Wall clock time and date at job start Tue Mar 31 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86798 * 120.00327 * 2 1 4 4 H 1.48501 * 109.46942 * 270.00406 * 3 2 1 5 5 H 1.48499 * 109.47131 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47508 * 150.00223 * 3 2 1 7 7 C 1.38853 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00257 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00026 * 179.97438 * 7 2 1 10 10 C 1.38539 * 120.00052 * 180.02562 * 9 7 2 11 11 N 1.32933 * 120.51586 * 0.02562 * 10 9 7 12 12 C 1.32475 * 120.54994 * 180.02562 * 11 10 9 13 13 C 1.48412 * 119.13923 * 180.02562 * 12 11 10 14 14 C 1.39732 * 120.90758 * 179.71806 * 13 12 11 15 15 C 1.38051 * 119.02174 * 180.25315 * 14 13 12 16 16 N 1.31877 * 120.88532 * 0.02562 * 15 14 13 17 17 C 1.31883 * 122.00356 * 0.02562 * 16 15 14 18 18 C 1.38051 * 120.88319 * 359.97414 * 17 16 15 19 19 N 1.32546 * 121.72065 * 0.27365 * 12 11 10 20 20 C 1.32515 * 120.96832 * 359.44690 * 19 12 11 21 21 C 1.38121 * 119.13319 * 0.53974 * 20 19 12 22 22 C 1.51084 * 109.92897 * 179.73143 * 21 20 19 23 23 C 1.54420 * 105.13043 * 17.03273 * 22 21 20 24 24 C 1.51216 * 131.12913 * 180.18711 * 20 19 12 25 25 H 0.97002 * 119.99846 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00105 * 0.02562 * 9 7 2 27 27 H 1.07999 * 120.48625 * 0.24453 * 14 13 12 28 28 H 1.08003 * 119.56252 * 179.97438 * 15 14 13 29 29 H 1.08000 * 119.55799 * 179.97438 * 17 16 15 30 30 H 1.08001 * 120.48979 * 180.02562 * 18 17 16 31 31 H 1.08997 * 110.30607 * 135.94450 * 22 21 20 32 32 H 1.08994 * 110.31170 * 258.02081 * 22 21 20 33 33 H 1.09005 * 110.81953 * 92.12618 * 23 22 21 34 34 H 1.09003 * 110.82052 * 215.47111 * 23 22 21 35 35 H 1.09000 * 110.30151 * 44.33695 * 24 20 19 36 36 H 1.08995 * 110.38609 * 282.22975 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5470 1.4401 0.7000 7 6 2.0096 -1.2025 -0.0005 8 1 1.4696 -2.1379 -0.0005 9 7 3.3789 -1.2025 -0.0011 10 6 4.0716 -2.4023 -0.0021 11 7 3.4173 -3.5595 -0.0032 12 6 4.0790 -4.7072 -0.0037 13 6 3.3170 -5.9807 -0.0054 14 6 3.9772 -7.2122 -0.0119 15 6 3.2297 -8.3728 -0.0187 16 7 1.9117 -8.3292 -0.0195 17 6 1.2501 -7.1883 -0.0145 18 6 1.9196 -5.9810 -0.0076 19 7 5.4038 -4.7478 0.0022 20 6 6.1202 -3.6330 -0.0021 21 6 5.4688 -2.4150 -0.0016 22 6 6.4784 -1.2910 -0.0003 23 6 7.8082 -1.9432 -0.4368 24 6 7.6162 -3.4119 -0.0010 25 1 -0.4850 0.8401 0.0004 26 1 3.8639 -0.3625 -0.0007 27 1 5.0563 -7.2553 -0.0118 28 1 3.7310 -9.3294 -0.0241 29 1 0.1702 -7.1986 -0.0159 30 1 1.3715 -5.0504 -0.0032 31 1 6.1849 -0.5182 -0.7107 32 1 6.5729 -0.8685 0.9999 33 1 7.9378 -1.8734 -1.5169 34 1 8.6517 -1.4888 0.0830 35 1 8.0982 -4.0834 -0.7115 36 1 8.0219 -3.5657 0.9989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302329913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:15 Heat of formation + Delta-G solvation = 85.856577 kcal Electronic energy + Delta-G solvation = -21012.178589 eV Core-core repulsion = 17882.002976 eV Total energy + Delta-G solvation = -3130.175613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54125 -39.52145 -36.51102 -35.98942 -32.82615 -32.28598 -31.27257 -30.69401 -28.84699 -27.55198 -24.93900 -24.17922 -23.08242 -21.71007 -20.97683 -20.18198 -18.82497 -17.29292 -16.59613 -15.89020 -15.57009 -15.34421 -15.20926 -14.67630 -14.08988 -13.74861 -13.50867 -13.34408 -13.29649 -13.18326 -12.80926 -12.69871 -12.08993 -11.84118 -11.76839 -11.29901 -11.07561 -11.03480 -10.99692 -10.85573 -10.29335 -9.84052 -9.64767 -9.34446 -9.27002 -8.85028 -8.51212 -8.20078 -7.57107 -6.65496 -3.97323 0.97261 1.46451 2.13656 2.33610 2.86580 2.92085 2.96760 3.82642 4.06486 4.07616 4.29436 4.61814 4.71338 4.73936 4.90222 5.04870 5.12641 5.13691 5.35730 5.47320 5.49733 5.50833 5.75449 5.86556 5.92996 5.97191 6.00996 6.05028 6.13658 6.24878 6.31080 6.39604 6.56029 6.78228 6.97561 6.99208 7.30695 7.80922 7.98962 8.20857 8.39556 8.85682 9.00110 9.31918 10.44789 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.006386 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.064685 B = 4383.419213 C = 6501.398697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.043 3.957 3 Si 0.876 3.124 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.292 4.292 8 H 0.132 0.868 9 N -0.538 5.538 10 C 0.398 3.602 11 N -0.551 5.551 12 C 0.383 3.617 13 C 0.022 3.978 14 C -0.132 4.132 15 C 0.081 3.919 16 N -0.487 5.487 17 C 0.086 3.914 18 C -0.125 4.125 19 N -0.588 5.588 20 C 0.185 3.815 21 C -0.307 4.307 22 C -0.057 4.057 23 C -0.115 4.115 24 C -0.063 4.063 25 H 0.280 0.720 26 H 0.388 0.612 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 -5.164 -0.140 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.702 3.298 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.423 4.423 8 H 0.150 0.850 9 N -0.147 5.147 10 C 0.150 3.850 11 N -0.278 5.278 12 C 0.114 3.886 13 C 0.012 3.988 14 C -0.153 4.153 15 C -0.076 4.076 16 N -0.196 5.196 17 C -0.071 4.071 18 C -0.147 4.147 19 N -0.313 5.313 20 C 0.045 3.955 21 C -0.321 4.321 22 C -0.096 4.096 23 C -0.153 4.153 24 C -0.101 4.101 25 H 0.090 0.910 26 H 0.224 0.776 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.544 -6.419 -0.139 11.503 hybrid contribution 1.280 3.018 0.044 3.278 sum 10.824 -3.401 -0.095 11.346 Atomic orbital electron populations 1.69655 1.05610 1.28295 1.45861 1.25109 0.95670 0.98355 0.97225 0.86678 0.80012 0.83723 0.79434 1.19084 1.19474 1.19217 1.19727 0.78866 0.97261 1.46444 0.85043 1.41168 1.06985 1.03177 1.63365 1.17529 0.85843 0.86453 0.95159 1.67805 1.39373 0.96608 1.23988 1.20380 0.86018 0.90124 0.92050 1.18486 0.92486 0.90333 0.97470 1.22268 1.02244 0.91823 0.98980 1.22614 0.89592 0.97982 0.97416 1.67531 1.09980 1.30475 1.11656 1.22682 1.00397 0.87246 0.96759 1.22464 0.94024 1.00757 0.97421 1.67335 1.06511 1.31309 1.26186 1.21306 0.95757 0.87773 0.90647 1.20963 0.93235 0.98075 1.19867 1.20568 0.92462 0.95722 1.00842 1.22274 0.97231 0.94522 1.01283 1.20849 0.89998 0.96924 1.02349 0.90979 0.77611 0.83734 0.82885 0.82595 0.83071 0.92033 0.91470 0.91077 0.90617 0.90280 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.15 13.96 55.49 0.77 -22.38 16 2 C 0.04 1.09 5.50 -17.45 -0.10 1.00 16 3 Si 0.88 18.24 27.73 -169.99 -4.71 13.52 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 7 C -0.29 -7.58 10.20 -15.05 -0.15 -7.74 16 8 H 0.13 3.76 7.34 -52.48 -0.39 3.37 16 9 N -0.54 -12.38 5.22 -10.99 -0.06 -12.44 16 10 C 0.40 8.98 7.46 -154.79 -1.16 7.83 16 11 N -0.55 -12.75 8.36 -10.36 -0.09 -12.83 16 12 C 0.38 8.06 7.57 -157.04 -1.19 6.87 16 13 C 0.02 0.41 5.91 -104.59 -0.62 -0.21 16 14 C -0.13 -2.04 9.64 -39.09 -0.38 -2.42 16 15 C 0.08 1.13 11.17 -17.60 -0.20 0.93 16 16 N -0.49 -7.54 10.34 -13.32 -0.14 -7.68 16 17 C 0.09 1.31 11.17 -17.60 -0.20 1.11 16 18 C -0.13 -2.18 9.64 -39.09 -0.38 -2.56 16 19 N -0.59 -11.67 9.55 -7.31 -0.07 -11.74 16 20 C 0.19 3.39 7.36 -82.09 -0.60 2.79 16 21 C -0.31 -5.92 6.15 -103.92 -0.64 -6.56 16 22 C -0.06 -0.86 6.39 -26.95 -0.17 -1.03 16 23 C -0.12 -1.35 7.09 -25.25 -0.18 -1.53 16 24 C -0.06 -0.84 6.77 -26.90 -0.18 -1.02 16 25 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.39 8.13 5.44 -40.82 -0.22 7.91 16 27 H 0.14 2.09 7.61 -52.49 -0.40 1.69 16 28 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.15 2.82 7.61 -52.49 -0.40 2.42 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -29.30 309.21 -9.72 -39.02 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.96 Total: 12.39 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -6.14 Total: -2.52 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.42 Total: -67.07 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.71 Total: 13.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.30 -9.72 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302329913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.880 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds