Wall clock time and date at job start Tue Mar 31 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47080 * 2 1 4 4 C 1.46899 * 111.00054 * 193.95343 * 3 2 1 5 5 C 1.50706 * 109.47029 * 66.04901 * 4 3 2 6 6 H 1.08001 * 119.99321 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00148 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99869 * 179.97438 * 7 5 4 10 10 H 1.48512 * 109.46844 * 90.00390 * 9 7 5 11 11 H 1.48499 * 109.47340 * 210.00050 * 9 7 5 12 12 H 1.48496 * 109.47587 * 330.00300 * 9 7 5 13 13 C 1.39850 * 110.99746 * 70.00525 * 3 2 1 14 14 C 1.38829 * 120.08252 * 63.95332 * 13 3 2 15 15 C 1.38150 * 119.94844 * 180.02562 * 14 13 3 16 16 C 1.50706 * 119.93884 * 180.02562 * 15 14 13 17 17 C 1.38262 * 120.11291 * 359.97438 * 15 14 13 18 18 N 1.48011 * 119.91844 * 180.02562 * 17 15 14 19 19 O 1.21797 * 119.99884 * 173.54550 * 18 17 15 20 20 O 1.21802 * 119.99926 * 353.54719 * 18 17 15 21 21 C 1.38288 * 120.16464 * 0.02562 * 17 15 14 22 22 C 1.38282 * 120.04753 * 0.02562 * 21 17 15 23 23 F 1.35097 * 120.05503 * 179.97438 * 22 21 17 24 24 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46812 * 299.99204 * 1 2 3 26 26 H 1.08991 * 109.47082 * 59.99629 * 1 2 3 27 27 H 1.08997 * 109.46682 * 240.00113 * 2 1 3 28 28 H 1.09002 * 109.47274 * 120.00834 * 2 1 3 29 29 H 1.09000 * 109.47217 * 186.04785 * 4 3 2 30 30 H 1.08996 * 109.47352 * 306.05146 * 4 3 2 31 31 H 0.97005 * 119.99298 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.02012 * 359.97438 * 14 13 3 33 33 H 1.09003 * 109.46984 * 263.06243 * 16 15 14 34 34 H 1.08994 * 109.47407 * 23.06485 * 16 15 14 35 35 H 1.09004 * 109.46794 * 143.07244 * 16 15 14 36 36 H 1.07996 * 119.97710 * 179.71734 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6535 0.9855 -1.7538 6 1 2.8052 0.6883 -2.3525 7 6 4.9227 0.9512 -2.2915 8 7 5.9557 1.3127 -1.5622 9 14 5.1750 0.3901 -4.0552 10 1 5.0904 1.5614 -4.9642 11 1 6.5117 -0.2431 -4.1869 12 1 4.1234 -0.5940 -4.4169 13 6 1.7658 2.0062 1.2269 14 6 2.3706 1.5345 2.3841 15 6 2.1175 2.1500 3.5947 16 6 2.7746 1.6382 4.8507 17 6 1.2631 3.2354 3.6558 18 7 0.9954 3.8919 4.9551 19 8 0.3387 4.9169 4.9956 20 8 1.4318 3.4071 5.9837 21 6 0.6582 3.7091 2.5061 22 6 0.9060 3.0975 1.2909 23 9 0.3146 3.5598 0.1677 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 3.8113 2.4600 -0.2191 30 1 4.0028 0.7815 0.3415 31 1 6.8487 1.2882 -1.9404 32 1 3.0379 0.6865 2.3380 33 1 2.0881 0.9732 5.3748 34 1 3.6812 1.0922 4.5899 35 1 3.0296 2.4789 5.4959 36 1 -0.0122 4.5542 2.5580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292684841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:42 Heat of formation + Delta-G solvation = -16.610661 kcal Electronic energy + Delta-G solvation = -22366.950962 eV Core-core repulsion = 18769.270060 eV Total energy + Delta-G solvation = -3597.680902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74261 -42.23226 -39.87803 -37.02757 -36.62000 -32.97554 -32.57524 -31.43178 -29.96384 -27.67223 -26.86411 -25.21560 -23.24198 -22.74723 -21.99688 -20.50478 -19.12339 -18.70519 -17.61201 -16.95249 -16.62672 -16.02746 -15.73659 -15.66205 -14.93195 -14.40995 -14.20053 -13.84482 -13.73335 -13.57344 -13.12004 -12.53755 -12.47641 -12.33671 -11.98902 -11.91449 -11.54473 -11.39038 -11.23597 -11.12873 -10.93137 -10.80889 -10.66214 -10.59124 -10.23264 -9.57744 -9.25297 -8.78510 -8.66499 -7.92144 -6.24166 -4.27484 -0.16375 0.81729 1.32551 1.39208 3.10266 3.20855 3.27625 3.29929 3.91578 4.12985 4.27594 4.33194 4.50300 4.74479 5.08253 5.13125 5.18903 5.30206 5.41598 5.50035 5.57084 5.60668 5.76812 5.84390 5.92446 6.00132 6.04559 6.24409 6.39898 6.46482 6.53337 6.89342 6.93733 7.50885 7.62177 7.69008 7.83789 8.18122 8.78392 9.37888 10.86521 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.004646 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.243381 B = 6024.907938 C = 6359.148181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 N -0.509 5.509 4 C 0.199 3.801 5 C -0.516 4.516 6 H 0.068 0.932 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.903 3.097 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.150 3.850 14 C -0.132 4.132 15 C -0.014 4.014 16 C -0.130 4.130 17 C -0.043 4.043 18 N 0.040 4.960 19 O -0.173 6.173 20 O -0.161 6.161 21 C -0.090 4.090 22 C 0.113 3.887 23 F -0.110 7.110 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.003 0.997 31 H 0.265 0.735 32 H 0.154 0.846 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 -0.677 9.266 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 N -0.232 5.232 4 C 0.076 3.924 5 C -0.554 4.554 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.730 3.270 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.053 3.947 14 C -0.153 4.153 15 C -0.017 4.017 16 C -0.186 4.186 17 C -0.127 4.127 18 N 0.555 4.445 19 O -0.386 6.386 20 O -0.375 6.375 21 C -0.111 4.111 22 C 0.091 3.909 23 F -0.089 7.089 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.362 -0.708 8.198 11.732 hybrid contribution 0.548 -0.285 -0.316 0.693 sum -7.814 -0.993 7.882 11.144 Atomic orbital electron populations 1.21835 0.95979 1.01024 1.01847 1.22148 0.94559 0.87519 1.02329 1.60126 1.23470 1.17335 1.22244 1.19913 0.77588 0.97684 0.97183 1.21042 0.92991 1.44756 0.96603 0.91384 1.24979 0.95754 0.95201 0.98355 1.69946 0.99100 1.47552 1.36745 0.86418 0.77498 0.78946 0.84122 1.20440 1.21162 1.19687 1.19649 0.90981 0.92402 0.91657 1.21721 1.01418 1.01748 0.90405 1.19771 0.93004 0.91299 0.97597 1.21291 1.00602 1.03239 0.93497 1.20422 1.08349 1.00625 0.83319 1.43434 0.98354 1.00079 1.02632 1.94530 1.37566 1.12777 1.93688 1.94454 1.52406 1.67308 1.23314 1.20705 1.00220 1.00853 0.89294 1.17179 0.96536 0.95058 0.82123 1.91568 1.81304 1.87348 1.48639 0.92472 0.94050 0.91681 0.88131 0.95150 0.94805 0.97928 0.92579 0.82823 0.89456 0.90637 0.88430 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.95 37.16 0.37 -1.76 16 2 C 0.06 1.02 5.44 -3.82 -0.02 1.00 16 3 N -0.51 -9.95 4.29 -172.39 -0.74 -10.69 16 4 C 0.20 4.69 4.31 -4.97 -0.02 4.67 16 5 C -0.52 -13.36 8.31 -34.44 -0.29 -13.64 16 6 H 0.07 1.74 7.23 -52.49 -0.38 1.36 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.15 2.55 3.75 -83.67 -0.31 2.23 16 14 C -0.13 -1.97 8.16 -39.40 -0.32 -2.29 16 15 C -0.01 -0.19 5.88 -104.64 -0.62 -0.81 16 16 C -0.13 -1.44 8.67 36.01 0.31 -1.13 16 17 C -0.04 -0.62 6.83 -79.92 -0.55 -1.16 16 18 N 0.04 0.59 4.45 33.97 0.15 0.74 16 19 O -0.17 -2.66 18.46 -29.46 -0.54 -3.20 16 20 O -0.16 -2.33 15.34 -29.46 -0.45 -2.78 16 21 C -0.09 -1.27 9.53 -39.55 -0.38 -1.65 16 22 C 0.11 1.81 7.31 -39.25 -0.29 1.52 16 23 F -0.11 -1.89 17.08 2.25 0.04 -1.86 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.57 7.52 -51.93 -0.39 0.18 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 1.86 6.60 -51.93 -0.34 1.52 16 28 H 0.03 0.47 7.07 -51.93 -0.37 0.11 16 29 H 0.03 0.88 8.06 -51.93 -0.42 0.47 16 30 H 0.00 0.07 7.48 -51.93 -0.39 -0.32 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.15 2.19 7.14 -52.48 -0.37 1.82 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 35 H 0.10 1.13 5.86 -51.93 -0.30 0.82 16 36 H 0.16 1.97 7.62 -52.49 -0.40 1.57 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -27.70 312.70 -7.51 -35.21 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.19 Total: -1.77 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.20 Total: -11.53 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.15 Total: -34.21 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -1.00 Total: -5.99 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.70 -7.51 -35.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292684841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.598 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds