Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47250 * 2 1 4 4 H 1.08996 * 109.46833 * 54.08961 * 3 2 1 5 5 C 1.50701 * 109.47272 * 174.09292 * 3 2 1 6 6 H 1.08000 * 120.00030 * 114.63647 * 5 3 2 7 7 C 1.37875 * 120.00005 * 294.63962 * 5 3 2 8 8 N 1.31522 * 119.99635 * 352.84037 * 7 5 3 9 9 Si 1.86796 * 120.00257 * 172.84413 * 7 5 3 10 10 H 1.48505 * 109.46805 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47404 * 119.99907 * 9 7 5 12 12 H 1.48502 * 109.46962 * 239.99899 * 9 7 5 13 13 N 1.46900 * 109.46925 * 294.09148 * 3 2 1 14 14 C 1.37949 * 111.00172 * 158.77970 * 13 3 2 15 15 C 1.40250 * 121.41529 * 279.60885 * 14 13 3 16 16 C 1.43200 * 119.95688 * 359.97438 * 15 14 13 17 17 N 4.12477 * 43.84208 * 5.83204 * 2 1 3 18 18 N 1.33452 * 120.08200 * 179.73915 * 15 14 13 19 19 N 1.28362 * 123.19386 * 0.54117 * 18 15 14 20 20 C 1.33979 * 122.00335 * 359.72963 * 19 18 15 21 21 C 1.40287 * 121.54593 * 179.97438 * 20 19 18 22 22 C 1.36290 * 119.68136 * 180.08750 * 21 20 19 23 23 C 1.39205 * 121.11230 * 359.95714 * 22 21 20 24 24 C 1.36402 * 120.81316 * 0.02562 * 23 22 21 25 25 C 1.39955 * 119.49480 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47138 * 303.29328 * 1 2 3 27 27 H 1.09007 * 109.47051 * 63.29601 * 1 2 3 28 28 H 1.09000 * 109.46637 * 183.29175 * 1 2 3 29 29 H 1.09006 * 109.47441 * 240.00384 * 2 1 3 30 30 H 1.09001 * 109.47199 * 120.00045 * 2 1 3 31 31 H 0.96998 * 120.00275 * 0.31830 * 8 7 5 32 32 H 1.00902 * 110.99822 * 282.73631 * 13 3 2 33 33 H 1.08005 * 120.15898 * 0.08962 * 21 20 19 34 34 H 1.08007 * 119.44095 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.59768 * 180.02562 * 23 22 21 36 36 H 1.08001 * 120.25801 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5929 1.9860 0.8323 5 6 3.5399 1.4451 0.1462 6 1 4.1605 1.8065 -0.6604 7 6 4.1199 0.9859 1.3097 8 7 3.3666 0.6785 2.3431 9 14 5.9755 0.8007 1.4185 10 1 6.5901 1.2092 0.1298 11 1 6.4958 1.6619 2.5107 12 1 6.3156 -0.6170 1.7013 13 7 1.6702 2.0926 -1.2644 14 6 1.6759 3.4660 -1.1343 15 6 0.5972 4.1499 -0.5549 16 6 -0.5418 3.4208 -0.0840 17 7 -1.4450 2.8423 0.2903 18 7 0.6330 5.4787 -0.4377 19 7 1.6189 6.1937 -0.8432 20 6 2.7011 5.6508 -1.4169 21 6 3.7730 6.4414 -1.8571 22 6 4.8548 5.8492 -2.4373 23 6 4.9170 4.4683 -2.6014 24 6 3.8936 3.6684 -2.1851 25 6 2.7683 4.2452 -1.5853 26 1 -0.3633 0.5641 0.8590 27 1 -0.3633 0.4618 -0.9181 28 1 -0.3632 -1.0260 0.0590 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4028 0.7704 2.2851 32 1 2.2781 1.7978 -2.0138 33 1 3.7412 7.5143 -1.7368 34 1 5.6777 6.4617 -2.7752 35 1 5.7863 4.0247 -3.0640 36 1 3.9511 2.5980 -2.3172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273869786.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = 103.531203 kcal Electronic energy + Delta-G solvation = -21918.116185 eV Core-core repulsion = 18788.707002 eV Total energy + Delta-G solvation = -3129.409184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29154 -37.89137 -37.60469 -35.93547 -34.14124 -32.01857 -31.60617 -30.71795 -29.82289 -26.47476 -24.95551 -24.36825 -23.34401 -21.60567 -20.38108 -19.99875 -18.89982 -17.49662 -16.76545 -16.42121 -15.28683 -15.15324 -14.67179 -14.30259 -14.09504 -13.95081 -13.34665 -13.17810 -13.07954 -12.90081 -12.52130 -12.28540 -12.17614 -12.00823 -11.87700 -11.54378 -11.15812 -10.92121 -10.75853 -10.58065 -10.36359 -10.12526 -10.05340 -9.62842 -9.58197 -9.21583 -8.63056 -8.44237 -7.74000 -6.65005 -4.47935 0.14747 0.54857 1.82062 2.57249 2.92829 3.25175 3.27687 3.38600 3.56415 3.70110 4.02043 4.18293 4.26978 4.47266 4.59867 4.76074 4.83351 5.05029 5.12001 5.17494 5.46754 5.62089 5.73458 5.89371 5.93626 5.97956 6.10893 6.20860 6.27268 6.38060 6.45661 6.68625 6.72659 6.74467 6.92653 7.11983 7.19067 7.47871 7.75737 7.81590 8.06162 8.45817 8.77411 9.26086 10.68551 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.009278 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.966325 B = 3017.115233 C = 4659.046861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.645 4.645 6 H 0.063 0.937 7 C 0.036 3.964 8 N -0.894 5.894 9 Si 1.069 2.931 10 H -0.287 1.287 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.627 5.627 14 C 0.245 3.755 15 C 0.062 3.938 16 C 0.291 3.709 17 N -0.397 5.397 18 N -0.164 5.164 19 N -0.236 5.236 20 C 0.095 3.905 21 C -0.096 4.096 22 C -0.082 4.082 23 C -0.119 4.119 24 C -0.064 4.064 25 C -0.110 4.110 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.275 0.725 32 H 0.359 0.641 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 6.211 -10.663 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.110 3.890 4 H 0.054 0.946 5 C -0.683 4.683 6 H 0.081 0.919 7 C -0.172 4.172 8 N -0.528 5.528 9 Si 0.896 3.104 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.250 5.250 14 C 0.127 3.873 15 C -0.076 4.076 16 C -0.026 4.026 17 N -0.074 5.074 18 N -0.020 5.020 19 N -0.094 5.094 20 C -0.031 4.031 21 C -0.118 4.118 22 C -0.103 4.103 23 C -0.139 4.139 24 C -0.083 4.083 25 C -0.121 4.121 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.457 5.963 -8.453 10.632 hybrid contribution 0.779 -0.534 -1.557 1.821 sum 3.236 5.429 -10.010 11.838 Atomic orbital electron populations 1.21791 0.97435 0.99667 1.01296 1.21662 0.93505 0.98074 1.01918 1.19663 0.95531 0.90953 0.82833 0.94576 1.22536 0.90621 1.49790 1.05334 0.91856 1.25740 1.06989 0.92835 0.91619 1.70747 1.07703 1.43711 1.30608 0.83540 0.73954 0.77187 0.75686 1.21265 1.21179 1.20969 1.57547 1.54995 1.00901 1.11605 1.19723 0.88929 0.91632 0.87004 1.17535 0.91182 0.90922 1.07998 1.24204 0.91940 0.92970 0.93521 1.81125 1.10264 1.07958 1.08100 1.73034 1.17942 1.02844 1.08228 1.73786 0.97573 1.27697 1.10357 1.20258 0.95413 0.90971 0.96422 1.20669 0.91785 1.00289 0.99039 1.21017 0.97550 0.94994 0.96690 1.20964 0.98973 0.93620 1.00330 1.21020 0.91891 1.00836 0.94573 1.19119 0.95256 0.94075 1.03605 0.93608 0.93128 0.94489 0.93126 0.90738 0.91338 0.81831 0.84092 0.84919 0.85020 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.60 37.16 0.36 -2.44 16 2 C -0.11 -2.37 5.29 -26.73 -0.14 -2.51 16 3 C 0.21 4.64 1.29 -68.86 -0.09 4.55 16 4 H 0.04 0.91 6.58 -51.93 -0.34 0.57 16 5 C -0.64 -15.11 8.13 -34.44 -0.28 -15.39 16 6 H 0.06 1.39 4.92 -52.49 -0.26 1.13 16 7 C 0.04 0.91 5.19 -17.82 -0.09 0.82 16 8 N -0.89 -24.57 12.96 55.43 0.72 -23.85 16 9 Si 1.07 22.75 29.91 -169.99 -5.08 17.66 16 10 H -0.29 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.63 -11.54 5.21 -52.39 -0.27 -11.81 16 14 C 0.25 4.52 5.11 -83.09 -0.42 4.10 16 15 C 0.06 1.19 6.53 -84.48 -0.55 0.64 16 16 C 0.29 5.79 14.30 -22.47 -0.32 5.46 16 17 N -0.40 -8.07 17.70 41.84 0.74 -7.33 16 18 N -0.16 -3.12 11.41 32.42 0.37 -2.75 16 19 N -0.24 -4.22 11.53 32.20 0.37 -3.85 16 20 C 0.10 1.55 6.68 -84.83 -0.57 0.98 16 21 C -0.10 -1.21 10.00 -39.51 -0.39 -1.61 16 22 C -0.08 -0.87 9.94 -39.92 -0.40 -1.27 16 23 C -0.12 -1.39 9.96 -39.88 -0.40 -1.78 16 24 C -0.06 -0.93 8.12 -39.60 -0.32 -1.25 16 25 C -0.11 -1.84 5.72 -106.66 -0.61 -2.45 16 26 H 0.04 0.95 7.46 -51.93 -0.39 0.56 16 27 H 0.05 0.96 7.87 -51.92 -0.41 0.55 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.75 6.27 -51.93 -0.33 1.42 16 31 H 0.27 7.62 6.04 -40.82 -0.25 7.38 16 32 H 0.36 5.93 6.54 -39.29 -0.26 5.67 16 33 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.99 5.23 -52.49 -0.27 1.72 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -27.79 307.28 -6.17 -33.96 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.41 Total: 5.48 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -4.23 Total: -12.15 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 1.93 Total: -49.59 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.08 Total: 17.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.79 -6.17 -33.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273869786.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.491 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds