Wall clock time and date at job start Tue Mar 31 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99731 * 2 1 4 4 N 1.46898 * 109.46802 * 125.70455 * 3 2 1 5 5 C 1.46897 * 111.00056 * 66.76871 * 4 3 2 6 6 C 1.50700 * 109.47016 * 66.04685 * 5 4 3 7 7 H 1.08001 * 119.99731 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00272 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99959 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00309 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47176 * 89.99903 * 10 8 6 12 12 H 1.48499 * 109.47192 * 210.00506 * 10 8 6 13 13 H 1.48507 * 109.46909 * 330.00397 * 10 8 6 14 14 C 1.46900 * 110.99979 * 302.81460 * 4 3 2 15 15 C 1.50699 * 109.47640 * 288.20988 * 14 4 3 16 16 C 1.33638 * 126.03932 * 95.62604 * 15 14 4 17 17 N 1.31785 * 114.49734 * 179.79350 * 16 15 14 18 18 C 1.29021 * 117.12456 * 0.52418 * 17 16 15 19 19 C 1.50703 * 124.91433 * 179.75104 * 18 17 16 20 20 H 1.09005 * 109.47161 * 164.95570 * 19 18 17 21 21 C 1.52996 * 109.47245 * 284.95840 * 19 18 17 22 22 O 1.42897 * 109.47146 * 44.95778 * 19 18 17 23 23 S 1.70970 * 110.16944 * 359.71277 * 18 17 16 24 24 H 1.07997 * 120.00273 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99938 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99851 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47279 * 5.70419 * 3 2 1 28 28 H 1.08994 * 109.46724 * 245.70428 * 3 2 1 29 29 H 1.08998 * 109.47173 * 186.04274 * 5 4 3 30 30 H 1.08992 * 109.47360 * 306.04532 * 5 4 3 31 31 H 0.96992 * 120.00165 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47081 * 48.20909 * 14 4 3 33 33 H 1.09000 * 109.47308 * 168.20912 * 14 4 3 34 34 H 1.07999 * 122.75191 * 359.97438 * 16 15 14 35 35 H 1.09005 * 109.47261 * 59.99792 * 21 19 18 36 36 H 1.09005 * 109.47540 * 179.97438 * 21 19 18 37 37 H 1.09001 * 109.46951 * 300.00164 * 21 19 18 38 38 H 0.96703 * 114.00290 * 299.99770 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0083 1.3251 1.1247 5 6 4.0693 0.3263 0.9387 6 6 4.9162 0.7082 -0.2479 7 1 4.6893 1.6036 -0.8075 8 6 5.9815 -0.0849 -0.6184 9 7 6.2582 -1.1750 0.0634 10 14 7.0309 0.3881 -2.0896 11 1 8.1514 1.2532 -1.6407 12 1 7.5761 -0.8390 -2.7237 13 1 6.1993 1.1264 -3.0739 14 6 2.3112 1.1210 2.4015 15 6 1.5152 2.3545 2.7422 16 6 0.2190 2.5504 2.4823 17 7 -0.2490 3.7147 2.8848 18 6 0.5826 4.5159 3.4603 19 6 0.2386 5.8873 3.9819 20 1 1.0318 6.2335 4.6447 21 6 0.0947 6.8581 2.8082 22 8 -0.9931 5.8272 4.7040 23 16 2.1310 3.7962 3.5464 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3596 2.1311 0.1021 28 1 2.6113 1.4084 -0.9366 29 1 4.6923 0.2873 1.8322 30 1 3.6210 -0.6520 0.7653 31 1 7.0073 -1.7331 -0.1974 32 1 1.6391 0.2671 2.3161 33 1 3.0416 0.9313 3.1880 34 1 -0.3952 1.8137 1.9859 35 1 -0.6984 6.5120 2.1454 36 1 -0.1545 7.8500 3.1854 37 1 1.0342 6.9040 2.2574 38 1 -1.7447 5.5262 4.1752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292801997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:35 Heat of formation + Delta-G solvation = 15.770176 kcal Electronic energy + Delta-G solvation = -19768.363047 eV Core-core repulsion = 16738.299460 eV Total energy + Delta-G solvation = -3030.063587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83204 -37.80815 -36.97163 -33.04850 -32.61793 -31.65644 -30.16619 -27.18685 -26.53362 -25.19319 -23.42499 -22.51317 -21.17756 -19.39846 -19.11609 -18.05741 -16.68460 -16.35217 -15.36997 -15.31711 -14.99424 -14.92748 -14.39810 -14.20165 -14.02610 -13.76724 -13.21774 -12.74354 -12.58278 -12.25006 -12.08131 -11.89119 -11.48821 -11.43387 -11.00755 -10.93129 -10.87408 -10.71447 -10.68722 -10.53135 -9.99978 -9.49157 -9.38077 -9.10706 -8.91730 -8.66747 -8.49299 -7.40660 -6.09864 -4.11400 0.82952 1.47349 1.94895 2.62324 2.92863 3.28010 3.34421 3.37581 3.97325 4.31553 4.37164 4.74816 4.85884 4.92700 5.15378 5.23360 5.27773 5.35242 5.48628 5.49959 5.61794 5.66114 5.88361 5.94416 5.99891 6.03619 6.31663 6.32807 6.54583 6.94959 6.99838 7.23834 7.24584 7.36809 7.69853 7.80489 7.94985 8.06011 8.41129 8.95378 9.53094 11.00834 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.004213 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.609527 B = 6643.720655 C = 7161.231214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.084 3.916 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.119 3.881 15 C -0.175 4.175 16 C 0.021 3.979 17 N -0.465 5.465 18 C -0.020 4.020 19 C 0.190 3.810 20 H 0.114 0.886 21 C -0.178 4.178 22 O -0.551 6.551 23 S 0.156 5.844 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.030 0.970 30 H -0.001 1.001 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.172 0.828 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 10.069 6.034 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.180 4.180 3 C -0.044 4.044 4 N -0.246 5.246 5 C 0.066 3.934 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.011 4.011 15 C -0.297 4.297 16 C -0.131 4.131 17 N -0.180 5.180 18 C -0.298 4.298 19 C 0.128 3.872 20 H 0.132 0.868 21 C -0.237 4.237 22 O -0.356 6.356 23 S 0.411 5.589 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.048 0.952 30 H 0.017 0.983 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.189 0.811 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.741 11.098 6.890 16.912 hybrid contribution -0.543 -1.725 -1.849 2.586 sum -11.284 9.373 5.042 15.511 Atomic orbital electron populations 1.23713 0.95939 1.00922 1.04603 1.23892 0.96263 1.01381 0.96429 1.21329 0.93869 0.92497 0.96694 1.62426 1.10950 1.52528 0.98742 1.19807 0.87671 0.88103 0.97814 1.21106 1.12184 1.08914 1.12440 0.91855 1.24961 0.97441 0.94930 0.97075 1.69947 1.29367 1.14286 1.40110 0.86509 0.80573 0.77834 0.82579 1.20590 1.21306 1.19847 1.20503 0.95928 0.89939 0.94769 1.26146 0.97545 1.00812 1.05235 1.21657 0.93138 0.94755 1.03514 1.66047 1.36578 1.03510 1.11870 1.27801 0.94580 1.02558 1.04878 1.20342 0.87867 0.85907 0.93102 0.86805 1.22472 1.03619 0.99364 0.98209 1.86526 1.18214 1.89478 1.41401 1.83996 1.12253 1.09141 1.53515 0.89265 0.89134 0.87018 0.92269 0.88728 0.95162 0.98295 0.92855 0.92619 0.90010 0.81144 0.91458 0.90892 0.91082 0.76673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.03 13.76 29.01 0.40 -2.63 16 2 C -0.16 -2.71 7.37 -36.03 -0.27 -2.98 16 3 C 0.08 1.56 5.46 -4.98 -0.03 1.53 16 4 N -0.52 -10.56 4.65 -238.97 -1.11 -11.68 16 5 C 0.19 4.65 4.58 -4.98 -0.02 4.63 16 6 C -0.51 -13.62 8.42 -34.44 -0.29 -13.91 16 7 H 0.06 1.69 7.15 -52.49 -0.38 1.32 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 10 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.12 2.05 5.34 -4.98 -0.03 2.02 16 15 C -0.18 -2.72 5.52 -35.92 -0.20 -2.92 16 16 C 0.02 0.30 10.47 -19.18 -0.20 0.10 16 17 N -0.46 -6.66 10.37 -11.86 -0.12 -6.78 16 18 C -0.02 -0.27 6.28 -13.46 -0.08 -0.35 16 19 C 0.19 1.99 4.10 -27.88 -0.11 1.88 16 20 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 21 C -0.18 -1.57 9.52 37.16 0.35 -1.22 16 22 O -0.55 -6.09 13.32 -35.23 -0.47 -6.56 16 23 S 0.16 2.17 23.18 -107.50 -2.49 -0.32 16 24 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 25 H 0.09 1.19 7.18 -52.49 -0.38 0.81 16 26 H 0.11 2.10 6.85 -52.49 -0.36 1.75 16 27 H 0.06 1.02 6.61 -51.93 -0.34 0.68 16 28 H 0.09 1.94 6.70 -51.93 -0.35 1.59 16 29 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 30 H 0.00 -0.02 6.46 -51.93 -0.34 -0.35 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.06 0.93 6.61 -51.93 -0.34 0.59 16 33 H 0.08 1.41 7.81 -51.93 -0.41 1.01 16 34 H 0.17 2.34 6.78 -52.49 -0.36 1.99 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.38 3.51 8.90 45.56 0.41 3.92 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -29.16 329.78 -8.58 -37.74 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.49 Total: 3.97 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.57 Total: -12.37 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.50 Total: -43.52 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.47 Total: -6.56 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.49 Total: -0.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.16 -8.58 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.506 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds