Wall clock time and date at job start Tue Mar 31 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48501 * 109.46778 * 239.99811 * 3 2 1 5 5 H 1.48501 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47101 * 120.00228 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00251 * 160.46048 * 7 2 1 9 9 N 1.36943 * 120.00105 * 340.46767 * 7 2 1 10 10 C 1.46495 * 119.99693 * 320.70486 * 9 7 2 11 11 C 1.50703 * 109.47230 * 270.00135 * 10 9 7 12 12 C 1.38527 * 120.78264 * 259.72426 * 11 10 9 13 13 C 1.38509 * 119.16491 * 179.72858 * 12 11 10 14 14 F 1.35105 * 119.62334 * 180.24910 * 13 12 11 15 15 N 1.32035 * 120.75607 * 0.55756 * 13 12 11 16 16 C 1.31908 * 121.71262 * 359.71486 * 15 13 12 17 17 C 1.38361 * 120.76341 * 0.02562 * 16 15 13 18 18 F 1.35094 * 120.42072 * 179.97438 * 17 16 15 19 19 C 1.46498 * 119.99916 * 140.70422 * 9 7 2 20 20 C 1.55236 * 110.58002 * 60.09096 * 19 9 7 21 21 C 1.54890 * 102.58458 * 203.33604 * 20 19 9 22 22 C 1.54270 * 104.31551 * 37.93007 * 21 20 19 23 23 C 1.53880 * 106.59585 * 336.32035 * 22 21 20 24 24 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47508 * 29.99780 * 10 9 7 26 26 H 1.08995 * 109.47223 * 150.00065 * 10 9 7 27 27 H 1.07995 * 120.41942 * 359.97313 * 12 11 10 28 28 H 1.08002 * 119.62265 * 179.97438 * 16 15 13 29 29 H 1.09005 * 110.42828 * 182.66826 * 19 9 7 30 30 H 1.08992 * 110.90146 * 85.04263 * 20 19 9 31 31 H 1.09002 * 110.76676 * 321.56164 * 20 19 9 32 32 H 1.09006 * 110.48825 * 279.18565 * 21 20 19 33 33 H 1.08996 * 110.48735 * 156.67734 * 21 20 19 34 34 H 1.08990 * 110.03530 * 95.61121 * 22 21 20 35 35 H 1.08998 * 110.03218 * 216.99674 * 22 21 20 36 36 H 1.09000 * 110.02825 * 119.28322 * 23 22 21 37 37 H 1.08998 * 110.03333 * 240.66727 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0436 -1.2292 -0.3123 9 7 1.3847 -2.3538 0.3976 10 6 0.4569 -2.3300 1.5310 11 6 1.2140 -2.6004 2.8057 12 6 1.2003 -3.8586 3.3851 13 6 1.9127 -4.0713 4.5538 14 9 1.9099 -5.2961 5.1240 15 7 2.5895 -3.0893 5.1202 16 6 2.6202 -1.8778 4.5994 17 6 1.9369 -1.5923 3.4307 18 9 1.9727 -0.3490 2.9036 19 6 1.6433 -3.6095 -0.3112 20 6 3.1491 -3.9792 -0.2347 21 6 3.3333 -4.9006 -1.4660 22 6 2.4441 -4.2650 -2.5546 23 6 1.3695 -3.4441 -1.8203 24 1 -0.4850 0.8401 -0.0004 25 1 -0.0180 -1.3507 1.5914 26 1 -0.3061 -3.0959 1.3922 27 1 0.6445 -4.6645 2.9292 28 1 3.1845 -1.0994 5.0914 29 1 1.0323 -4.4123 0.1017 30 1 3.3711 -4.5170 0.6869 31 1 3.7707 -3.0882 -0.3226 32 1 2.9952 -5.9119 -1.2397 33 1 4.3762 -4.9100 -1.7828 34 1 3.0419 -3.6129 -3.1913 35 1 1.9743 -5.0441 -3.1549 36 1 1.4458 -2.3935 -2.1006 37 1 0.3775 -3.8243 -2.0645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291497720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:39 Heat of formation + Delta-G solvation = -39.447521 kcal Electronic energy + Delta-G solvation = -23033.486055 eV Core-core repulsion = 19447.187662 eV Total energy + Delta-G solvation = -3586.298393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.71872 -48.15215 -39.50651 -37.75599 -34.89768 -32.56457 -30.89208 -29.98483 -27.93554 -27.23472 -26.05567 -23.58509 -23.01199 -21.24208 -19.91008 -19.24777 -17.55482 -17.28113 -16.94613 -16.29644 -15.85325 -15.43040 -14.93209 -14.78736 -14.37336 -14.21243 -13.92347 -13.45190 -13.19038 -12.96671 -12.76134 -12.60885 -12.34316 -12.05923 -11.36164 -11.26217 -11.05079 -10.76270 -10.64809 -10.51627 -10.38070 -10.23297 -10.15169 -9.84338 -9.62247 -9.41854 -9.21459 -8.57882 -8.32446 -6.72752 -5.95814 -3.53245 1.17149 1.40250 3.32119 3.37850 3.42888 3.79367 3.85765 4.39254 4.55336 4.86716 5.10441 5.19554 5.20885 5.26704 5.34739 5.44191 5.64262 5.68791 6.00449 6.07358 6.13232 6.16994 6.20681 6.29885 6.35242 6.41663 6.51492 6.54144 6.68720 6.75334 6.96106 6.99945 7.05426 7.26976 7.35471 7.72988 7.82482 8.37763 9.01060 9.63156 10.19779 11.05190 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.008900 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.767869 B = 3145.204216 C = 4714.675469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.030 3.970 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.257 4.257 8 H 0.061 0.939 9 N -0.561 5.561 10 C 0.172 3.828 11 C -0.046 4.046 12 C -0.171 4.171 13 C 0.279 3.721 14 F -0.121 7.121 15 N -0.506 5.506 16 C 0.090 3.910 17 C 0.064 3.936 18 F -0.107 7.107 19 C 0.172 3.828 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.130 4.130 24 H 0.258 0.742 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -6.256 2.769 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.172 4.172 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.386 4.386 8 H 0.079 0.921 9 N -0.278 5.278 10 C 0.046 3.954 11 C -0.058 4.058 12 C -0.193 4.193 13 C 0.125 3.875 14 F -0.100 7.100 15 N -0.221 5.221 16 C -0.068 4.068 17 C 0.041 3.959 18 F -0.085 7.085 19 C 0.065 3.935 20 C -0.175 4.175 21 C -0.160 4.160 22 C -0.158 4.158 23 C -0.169 4.169 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.162 0.838 28 H 0.185 0.815 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.157 -6.269 3.460 7.478 hybrid contribution 0.168 0.937 -0.628 1.140 sum 2.325 -5.332 2.832 6.470 Atomic orbital electron populations 1.69924 1.05682 1.26311 1.50035 1.25145 0.94878 0.98680 0.98515 0.86548 0.79548 0.83271 0.78532 1.20828 1.21566 1.20105 1.18807 0.93599 0.84850 1.41327 0.92101 1.43768 1.51660 1.04513 1.27850 1.20134 0.90399 1.04207 0.80699 1.21955 0.96159 0.90620 0.97109 1.21625 1.03028 0.98786 0.95886 1.18103 0.97102 0.81098 0.91186 1.91571 1.94869 1.38641 1.84939 1.66901 1.20649 1.00280 1.34301 1.22420 0.98327 0.92937 0.93080 1.18602 1.00706 0.82247 0.94343 1.91606 1.94354 1.37016 1.85512 1.21364 0.92881 0.87962 0.91271 1.22957 1.00045 0.98734 0.95812 1.22271 0.98739 0.98455 0.96549 1.22070 0.97684 0.98578 0.97492 1.22467 0.96305 1.01687 0.96422 0.93175 0.86886 0.93426 0.83773 0.81545 0.92991 0.93366 0.90984 0.92671 0.92901 0.92674 0.93249 0.89595 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.05 11.48 55.49 0.64 -22.41 16 2 C 0.03 0.75 4.22 -17.43 -0.07 0.68 16 3 Si 0.89 20.65 29.32 -169.99 -4.98 15.67 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.26 7.12 -15.06 -0.11 -6.37 16 8 H 0.06 1.54 6.73 -52.49 -0.35 1.19 16 9 N -0.56 -12.34 2.44 -164.93 -0.40 -12.75 16 10 C 0.17 3.60 5.20 -5.19 -0.03 3.58 16 11 C -0.05 -0.87 5.50 -104.27 -0.57 -1.44 16 12 C -0.17 -2.83 9.75 -39.37 -0.38 -3.21 16 13 C 0.28 4.73 8.41 -17.36 -0.15 4.59 16 14 F -0.12 -1.96 17.29 2.25 0.04 -1.92 16 15 N -0.51 -8.87 10.37 -13.55 -0.14 -9.01 16 16 C 0.09 1.50 11.17 -17.47 -0.20 1.31 16 17 C 0.06 1.22 7.29 -39.29 -0.29 0.93 16 18 F -0.11 -2.28 15.10 2.25 0.03 -2.25 16 19 C 0.17 3.31 3.39 -66.09 -0.22 3.08 16 20 C -0.14 -2.42 6.47 -24.55 -0.16 -2.58 16 21 C -0.12 -1.84 6.82 -25.07 -0.17 -2.01 16 22 C -0.12 -1.88 6.80 -25.61 -0.17 -2.06 16 23 C -0.13 -2.43 6.41 -25.61 -0.16 -2.60 16 24 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 25 H 0.11 2.72 5.44 -51.93 -0.28 2.43 16 26 H 0.05 0.92 7.82 -51.93 -0.41 0.51 16 27 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.43 6.63 -51.93 -0.34 1.08 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.89 6.92 -51.93 -0.36 1.53 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -25.79 310.53 -7.49 -33.28 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.67 Total: 0.82 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.69 Total: -6.11 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.09 Total: -44.16 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.17 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.98 Total: 15.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -25.79 -7.49 -33.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291497720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.166 kcal (2) G-P(sol) polarization free energy of solvation -25.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds