Wall clock time and date at job start Tue Mar 31 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99901 * 2 1 4 4 N 1.34769 * 119.99998 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00142 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47539 * 180.02562 * 5 4 2 7 7 N 1.46893 * 109.47194 * 181.31607 * 6 5 4 8 8 C 1.46897 * 111.00059 * 288.10477 * 7 6 5 9 9 C 1.50700 * 109.46963 * 170.00161 * 8 7 6 10 10 H 1.08003 * 120.00424 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99930 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00086 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47309 * 60.00309 * 13 11 9 15 15 H 1.48498 * 109.47000 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47055 * 300.00017 * 13 11 9 17 17 C 1.46909 * 110.99723 * 164.15309 * 7 6 5 18 18 C 1.50698 * 109.46998 * 288.07214 * 17 7 6 19 19 C 1.38425 * 122.53854 * 95.66514 * 18 17 7 20 20 C 1.33385 * 114.92062 * 179.97438 * 19 18 17 21 21 S 1.75885 * 109.59326 * 0.02562 * 20 19 18 22 22 C 1.33386 * 122.53864 * 275.64196 * 18 17 7 23 23 H 1.09004 * 109.47154 * 240.00524 * 1 2 3 24 24 H 1.09007 * 109.46983 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46784 * 120.00318 * 1 2 3 26 26 H 0.97002 * 120.00508 * 0.02562 * 4 2 1 27 27 H 1.08999 * 109.47271 * 59.99885 * 5 4 2 28 28 H 1.08997 * 109.47251 * 300.00221 * 5 4 2 29 29 H 1.09001 * 109.46869 * 61.31299 * 6 5 4 30 30 H 1.09000 * 109.46513 * 301.32056 * 6 5 4 31 31 H 1.08999 * 109.47395 * 289.99621 * 8 7 6 32 32 H 1.08996 * 109.47242 * 50.00646 * 8 7 6 33 33 H 0.96999 * 119.99950 * 180.02562 * 12 11 9 34 34 H 1.08994 * 109.46729 * 168.07483 * 17 7 6 35 35 H 1.08997 * 109.46808 * 48.07619 * 17 7 6 36 36 H 1.08000 * 122.54054 * 359.70614 * 19 18 17 37 37 H 1.07999 * 125.20414 * 179.97438 * 20 19 18 38 38 H 1.07996 * 125.20682 * 0.05276 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0010 7 7 5.6245 -2.6098 0.0333 8 6 6.1795 -2.1734 -1.2548 9 6 7.6631 -1.9499 -1.1128 10 1 8.1455 -2.1159 -0.1608 11 6 8.4048 -1.5346 -2.1983 12 7 7.8175 -1.3329 -3.3576 13 14 10.2438 -1.2583 -2.0224 14 1 10.8970 -2.5249 -1.6053 15 1 10.8049 -0.8170 -3.3246 16 1 10.4915 -0.2126 -0.9974 17 6 6.1427 -3.9321 0.4090 18 6 5.8789 -4.1779 1.8722 19 6 4.7736 -4.8796 2.3218 20 6 4.6902 -5.0078 3.6469 21 16 6.0636 -4.2115 4.4041 22 6 6.6929 -3.7361 2.8321 23 1 -0.3634 -0.5138 0.8901 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 1.6959 -2.0072 0.0005 27 1 4.0089 -0.6531 0.8911 28 1 4.0096 -0.6535 -0.8888 29 1 3.8123 -3.1165 -0.9008 30 1 3.7730 -3.1304 0.8786 31 1 5.9982 -2.9408 -2.0073 32 1 5.6998 -1.2437 -1.5609 33 1 8.3393 -1.0410 -4.1214 34 1 7.2159 -3.9681 0.2222 35 1 5.6447 -4.6993 -0.1840 36 1 4.0327 -5.2885 1.6509 37 1 3.8998 -5.5212 4.1742 38 1 7.5993 -3.1720 2.6690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282534652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:36 Heat of formation + Delta-G solvation = -2.804518 kcal Electronic energy + Delta-G solvation = -19734.538101 eV Core-core repulsion = 16703.669054 eV Total energy + Delta-G solvation = -3030.869046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38265 -38.46079 -36.27230 -34.33252 -32.52333 -30.70416 -29.68729 -28.10165 -27.13690 -24.87565 -22.66090 -22.53461 -20.54953 -19.91880 -18.47271 -17.30213 -16.72568 -16.44976 -15.87465 -15.49179 -15.13313 -14.72436 -14.15191 -13.76489 -13.66732 -13.27936 -12.99503 -12.65020 -12.53701 -12.39440 -12.36543 -12.13527 -11.85410 -11.50823 -11.31112 -10.95941 -10.84344 -10.70910 -10.58462 -10.33838 -9.88839 -9.73177 -9.26685 -8.80706 -8.54992 -8.43990 -8.15310 -7.36696 -6.05065 -4.06781 1.26461 1.89206 2.21028 2.80702 2.95561 3.32586 3.37400 3.38796 3.41168 4.41392 4.86748 4.99023 5.15932 5.19351 5.29693 5.31188 5.38074 5.45949 5.57331 5.65979 5.74405 5.81551 5.90002 5.97844 6.29357 6.34396 6.42013 6.46843 6.63816 6.73404 6.82952 7.21896 7.26037 7.67085 7.75023 8.01442 8.11520 8.39669 8.47271 8.99629 9.57570 11.05730 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.008469 B = 0.006717 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.295206 B = 4167.504555 C = 6900.332368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.505 3.495 3 O -0.546 6.546 4 N -0.729 5.729 5 C 0.122 3.878 6 C 0.046 3.954 7 N -0.526 5.526 8 C 0.190 3.810 9 C -0.510 4.510 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.119 3.881 18 C -0.092 4.092 19 C -0.124 4.124 20 C -0.222 4.222 21 S 0.062 5.938 22 C -0.179 4.179 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.396 0.604 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.067 0.933 31 H -0.008 1.008 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 -7.458 10.729 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.291 3.709 3 O -0.423 6.423 4 N -0.381 5.381 5 C -0.002 4.002 6 C -0.083 4.083 7 N -0.250 5.250 8 C 0.066 3.934 9 C -0.549 4.549 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.011 4.011 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.357 4.357 21 S 0.324 5.676 22 C -0.315 4.315 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.229 0.771 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.010 0.990 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.151 0.849 37 H 0.175 0.825 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.654 -6.089 12.387 17.436 hybrid contribution -0.019 -1.017 -2.086 2.321 sum -10.673 -7.106 10.301 16.448 Atomic orbital electron populations 1.21908 0.92152 1.05250 1.03928 1.20733 0.90396 0.83660 0.76123 1.90748 1.70864 1.31394 1.49297 1.46045 1.08219 1.08382 1.75458 1.21375 0.77529 0.97770 1.03479 1.22161 0.91332 0.95036 0.99802 1.61983 1.03067 1.24600 1.35396 1.19834 0.95434 0.95339 0.82812 1.21077 0.92215 1.45393 0.96196 0.91867 1.24973 0.98739 0.95505 0.95201 1.69939 1.36097 1.46679 1.00877 0.86578 0.85061 0.78645 0.77248 1.20269 1.21362 1.20128 1.20686 1.02377 0.89952 0.88117 1.19100 0.94530 0.99110 0.97613 1.20141 0.99096 1.01507 0.94779 1.25419 1.03537 1.08989 0.97752 1.84105 1.19458 1.53353 1.10637 1.25489 1.05529 1.06930 0.93547 0.89689 0.89197 0.89603 0.77085 0.90887 0.90715 0.95296 0.91413 0.98995 0.94568 0.92805 0.88346 0.95092 0.84873 0.82495 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.32 36.01 0.37 -1.16 16 2 C 0.50 7.32 7.94 -10.99 -0.09 7.24 16 3 O -0.55 -10.87 17.09 5.55 0.09 -10.77 16 4 N -0.73 -9.83 5.56 -60.29 -0.33 -10.16 16 5 C 0.12 2.12 5.71 -4.04 -0.02 2.09 16 6 C 0.05 0.76 4.93 -3.83 -0.02 0.74 16 7 N -0.53 -10.58 4.40 -237.52 -1.04 -11.62 16 8 C 0.19 4.73 4.57 -4.98 -0.02 4.71 16 9 C -0.51 -13.81 8.29 -34.44 -0.29 -14.09 16 10 H 0.06 1.68 7.25 -52.48 -0.38 1.30 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 13 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.12 2.15 5.07 -4.97 -0.03 2.13 16 18 C -0.09 -1.43 4.82 -106.25 -0.51 -1.94 16 19 C -0.12 -1.63 8.59 -41.21 -0.35 -1.98 16 20 C -0.22 -2.63 11.23 29.04 0.33 -2.31 16 21 S 0.06 0.78 23.34 -107.50 -2.51 -1.73 16 22 C -0.18 -2.73 10.99 29.04 0.32 -2.41 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.81 8.12 -51.92 -0.42 0.39 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.07 1.54 6.64 -51.93 -0.34 1.20 16 29 H 0.03 0.47 8.05 -51.93 -0.42 0.06 16 30 H 0.07 0.99 6.04 -51.93 -0.31 0.68 16 31 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 32 H 0.04 0.98 6.42 -51.93 -0.33 0.65 16 33 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 34 H 0.10 1.97 6.58 -51.93 -0.34 1.63 16 35 H 0.03 0.53 8.02 -51.93 -0.42 0.12 16 36 H 0.13 1.52 8.01 -52.49 -0.42 1.10 16 37 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -32.27 333.02 -8.88 -41.15 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.41 Total: 2.81 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.41 Total: -5.48 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.64 Total: -47.36 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.27 -8.88 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282534652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.342 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds