Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00501 * 2 1 4 4 H 1.48503 * 109.47031 * 270.00617 * 3 2 1 5 5 H 1.48502 * 109.47080 * 30.00001 * 3 2 1 6 6 H 1.48500 * 109.47502 * 150.00397 * 3 2 1 7 7 C 1.37879 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00312 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99999 * 170.00231 * 10 9 7 12 12 C 1.50704 * 109.47135 * 199.95475 * 11 10 9 13 13 C 1.38534 * 120.78522 * 253.77295 * 12 11 10 14 14 C 1.38511 * 119.16480 * 179.73231 * 13 12 11 15 15 F 1.35096 * 119.61845 * 180.24710 * 14 13 12 16 16 N 1.32031 * 120.75490 * 0.54628 * 14 13 12 17 17 C 1.31908 * 121.72011 * 359.72458 * 16 14 13 18 18 C 1.38371 * 120.75649 * 359.97438 * 17 16 14 19 19 F 1.35101 * 120.41537 * 179.97438 * 18 17 16 20 20 C 1.46897 * 111.00366 * 293.96020 * 10 9 7 21 21 C 1.53005 * 109.47013 * 294.52078 * 20 10 9 22 22 C 1.52995 * 117.50038 * 245.01438 * 21 20 10 23 23 C 1.52998 * 117.49871 * 176.35388 * 21 20 10 24 24 H 0.97001 * 119.99563 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46281 * 60.00215 * 9 7 2 26 26 H 1.08996 * 109.47139 * 300.00871 * 9 7 2 27 27 H 1.08993 * 109.47072 * 319.95248 * 11 10 9 28 28 H 1.08991 * 109.46963 * 79.95391 * 11 10 9 29 29 H 1.07995 * 120.41182 * 359.97090 * 13 12 11 30 30 H 1.07999 * 119.62731 * 179.97438 * 17 16 14 31 31 H 1.08995 * 109.47302 * 174.52122 * 20 10 9 32 32 H 1.09003 * 109.47363 * 54.52074 * 20 10 9 33 33 H 1.08999 * 115.54880 * 30.68636 * 21 20 10 34 34 H 1.08998 * 117.49858 * 0.02562 * 22 21 20 35 35 H 1.08996 * 117.49995 * 145.01664 * 22 21 20 36 36 H 1.09000 * 117.49545 * 214.97975 * 23 21 20 37 37 H 1.08999 * 117.50224 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0018 11 6 1.5211 -4.8936 0.2363 12 6 2.5198 -5.9176 0.7109 13 6 2.9460 -6.9343 -0.1280 14 6 3.8692 -7.8541 0.3412 15 9 4.2950 -8.8464 -0.4708 16 7 4.3334 -7.7757 1.5747 17 6 3.9458 -6.8246 2.4024 18 6 3.0308 -5.8672 2.0015 19 9 2.6381 -4.8964 2.8552 20 6 2.9699 -3.6536 -1.2556 21 6 2.0262 -3.9642 -2.4191 22 6 2.2324 -5.2853 -3.1627 23 6 2.6193 -3.9629 -3.8295 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 0.7514 -4.7576 0.9959 28 1 1.0607 -5.2372 -0.6900 29 1 2.5662 -7.0064 -1.1364 30 1 4.3471 -6.7927 3.4046 31 1 3.7348 -4.4274 -1.1916 32 1 3.4446 -2.6864 -1.4210 33 1 1.0032 -3.6064 -2.3031 34 1 3.0401 -5.9334 -2.8226 35 1 1.3451 -5.7965 -3.5360 36 1 1.9863 -3.6047 -4.6413 37 1 3.6819 -3.7412 -3.9284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294940592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -19.199814 kcal Electronic energy + Delta-G solvation = -22323.602744 eV Core-core repulsion = 18738.182358 eV Total energy + Delta-G solvation = -3585.420386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.07845 -48.72747 -40.09005 -38.22503 -35.46688 -33.37539 -32.15245 -30.47775 -27.73585 -27.16010 -24.54653 -23.78805 -22.28953 -21.99951 -21.68305 -19.38406 -18.04492 -17.54579 -17.34093 -16.38339 -16.27110 -15.62841 -15.37985 -14.94572 -14.87939 -14.41810 -14.23895 -14.00027 -13.65643 -13.49330 -13.15097 -12.76945 -12.46555 -12.16027 -11.84864 -11.54159 -11.34573 -11.25443 -11.07378 -10.76009 -10.63459 -10.18101 -9.97595 -9.81459 -9.77188 -9.54451 -9.22790 -8.79474 -8.49046 -7.41452 -6.07911 -4.08704 0.71072 0.88952 3.28995 3.32658 3.35879 3.40215 3.43026 4.01533 4.07329 4.30153 4.41311 4.59860 4.70562 4.89189 5.02848 5.19156 5.25660 5.28736 5.35428 5.47299 5.56239 5.74306 5.77662 5.84222 5.96508 6.05067 6.06603 6.23747 6.28963 6.38384 6.52472 6.74075 7.15405 7.24420 7.39004 7.70125 7.95325 8.06600 8.41948 8.97409 9.55386 11.02919 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.005410 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.552300 B = 5174.250343 C = 6191.969828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.523 5.523 11 C 0.082 3.918 12 C -0.025 4.025 13 C -0.164 4.164 14 C 0.288 3.712 15 F -0.113 7.113 16 N -0.494 5.494 17 C 0.101 3.899 18 C 0.067 3.933 19 F -0.110 7.110 20 C 0.092 3.908 21 C -0.172 4.172 22 C -0.194 4.194 23 C -0.175 4.175 24 H 0.261 0.739 25 H 0.000 1.000 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -13.395 -1.245 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.245 5.245 11 C -0.046 4.046 12 C -0.035 4.035 13 C -0.186 4.186 14 C 0.134 3.866 15 F -0.092 7.092 16 N -0.209 5.209 17 C -0.057 4.057 18 C 0.045 3.955 19 F -0.088 7.088 20 C -0.036 4.036 21 C -0.192 4.192 22 C -0.231 4.231 23 C -0.212 4.212 24 H 0.071 0.929 25 H 0.018 0.982 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.171 0.829 30 H 0.193 0.807 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.093 -13.790 -0.566 14.712 hybrid contribution -0.735 1.361 -1.044 1.866 sum 4.358 -12.430 -1.610 13.269 Atomic orbital electron populations 1.69945 1.06029 1.26830 1.50949 1.24944 0.94836 0.99232 0.95378 0.86521 0.79869 0.83164 0.78027 1.20760 1.21261 1.19772 1.21083 0.93434 0.89718 1.50132 0.91921 1.19818 0.90092 0.86866 0.96416 1.62357 1.28295 1.01323 1.32557 1.21059 0.93042 0.89645 1.00832 1.20542 0.96477 0.95037 0.91400 1.21771 0.99219 0.95093 1.02473 1.18048 0.94375 0.87203 0.86940 1.91614 1.88803 1.59097 1.69718 1.66977 1.26499 1.24298 1.03083 1.22554 0.94412 0.89131 0.99587 1.18589 0.98555 0.89333 0.89063 1.91602 1.88988 1.59924 1.68294 1.21751 0.94417 1.01926 0.85535 1.23166 1.02579 0.99438 0.94031 1.23075 1.02824 0.91090 1.06100 1.22811 1.01308 1.00746 0.96370 0.92903 0.98207 0.95057 0.89385 0.92528 0.82855 0.80664 0.92892 0.89130 0.87187 0.89334 0.89482 0.89317 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.50 8.44 -34.44 -0.29 -13.79 16 8 H 0.06 1.68 7.14 -52.48 -0.37 1.30 16 9 C 0.19 4.63 4.56 -4.98 -0.02 4.61 16 10 N -0.52 -10.25 4.62 -237.53 -1.10 -11.34 16 11 C 0.08 1.33 4.77 -4.97 -0.02 1.31 16 12 C -0.03 -0.36 4.86 -104.27 -0.51 -0.87 16 13 C -0.16 -2.08 9.52 -39.37 -0.37 -2.45 16 14 C 0.29 3.84 8.41 -17.37 -0.15 3.70 16 15 F -0.11 -1.48 17.29 2.25 0.04 -1.44 16 16 N -0.49 -6.80 10.37 -13.55 -0.14 -6.95 16 17 C 0.10 1.26 11.17 -17.47 -0.20 1.07 16 18 C 0.07 0.96 7.29 -39.29 -0.29 0.67 16 19 F -0.11 -1.78 16.89 2.25 0.04 -1.74 16 20 C 0.09 1.64 5.34 -3.82 -0.02 1.62 16 21 C -0.17 -2.76 3.96 -90.62 -0.36 -3.12 16 22 C -0.19 -2.47 9.41 -26.70 -0.25 -2.72 16 23 C -0.17 -2.42 10.25 -26.70 -0.27 -2.69 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.00 0.01 6.12 -51.93 -0.32 -0.31 16 26 H 0.03 0.82 7.83 -51.93 -0.41 0.41 16 27 H 0.09 1.47 7.73 -51.93 -0.40 1.07 16 28 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 29 H 0.15 1.69 6.36 -52.49 -0.33 1.36 16 30 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.05 0.86 7.23 -51.93 -0.38 0.49 16 32 H 0.09 1.81 6.73 -51.93 -0.35 1.46 16 33 H 0.11 2.02 6.30 -51.93 -0.33 1.69 16 34 H 0.09 1.04 6.95 -51.93 -0.36 0.68 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -28.51 316.10 -7.92 -36.43 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.39 Total: 0.32 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.85 Total: -11.18 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.50 Total: -43.31 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.51 -7.92 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294940592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.234 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds