Wall clock time and date at job start Tue Mar 31 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00386 * 2 1 4 4 N 1.46902 * 109.47693 * 124.15340 * 3 2 1 5 5 C 1.46896 * 110.99930 * 300.36376 * 4 3 2 6 6 C 1.50699 * 109.47134 * 288.24356 * 5 4 3 7 7 H 1.08001 * 119.99850 * 354.75787 * 6 5 4 8 8 C 1.37881 * 120.00316 * 174.76840 * 6 5 4 9 9 N 1.31514 * 119.99816 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00216 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47391 * 59.99437 * 10 8 6 12 12 H 1.48503 * 109.47364 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47193 * 299.99627 * 10 8 6 14 14 C 1.46898 * 110.99444 * 64.31303 * 4 3 2 15 15 C 1.50696 * 109.47228 * 66.04688 * 14 4 3 16 16 C 1.33648 * 126.03413 * 89.99986 * 15 14 4 17 17 N 1.31783 * 114.49724 * 180.02562 * 16 15 14 18 18 C 1.29030 * 117.12674 * 359.97438 * 17 16 15 19 19 C 1.50698 * 124.91516 * 180.02562 * 18 17 16 20 20 H 1.09001 * 109.47275 * 195.02229 * 19 18 17 21 21 C 1.52998 * 109.47086 * 75.02662 * 19 18 17 22 22 O 1.42899 * 109.47444 * 315.02593 * 19 18 17 23 23 S 1.70978 * 110.16677 * 359.72836 * 18 17 16 24 24 H 1.07999 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99890 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00346 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47054 * 4.15547 * 3 2 1 28 28 H 1.09000 * 109.47518 * 244.16029 * 3 2 1 29 29 H 1.09004 * 109.47326 * 48.24085 * 5 4 3 30 30 H 1.08998 * 109.46993 * 168.24099 * 5 4 3 31 31 H 0.96999 * 120.00454 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47228 * 186.05083 * 14 4 3 33 33 H 1.09001 * 109.47155 * 306.04948 * 14 4 3 34 34 H 1.07995 * 122.75084 * 359.97438 * 16 15 14 35 35 H 1.09003 * 109.47626 * 59.99711 * 21 19 18 36 36 H 1.09002 * 109.47265 * 179.97438 * 21 19 18 37 37 H 1.08999 * 109.47178 * 299.99685 * 21 19 18 38 38 H 0.96696 * 113.99782 * 59.99671 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9818 1.3404 1.1461 5 6 2.2484 1.2118 2.4124 6 6 1.4859 2.4833 2.6826 7 1 1.6066 3.3346 2.0290 8 6 0.6343 2.5599 3.7642 9 7 0.4871 1.5232 4.5599 10 14 -0.3102 4.1362 4.0995 11 1 -1.1785 4.4500 2.9364 12 1 -1.1508 3.9614 5.3112 13 1 0.6472 5.2502 4.3172 14 6 4.0126 0.3006 1.0269 15 6 4.8995 0.6054 -0.1527 16 6 6.0162 1.3393 -0.1278 17 7 6.6164 1.4608 -1.2948 18 6 6.0685 0.8698 -2.3025 19 6 6.6037 0.8921 -3.7110 20 1 5.8299 0.5518 -4.3992 21 6 7.8174 -0.0341 -3.8102 22 8 6.9920 2.2244 -4.0520 23 16 4.6519 0.0507 -1.8067 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3576 2.1322 0.0745 28 1 2.6331 1.3957 -0.9249 29 1 1.5507 0.3771 2.3451 30 1 2.9535 1.0315 3.2239 31 1 -0.1123 1.5769 5.3207 32 1 4.6128 0.2779 1.9365 33 1 3.5358 -0.6688 0.8820 34 1 6.3951 1.7962 0.7744 35 1 7.5213 -1.0503 -3.5501 36 1 8.2043 -0.0183 -4.8291 37 1 8.5913 0.3062 -3.1221 38 1 7.6792 2.5923 -3.4798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292801996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:33 Heat of formation + Delta-G solvation = 17.815000 kcal Electronic energy + Delta-G solvation = -19731.985978 eV Core-core repulsion = 16702.011061 eV Total energy + Delta-G solvation = -3029.974917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82413 -37.75993 -37.02095 -32.86318 -32.73698 -31.61260 -30.05715 -27.29094 -26.45700 -25.13643 -23.57735 -22.50175 -21.03308 -19.50886 -18.98265 -18.07851 -16.72174 -16.24975 -15.48327 -15.30600 -15.04960 -14.72867 -14.38096 -14.28269 -14.03506 -13.79603 -13.34323 -12.69849 -12.36761 -12.23181 -12.14028 -11.98356 -11.51400 -11.25347 -11.03845 -10.95072 -10.79848 -10.77888 -10.62436 -10.52246 -10.00029 -9.54384 -9.33800 -9.16508 -8.72115 -8.66722 -8.43228 -7.35914 -6.04105 -4.05244 0.77450 1.39612 1.83708 2.82331 2.94376 3.32394 3.36556 3.39840 3.92546 4.30283 4.41266 4.70146 4.79541 4.99104 5.11688 5.19173 5.31641 5.40179 5.44575 5.46534 5.59277 5.71051 5.81193 5.92915 6.05548 6.09524 6.32926 6.37219 6.60183 7.08958 7.15381 7.26306 7.36415 7.37025 7.76076 7.78985 7.99171 8.10940 8.47169 9.01964 9.58733 11.06341 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027468 B = 0.004012 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.131277 B = 6977.988368 C = 7278.967197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.184 4.184 3 C 0.085 3.915 4 N -0.522 5.522 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.121 3.879 15 C -0.179 4.179 16 C 0.039 3.961 17 N -0.463 5.463 18 C -0.012 4.012 19 C 0.190 3.810 20 H 0.114 0.886 21 C -0.177 4.177 22 O -0.549 6.549 23 S 0.124 5.876 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.009 0.991 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.178 0.822 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 -5.705 -14.432 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.203 4.203 3 C -0.043 4.043 4 N -0.245 5.245 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.010 4.010 15 C -0.301 4.301 16 C -0.112 4.112 17 N -0.178 5.178 18 C -0.290 4.290 19 C 0.127 3.873 20 H 0.132 0.868 21 C -0.236 4.236 22 O -0.354 6.354 23 S 0.378 5.622 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.760 -5.677 -15.310 19.024 hybrid contribution -0.350 0.390 1.741 1.818 sum 9.410 -5.287 -13.570 17.339 Atomic orbital electron populations 1.23710 0.95963 1.01259 1.00128 1.23467 0.96782 0.99474 1.00622 1.21345 0.94726 0.94693 0.93558 1.62501 1.13749 1.43715 1.04572 1.19805 0.92274 0.97460 0.83789 1.21054 1.23810 0.98561 1.10832 0.92022 1.24949 0.96873 0.96465 0.96105 1.69940 1.37973 1.29680 1.16202 0.86592 0.79827 0.83657 0.77541 1.20291 1.21389 1.20174 1.20537 0.93191 0.94439 0.92791 1.26120 1.01331 1.04699 0.97900 1.21648 0.93592 1.00077 0.95871 1.66076 1.32601 1.20485 0.98654 1.27813 0.97816 1.02572 1.00772 1.20350 0.96296 0.84087 0.86588 0.86837 1.22473 0.97986 0.99974 1.03173 1.86541 1.61606 1.28560 1.58726 1.83938 1.25012 1.49844 1.03450 0.88363 0.89562 0.88839 0.89505 0.92089 0.97348 0.95752 0.92903 0.88988 0.94061 0.80552 0.91309 0.90822 0.91390 0.76564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 14.32 29.02 0.42 -2.59 16 2 C -0.18 -3.27 7.41 -36.03 -0.27 -3.53 16 3 C 0.09 1.62 5.47 -4.98 -0.03 1.60 16 4 N -0.52 -10.78 4.65 -238.97 -1.11 -11.89 16 5 C 0.19 4.76 4.58 -4.98 -0.02 4.74 16 6 C -0.50 -13.81 8.52 -34.44 -0.29 -14.10 16 7 H 0.06 1.70 7.66 -52.49 -0.40 1.30 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 10 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.12 2.07 5.34 -4.98 -0.03 2.04 16 15 C -0.18 -2.74 5.31 -35.92 -0.19 -2.93 16 16 C 0.04 0.58 11.25 -19.18 -0.22 0.36 16 17 N -0.46 -6.65 10.37 -11.86 -0.12 -6.77 16 18 C -0.01 -0.15 6.28 -13.46 -0.08 -0.23 16 19 C 0.19 1.92 4.09 -27.89 -0.11 1.81 16 20 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 21 C -0.18 -1.40 9.52 37.16 0.35 -1.05 16 22 O -0.55 -6.20 13.32 -35.23 -0.47 -6.67 16 23 S 0.12 1.61 21.72 -107.50 -2.34 -0.73 16 24 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 25 H 0.09 1.33 8.06 -52.48 -0.42 0.91 16 26 H 0.09 1.56 6.80 -52.48 -0.36 1.20 16 27 H 0.09 1.82 7.03 -51.93 -0.37 1.46 16 28 H 0.06 1.07 5.87 -51.93 -0.30 0.77 16 29 H 0.01 0.23 6.71 -51.93 -0.35 -0.12 16 30 H 0.02 0.64 7.81 -51.93 -0.41 0.24 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.53 7.86 -51.93 -0.41 1.13 16 33 H 0.04 0.69 6.35 -51.93 -0.33 0.36 16 34 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.39 3.62 8.90 45.56 0.41 4.02 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -30.24 331.59 -8.50 -38.74 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.60 Total: 3.68 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.57 Total: -12.38 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.50 Total: -44.11 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.47 Total: -6.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.34 Total: -0.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.24 -8.50 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.556 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds