Wall clock time and date at job start Tue Mar 31 2020 05:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47080 * 2 1 4 4 C 1.46899 * 111.00054 * 193.95343 * 3 2 1 5 5 C 1.50706 * 109.47029 * 66.04901 * 4 3 2 6 6 H 1.08001 * 119.99321 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00148 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99869 * 179.97438 * 7 5 4 10 10 H 1.48512 * 109.46844 * 90.00390 * 9 7 5 11 11 H 1.48499 * 109.47340 * 210.00050 * 9 7 5 12 12 H 1.48496 * 109.47587 * 330.00300 * 9 7 5 13 13 C 1.39850 * 110.99746 * 70.00525 * 3 2 1 14 14 C 1.38829 * 120.08252 * 63.95332 * 13 3 2 15 15 C 1.38150 * 119.94844 * 180.02562 * 14 13 3 16 16 C 1.50706 * 119.93884 * 180.02562 * 15 14 13 17 17 C 1.38262 * 120.11291 * 359.97438 * 15 14 13 18 18 N 1.48011 * 119.91844 * 180.02562 * 17 15 14 19 19 O 1.21797 * 119.99884 * 173.54550 * 18 17 15 20 20 O 1.21802 * 119.99926 * 353.54719 * 18 17 15 21 21 C 1.38288 * 120.16464 * 0.02562 * 17 15 14 22 22 C 1.38282 * 120.04753 * 0.02562 * 21 17 15 23 23 F 1.35097 * 120.05503 * 179.97438 * 22 21 17 24 24 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46812 * 299.99204 * 1 2 3 26 26 H 1.08991 * 109.47082 * 59.99629 * 1 2 3 27 27 H 1.08997 * 109.46682 * 240.00113 * 2 1 3 28 28 H 1.09002 * 109.47274 * 120.00834 * 2 1 3 29 29 H 1.09000 * 109.47217 * 186.04785 * 4 3 2 30 30 H 1.08996 * 109.47352 * 306.05146 * 4 3 2 31 31 H 0.97005 * 119.99298 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.02012 * 359.97438 * 14 13 3 33 33 H 1.09003 * 109.46984 * 263.06243 * 16 15 14 34 34 H 1.08994 * 109.47407 * 23.06485 * 16 15 14 35 35 H 1.09004 * 109.46794 * 143.07244 * 16 15 14 36 36 H 1.07996 * 119.97710 * 179.71734 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6535 0.9855 -1.7538 6 1 2.8052 0.6883 -2.3525 7 6 4.9227 0.9512 -2.2915 8 7 5.9557 1.3127 -1.5622 9 14 5.1750 0.3901 -4.0552 10 1 5.0904 1.5614 -4.9642 11 1 6.5117 -0.2431 -4.1869 12 1 4.1234 -0.5940 -4.4169 13 6 1.7658 2.0062 1.2269 14 6 2.3706 1.5345 2.3841 15 6 2.1175 2.1500 3.5947 16 6 2.7746 1.6382 4.8507 17 6 1.2631 3.2354 3.6558 18 7 0.9954 3.8919 4.9551 19 8 0.3387 4.9169 4.9956 20 8 1.4318 3.4071 5.9837 21 6 0.6582 3.7091 2.5061 22 6 0.9060 3.0975 1.2909 23 9 0.3146 3.5598 0.1677 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 3.8113 2.4600 -0.2191 30 1 4.0028 0.7815 0.3415 31 1 6.8487 1.2882 -1.9404 32 1 3.0379 0.6865 2.3380 33 1 2.0881 0.9732 5.3748 34 1 3.6812 1.0922 4.5899 35 1 3.0296 2.4789 5.4959 36 1 -0.0122 4.5542 2.5580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292684841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:41 Heat of formation + Delta-G solvation = -30.564854 kcal Electronic energy + Delta-G solvation = -22367.556061 eV Core-core repulsion = 18769.270060 eV Total energy + Delta-G solvation = -3598.286001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.03992 -43.40707 -41.15358 -38.40139 -37.80679 -34.90814 -33.71169 -32.66112 -31.47314 -29.02346 -28.25252 -26.57554 -24.53335 -24.35974 -23.25461 -21.86342 -20.33821 -19.89702 -18.80313 -18.68725 -17.87873 -17.55235 -17.17091 -16.94616 -16.55233 -15.78736 -15.60434 -15.18357 -14.88361 -14.71521 -14.38340 -14.27964 -13.84160 -13.61276 -13.18494 -13.08183 -12.89682 -12.80339 -12.70296 -12.54994 -12.47160 -12.29008 -12.06828 -11.94417 -11.75987 -11.45708 -10.67840 -10.52863 -9.98766 -9.47905 -8.26980 -6.36827 -1.35518 -0.35470 0.11948 0.21261 1.41315 1.42656 1.52931 1.90217 2.35391 2.65874 2.88917 3.07958 3.16610 3.36199 3.54204 3.93251 3.96629 4.16549 4.24057 4.34171 4.47758 4.58784 4.64205 4.67169 4.78813 4.90958 4.95239 4.97024 5.01447 5.08844 5.18714 5.31094 5.41277 5.59527 5.93762 5.99370 6.44337 6.51261 6.75984 7.32953 8.83986 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.004646 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.243381 B = 6024.907938 C = 6359.148181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.519 5.519 4 C 0.217 3.783 5 C -0.526 4.526 6 H 0.067 0.933 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.128 3.872 14 C -0.131 4.131 15 C -0.003 4.003 16 C -0.130 4.130 17 C -0.047 4.047 18 N 0.039 4.961 19 O -0.192 6.192 20 O -0.143 6.143 21 C -0.076 4.076 22 C 0.100 3.900 23 F -0.121 7.121 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.000 1.000 30 H -0.010 1.010 31 H 0.266 0.734 32 H 0.159 0.841 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -1.451 10.013 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 N -0.241 5.241 4 C 0.093 3.907 5 C -0.565 4.565 6 H 0.085 0.915 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.186 1.186 13 C 0.032 3.968 14 C -0.152 4.152 15 C -0.005 4.005 16 C -0.186 4.186 17 C -0.131 4.131 18 N 0.554 4.446 19 O -0.399 6.399 20 O -0.362 6.362 21 C -0.096 4.096 22 C 0.079 3.921 23 F -0.099 7.099 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.125 -1.448 8.934 12.852 hybrid contribution 0.759 -0.049 -0.413 0.865 sum -8.366 -1.498 8.521 12.035 Atomic orbital electron populations 1.21744 0.93630 1.02672 1.01518 1.22201 0.96408 0.86163 1.01954 1.59922 1.20712 1.19044 1.24441 1.19471 0.80156 0.95019 0.96077 1.21364 0.93055 1.44312 0.97729 0.91524 1.25811 0.95531 0.95267 1.02341 1.70058 0.99513 1.48836 1.38568 0.85414 0.77659 0.78590 0.79177 1.20359 1.20751 1.18564 1.19707 0.92552 0.93200 0.91336 1.21700 1.01285 1.01992 0.90187 1.19996 0.92036 0.90434 0.98050 1.21398 1.01420 1.03577 0.92183 1.20528 1.08472 1.00803 0.83277 1.43447 0.98361 1.00066 1.02693 1.94544 1.38381 1.13206 1.93754 1.94446 1.51553 1.66949 1.23285 1.20794 0.99719 1.00711 0.88413 1.17236 0.97167 0.95267 0.82468 1.91536 1.81570 1.87511 1.49329 0.89785 0.93604 0.92720 0.90111 0.93834 0.98187 0.99224 0.92513 0.82380 0.87544 0.89261 0.88516 0.80230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.95 71.98 0.72 -3.04 16 2 C 0.06 1.95 5.44 86.31 0.47 2.42 16 3 N -0.52 -20.52 4.29 -699.32 -3.00 -23.52 16 4 C 0.22 10.54 4.31 85.56 0.37 10.91 16 5 C -0.53 -27.76 8.31 25.60 0.21 -27.54 16 6 H 0.07 3.45 7.23 -2.91 -0.02 3.43 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -52.83 13.29 21.45 0.28 -52.55 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 C 0.13 4.35 3.75 38.21 0.14 4.49 16 14 C -0.13 -3.78 8.16 22.39 0.18 -3.60 16 15 C 0.00 -0.07 5.88 -19.88 -0.12 -0.19 16 16 C -0.13 -2.52 8.67 71.24 0.62 -1.90 16 17 C -0.05 -1.25 6.83 36.39 0.25 -1.00 16 18 N 0.04 1.07 4.45 -46.42 -0.21 0.87 16 19 O -0.19 -5.57 18.46 18.89 0.35 -5.22 16 20 O -0.14 -3.78 15.34 18.88 0.29 -3.49 16 21 C -0.08 -2.05 9.53 22.29 0.21 -1.84 16 22 C 0.10 3.17 7.31 22.48 0.16 3.33 16 23 F -0.12 -4.17 17.08 44.97 0.77 -3.40 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.20 7.52 -2.38 -0.02 1.18 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 3.01 6.60 -2.39 -0.02 2.99 16 28 H 0.04 1.33 7.07 -2.39 -0.02 1.31 16 29 H 0.00 0.00 8.06 -2.39 -0.02 -0.02 16 30 H -0.01 -0.50 7.48 -2.39 -0.02 -0.52 16 31 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 32 H 0.16 4.39 7.14 -2.91 -0.02 4.37 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 35 H 0.10 1.96 5.86 -2.39 -0.01 1.94 16 36 H 0.18 4.10 7.62 -2.91 -0.02 4.08 16 Total: -1.00 -59.34 312.70 5.30 -54.04 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.11 Total: 6.20 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 3.68 Total: -16.98 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.92 Total: -75.21 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.64 Total: -8.71 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.77 Total: -3.40 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -59.34 5.30 -54.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292684841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.472 kcal (2) G-P(sol) polarization free energy of solvation -59.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds