Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35892 * 116.99796 * 2 1 4 4 C 1.38773 * 120.00709 * 359.97438 * 3 2 1 5 5 C 1.38404 * 120.06503 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.95746 * 180.02562 * 5 4 3 7 7 C 1.38383 * 120.07881 * 0.02562 * 5 4 3 8 8 C 1.38880 * 120.01344 * 359.97438 * 7 5 4 9 9 N 1.39666 * 120.03638 * 180.02562 * 8 7 5 10 10 N 1.40096 * 119.99543 * 359.97438 * 9 8 7 11 11 C 1.34778 * 119.99724 * 180.02562 * 10 9 8 12 12 O 1.21285 * 120.00152 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47062 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.46687 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99303 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00309 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99380 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47315 * 90.00269 * 19 17 15 21 21 H 1.48504 * 109.46871 * 210.00151 * 19 17 15 22 22 H 1.48497 * 109.47502 * 329.99870 * 19 17 15 23 23 C 1.38597 * 120.00220 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.46971 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47004 * 300.00226 * 1 2 3 26 26 H 1.08996 * 109.46925 * 60.00064 * 1 2 3 27 27 H 1.07997 * 119.97044 * 0.04055 * 4 3 2 28 28 H 1.08003 * 119.98890 * 180.02562 * 7 5 4 29 29 H 0.96992 * 119.99973 * 179.97438 * 9 8 7 30 30 H 0.96992 * 120.00484 * 359.97438 * 10 9 8 31 31 H 1.09002 * 109.46947 * 300.00257 * 13 11 10 32 32 H 1.08994 * 109.47345 * 60.00016 * 13 11 10 33 33 H 1.08998 * 109.46955 * 299.99743 * 14 13 11 34 34 H 1.08999 * 109.47187 * 60.00520 * 14 13 11 35 35 H 0.97005 * 119.99905 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.03665 * 0.25651 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2902 2.3747 -0.0005 5 6 1.9173 3.6086 -0.0011 6 9 1.1795 4.7403 -0.0011 7 6 3.2991 3.6844 -0.0016 8 6 4.0585 2.5216 -0.0011 9 7 5.4531 2.5975 -0.0011 10 7 6.0865 3.8471 -0.0022 11 6 7.4323 3.9204 -0.0027 12 8 8.0950 2.9046 -0.0017 13 6 8.1137 5.2645 -0.0044 14 6 9.6310 5.0671 -0.0053 15 6 10.3124 6.4114 -0.0065 16 1 9.7223 7.3159 -0.0069 17 6 11.6891 6.4863 -0.0069 18 7 12.4076 5.3848 -0.0068 19 14 12.5337 8.1524 -0.0090 20 1 12.7579 8.5956 1.3905 21 1 13.8389 8.0449 -0.7093 22 1 11.6760 9.1414 -0.7099 23 6 3.4300 1.2835 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2118 2.3178 -0.0003 28 1 3.7869 4.6479 -0.0016 29 1 5.9830 1.7852 -0.0003 30 1 5.5566 4.6595 -0.0033 31 1 7.8194 5.8200 -0.8950 32 1 7.8201 5.8220 0.8850 33 1 9.9256 4.5116 0.8850 34 1 9.9244 4.5100 -0.8951 35 1 13.3762 5.4376 -0.0075 36 1 4.0188 0.3782 -0.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292011287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -63.685064 kcal Electronic energy + Delta-G solvation = -20701.201333 eV Core-core repulsion = 17101.479132 eV Total energy + Delta-G solvation = -3599.722201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.14737 -40.47910 -39.54621 -37.99245 -35.43486 -33.57367 -32.16213 -30.97496 -30.44255 -28.60831 -27.40297 -25.59852 -23.26076 -22.43274 -21.66165 -20.20250 -18.98046 -17.82954 -17.17151 -16.70232 -16.45145 -16.25126 -16.12902 -15.61881 -15.61848 -15.22221 -15.01308 -14.59724 -14.47689 -13.64449 -13.54481 -13.14806 -12.60420 -12.58948 -12.26506 -11.98685 -11.93528 -11.64626 -11.27996 -10.98732 -10.85736 -10.65833 -10.07731 -9.82794 -9.46484 -9.39486 -9.17348 -8.62009 -8.38580 -7.46943 -6.02218 -4.07248 0.98284 1.14751 1.88313 2.93445 2.95935 3.30415 3.36847 3.39146 3.40094 3.85546 4.28512 4.43148 4.69236 4.72858 4.79461 4.79611 4.85955 5.00222 5.12112 5.23140 5.33186 5.49860 5.83057 5.90265 5.93756 6.04967 6.05068 6.25974 6.60894 6.83763 7.03143 7.35387 7.66836 7.68353 7.74721 7.98360 8.29338 8.56457 9.00438 9.56875 11.08648 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.037909 B = 0.002663 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.429570 B =10513.100535 C =11225.782078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.207 3.793 4 C -0.307 4.307 5 C 0.192 3.808 6 F -0.135 7.135 7 C -0.275 4.275 8 C 0.289 3.711 9 N -0.530 5.530 10 N -0.539 5.539 11 C 0.511 3.489 12 O -0.530 6.530 13 C -0.119 4.119 14 C 0.038 3.962 15 C -0.529 4.529 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.239 4.239 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.437 0.563 30 H 0.420 0.580 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.497 -7.082 0.007 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.160 3.840 4 C -0.329 4.329 5 C 0.171 3.829 6 F -0.114 7.114 7 C -0.299 4.299 8 C 0.180 3.820 9 N -0.251 5.251 10 N -0.289 5.289 11 C 0.300 3.700 12 O -0.403 6.403 13 C -0.160 4.160 14 C 0.000 4.000 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.264 4.264 24 H 0.120 0.880 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.281 0.719 30 H 0.261 0.739 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.595 -7.861 0.002 25.821 hybrid contribution 0.015 1.308 0.007 1.308 sum -24.580 -6.552 0.010 25.439 Atomic orbital electron populations 1.23118 0.77927 1.04123 1.01737 1.86093 1.21757 1.26405 1.88034 1.18106 0.90955 0.83568 0.91358 1.20815 1.00817 0.90933 1.20333 1.16866 0.88152 0.81396 0.96439 1.91508 1.76978 1.49515 1.93354 1.20192 0.92150 0.98334 1.19251 1.16923 0.81544 0.92745 0.90783 1.43444 1.00986 1.00371 1.80330 1.45575 1.05798 0.98704 1.78810 1.22080 0.78797 0.94282 0.74856 1.90703 1.63585 1.37419 1.48629 1.21904 1.00802 0.90062 1.03235 1.18940 0.84954 0.97231 0.98895 1.21176 0.91516 0.92264 1.51816 0.92427 1.25024 0.97613 0.96552 0.95164 1.69989 1.05868 1.26959 1.49893 0.86561 0.79004 0.84096 0.78111 1.20625 1.21196 1.19838 1.19481 0.91813 0.96622 1.18515 0.88036 0.92336 0.92330 0.84527 0.84954 0.71879 0.73852 0.89511 0.89509 0.95605 0.95596 0.92850 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.88 10.49 -19.40 -0.20 -3.08 16 3 C 0.21 2.12 6.68 -39.25 -0.26 1.86 16 4 C -0.31 -2.99 9.01 -39.32 -0.35 -3.34 16 5 C 0.19 2.07 7.29 -39.47 -0.29 1.78 16 6 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16 7 C -0.27 -3.02 9.46 -39.29 -0.37 -3.39 16 8 C 0.29 3.31 6.72 -83.82 -0.56 2.75 16 9 N -0.53 -6.80 6.45 32.39 0.21 -6.59 16 10 N -0.54 -7.36 6.22 31.22 0.19 -7.16 16 11 C 0.51 9.18 7.95 -10.99 -0.09 9.09 16 12 O -0.53 -11.70 15.82 5.55 0.09 -11.61 16 13 C -0.12 -2.23 5.64 -27.88 -0.16 -2.38 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.24 -2.57 9.83 -39.22 -0.39 -2.95 16 24 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 27 H 0.14 1.05 6.29 -52.49 -0.33 0.72 16 28 H 0.13 1.29 6.20 -52.48 -0.33 0.96 16 29 H 0.44 5.71 8.01 -182.61 -1.46 4.25 16 30 H 0.42 4.51 6.60 -182.61 -1.21 3.31 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 318.75 15.07 4.80 4.80 Total: -1.00 -33.32 318.75 -7.35 -40.68 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.19 Total: 2.22 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.01 Total: -7.90 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 1.14 Total: -39.89 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.12 Total: -14.70 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.32 -7.35 -40.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292011287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.009 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds