Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47273 * 2 1 4 4 C 1.37104 * 119.99750 * 264.77003 * 3 2 1 5 5 H 1.08002 * 119.99385 * 138.85559 * 4 3 2 6 6 C 1.38946 * 120.00418 * 318.85291 * 4 3 2 7 7 N 1.31413 * 119.99750 * 341.82778 * 6 4 3 8 8 Si 1.86796 * 120.00257 * 161.82984 * 6 4 3 9 9 H 1.48506 * 109.47005 * 89.99929 * 8 6 4 10 10 H 1.48497 * 109.47169 * 209.99687 * 8 6 4 11 11 H 1.48502 * 109.47176 * 330.00134 * 8 6 4 12 12 C 1.34768 * 120.00047 * 84.76779 * 3 2 1 13 13 O 1.21300 * 120.00327 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00066 * 0.02562 * 12 3 2 15 15 C 1.53008 * 109.47397 * 179.97438 * 14 12 3 16 16 C 1.52998 * 109.47008 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.46945 * 180.02562 * 16 15 14 18 18 N 1.29027 * 124.92114 * 89.99923 * 17 16 15 19 19 C 1.31775 * 117.13141 * 180.02562 * 18 17 16 20 20 C 1.50701 * 122.75361 * 179.97438 * 19 18 17 21 21 C 1.33644 * 114.49800 * 0.22915 * 19 18 17 22 22 S 1.70983 * 124.91742 * 270.00385 * 17 16 15 23 23 H 1.08997 * 109.47232 * 300.00032 * 1 2 3 24 24 H 1.09004 * 109.46746 * 59.99801 * 1 2 3 25 25 H 1.08996 * 109.47355 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46889 * 240.00014 * 2 1 3 27 27 H 1.08995 * 109.46942 * 120.00323 * 2 1 3 28 28 H 0.96999 * 119.99893 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.47094 * 59.99912 * 14 12 3 30 30 H 1.08999 * 109.47555 * 299.99652 * 14 12 3 31 31 H 1.09006 * 109.46672 * 60.00142 * 15 14 12 32 32 H 1.08999 * 109.46883 * 300.00553 * 15 14 12 33 33 H 1.09006 * 109.47230 * 60.00556 * 16 15 14 34 34 H 1.08998 * 109.47290 * 300.00125 * 16 15 14 35 35 H 1.08995 * 109.47022 * 89.99713 * 20 19 18 36 36 H 1.08995 * 109.46682 * 329.99820 * 20 19 18 37 37 H 1.08997 * 109.46738 * 210.00023 * 20 19 18 38 38 H 1.07996 * 126.03803 * 179.76682 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9913 -1.1824 5 1 2.0744 3.0218 -1.3535 6 6 3.0371 1.2842 -2.1606 7 7 3.6791 0.1817 -1.8452 8 14 3.0499 1.9004 -3.9240 9 1 4.2055 2.8119 -4.1214 10 1 3.1659 0.7461 -4.8509 11 1 1.7884 2.6333 -4.2013 12 6 2.1427 2.0520 1.1623 13 8 2.5475 3.1954 1.1624 14 6 1.7798 1.3811 2.4620 15 6 2.0118 2.3536 3.6202 16 6 1.6428 1.6726 4.9396 17 6 1.8706 2.6307 6.0803 18 7 0.9890 3.4515 6.5428 19 6 1.3543 4.2227 7.5470 20 6 0.4274 5.2260 8.1835 21 6 2.6158 4.0458 7.9512 22 16 3.3350 2.7877 6.9490 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.1592 -0.3122 -2.5282 29 1 2.4019 0.4967 2.6005 30 1 0.7305 1.0871 2.4386 31 1 1.3899 3.2382 3.4819 32 1 3.0612 2.6473 3.6434 33 1 2.2643 0.7879 5.0782 34 1 0.5933 1.3794 4.9161 35 1 -0.1140 4.7521 9.0022 36 1 -0.2825 5.5877 7.4397 37 1 1.0084 6.0639 8.5689 38 1 3.1070 4.5784 8.7520 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283075595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = -6.831833 kcal Electronic energy + Delta-G solvation = -19427.470064 eV Core-core repulsion = 16396.426381 eV Total energy + Delta-G solvation = -3031.043684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90891 -38.57675 -35.28583 -34.51600 -32.15657 -31.57399 -29.38812 -28.48694 -27.55608 -25.09459 -23.32122 -22.18641 -21.22735 -19.72784 -18.67248 -17.63936 -16.71706 -15.84368 -15.41102 -15.29913 -14.92838 -14.64120 -14.15089 -13.80134 -13.51131 -13.10989 -12.90053 -12.82039 -12.71482 -12.44843 -11.95980 -11.80941 -11.56325 -11.36827 -11.20882 -11.19315 -10.97814 -10.81317 -10.53067 -10.32277 -10.22136 -10.01878 -9.64022 -9.42087 -8.88052 -8.71890 -8.31814 -7.36571 -6.28093 -3.95969 0.67331 1.34509 1.72689 2.73722 3.20228 3.28068 3.33287 3.98212 4.01303 4.20743 4.77368 4.93920 5.03946 5.05824 5.14298 5.20931 5.38090 5.42182 5.52087 5.59789 5.76640 5.84532 5.87278 5.89291 5.97477 6.14430 6.20366 6.25041 6.39748 6.52237 6.60243 6.69353 6.91144 7.25329 7.62325 7.74061 8.35308 8.57756 9.25686 9.46166 10.09140 10.77234 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.003247 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.665351 B = 8621.494842 C = 8741.879317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.444 5.444 4 C -0.308 4.308 5 H 0.086 0.914 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.462 3.538 13 O -0.582 6.582 14 C -0.134 4.134 15 C -0.092 4.092 16 C -0.048 4.048 17 C 0.071 3.929 18 N -0.476 5.476 19 C 0.068 3.932 20 C -0.078 4.078 21 C -0.275 4.275 22 S 0.116 5.884 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 0.069 16.968 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.164 5.164 4 C -0.436 4.436 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.250 3.750 13 O -0.465 6.465 14 C -0.175 4.175 15 C -0.131 4.131 16 C -0.089 4.089 17 C -0.207 4.207 18 N -0.191 5.191 19 C -0.064 4.064 20 C -0.137 4.137 21 C -0.414 4.414 22 S 0.371 5.629 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.255 -0.005 16.567 16.884 hybrid contribution -0.400 0.684 -0.454 0.913 sum -3.655 0.679 16.113 16.536 Atomic orbital electron populations 1.22231 0.98311 1.00288 1.01561 1.21437 0.91538 0.85696 1.03380 1.43458 1.56285 1.11733 1.04900 1.19360 1.34695 0.98468 0.91103 0.89607 1.25405 0.94125 0.96574 1.00503 1.69927 1.29662 1.17617 1.33918 0.86104 0.78957 0.78309 0.82330 1.20316 1.20873 1.19434 1.20368 0.81784 0.87871 0.84953 1.90519 1.50145 1.18891 1.86979 1.21633 1.02432 0.99274 0.94117 1.21267 1.02942 0.98603 0.90315 1.20448 1.04019 0.94673 0.89727 1.27157 0.92275 1.00007 1.01234 1.66137 1.34466 1.06730 1.11733 1.20327 0.93434 0.98466 0.94202 1.20345 0.97725 0.95493 1.00165 1.26747 0.98926 1.07017 1.08679 1.84044 1.18006 1.33717 1.27111 0.93780 0.92494 0.93159 0.87998 0.93330 0.92366 0.90065 0.90228 0.90858 0.91177 0.89548 0.88721 0.90792 0.90509 0.90860 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.15 37.16 0.38 -2.56 16 2 C 0.10 2.22 5.41 -4.04 -0.02 2.20 16 3 N -0.44 -11.29 2.50 -114.81 -0.29 -11.58 16 4 C -0.31 -8.66 8.84 -14.93 -0.13 -8.79 16 5 H 0.09 2.53 7.82 -52.49 -0.41 2.12 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.75 11.61 55.50 0.64 -23.10 16 8 Si 0.92 20.84 29.59 -169.99 -5.03 15.81 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.46 11.33 7.59 -10.99 -0.08 11.25 16 13 O -0.58 -16.49 15.89 5.54 0.09 -16.41 16 14 C -0.13 -2.40 4.31 -27.88 -0.12 -2.52 16 15 C -0.09 -1.52 4.49 -26.73 -0.12 -1.64 16 16 C -0.05 -0.62 5.80 -27.88 -0.16 -0.78 16 17 C 0.07 0.98 6.64 -13.46 -0.09 0.89 16 18 N -0.48 -7.01 10.53 -8.06 -0.08 -7.10 16 19 C 0.07 0.84 6.74 -84.23 -0.57 0.28 16 20 C -0.08 -0.71 10.31 36.01 0.37 -0.33 16 21 C -0.27 -3.02 11.13 29.12 0.32 -2.70 16 22 S 0.12 1.36 23.18 -107.50 -2.49 -1.14 16 23 H 0.04 0.73 6.60 -51.93 -0.34 0.38 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.42 5.76 -51.92 -0.30 2.12 16 27 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.08 1.33 7.41 -51.93 -0.38 0.94 16 30 H 0.08 1.26 6.54 -51.93 -0.34 0.92 16 31 H 0.07 1.36 8.10 -51.93 -0.42 0.93 16 32 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -32.75 331.30 -7.96 -40.71 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.48 Total: 1.58 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.31 Total: -3.76 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.27 Total: -41.78 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.75 -7.96 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283075595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.875 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds