96497 1.21459 0.99120 0.98998 1.38937 0.92243 1.25855 1.02949 0.94980 0.95329 1.70053 1.38602 1.03352 1.44558 0.85450 0.78904 0.78310 0.78421 1.19772 1.20525 1.19092 0.91251 0.90703 0.86515 0.80078 0.81370 0.84652 0.73610 0.75423 0.93380 0.93409 0.97140 0.97142 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.56 9.91 -93.77 -0.93 -6.49 16 3 C 0.09 1.81 6.70 22.59 0.15 1.97 16 4 C -0.15 -2.14 9.03 22.34 0.20 -1.94 16 5 C -0.13 -2.17 10.02 22.33 0.22 -1.95 16 6 C 0.06 1.67 7.29 22.36 0.16 1.83 16 7 F -0.15 -4.18 17.26 44.97 0.78 -3.40 16 8 C -0.16 -4.82 8.70 22.42 0.19 -4.62 16 9 C 0.15 4.20 6.45 38.17 0.25 4.45 16 10 N -0.66 -18.41 5.30 -316.80 -1.68 -20.08 16 11 C 0.70 24.90 8.37 179.05 1.50 26.40 16 12 O -0.61 -26.58 13.51 -4.00 -0.05 -26.64 16 13 N -0.72 -25.49 5.56 -478.53 -2.66 -28.15 16 14 C 0.16 6.87 5.61 86.38 0.48 7.36 16 15 C 0.02 1.18 5.09 29.85 0.15 1.33 16 16 C -0.55 -30.54 9.11 25.60 0.23 -30.31 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.43 5.46 84.66 0.46 0.89 16 19 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 20 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H 0.07 0.35 7.67 -2.38 -0.02 0.33 16 25 H 0.07 0.29 7.65 -2.39 -0.02 0.28 16 26 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.18 1.12 6.29 -2.91 -0.02 1.10 16 28 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 29 H 0.14 5.03 5.79 -2.91 -0.02 5.01 16 30 H 0.43 9.22 8.36 -92.71 -0.77 8.44 16 31 H 0.41 12.13 8.49 -92.71 -0.79 11.34 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -71.46 316.40 2.46 -69.00 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.43 Total: 17.29 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.12 Total: 6.63 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.05 Total: -102.12 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.98 Total: -33.13 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.46 2.46 -69.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273206527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.987 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds