Wall clock time and date at job start Tue Mar 31 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38196 * 119.60899 * 2 1 4 4 C 1.38663 * 119.19165 * 180.20662 * 3 2 1 5 5 C 1.50703 * 120.78185 * 179.79489 * 4 3 2 6 6 N 1.46899 * 109.46983 * 275.48445 * 5 4 3 7 7 C 1.46905 * 110.99713 * 164.01426 * 6 5 4 8 8 C 1.50705 * 109.47075 * 197.98419 * 7 6 5 9 9 H 1.08003 * 119.99644 * 5.41420 * 8 7 6 10 10 C 1.37871 * 119.99986 * 185.41092 * 8 7 6 11 11 N 1.31510 * 119.99906 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00161 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47067 * 89.99971 * 12 10 8 14 14 H 1.48498 * 109.47758 * 210.00079 * 12 10 8 15 15 H 1.48506 * 109.47482 * 330.00386 * 12 10 8 16 16 C 1.46906 * 111.00243 * 287.97089 * 6 5 4 17 17 C 1.53000 * 109.46910 * 169.08439 * 16 6 5 18 18 C 1.52999 * 109.46911 * 289.08593 * 16 6 5 19 19 C 1.38614 * 118.43748 * 359.52289 * 4 3 2 20 20 C 1.38351 * 119.15164 * 0.24540 * 19 4 3 21 21 Cl 1.73598 * 119.63552 * 180.02562 * 20 19 4 22 22 N 1.31874 * 119.61165 * 179.71677 * 2 1 3 23 23 H 1.09006 * 109.47277 * 270.27828 * 1 2 3 24 24 H 1.09000 * 109.47246 * 30.28077 * 1 2 3 25 25 H 1.09004 * 109.47286 * 150.28242 * 1 2 3 26 26 H 1.07995 * 120.40379 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47162 * 155.48944 * 5 4 3 28 28 H 1.08995 * 109.47068 * 35.48306 * 5 4 3 29 29 H 1.08996 * 109.47478 * 317.99128 * 7 6 5 30 30 H 1.09001 * 109.46805 * 77.98877 * 7 6 5 31 31 H 0.97002 * 120.00312 * 179.97438 * 11 10 8 32 32 H 1.08994 * 109.46738 * 49.08224 * 16 6 5 33 33 H 1.09001 * 109.46792 * 70.71063 * 17 16 6 34 34 H 1.08996 * 109.46893 * 190.70911 * 17 16 6 35 35 H 1.09004 * 109.47346 * 310.71121 * 17 16 6 36 36 H 1.09002 * 109.47047 * 52.27015 * 18 16 6 37 37 H 1.08996 * 109.47179 * 172.27570 * 18 16 6 38 38 H 1.09005 * 109.46983 * 292.27448 * 18 16 6 39 39 H 1.07998 * 120.42586 * 180.27541 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1897 1.2015 0.0000 4 6 3.5763 1.1914 -0.0044 5 6 4.3570 2.4805 -0.0092 6 7 4.4930 2.9654 -1.3891 7 6 4.9015 4.3763 -1.4134 8 6 4.6096 4.9604 -2.7716 9 1 4.0862 4.3725 -3.5111 10 6 5.0107 6.2453 -3.0701 11 7 4.7556 6.7552 -4.2552 12 14 5.9165 7.2619 -1.7913 13 1 7.3784 7.0396 -1.9271 14 1 5.6134 8.7009 -1.9973 15 1 5.4778 6.8533 -0.4326 16 6 5.4335 2.1318 -2.1498 17 6 5.3464 2.4898 -3.6348 18 6 6.8571 2.3810 -1.6477 19 6 4.2275 -0.0322 0.0016 20 6 3.4775 -1.1948 0.0064 21 17 4.2801 -2.7341 0.0145 22 7 2.1586 -1.1465 0.0057 23 1 -0.3634 0.0050 1.0277 24 1 -0.3634 0.8874 -0.5182 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6500 2.1369 -0.0004 27 1 5.3464 2.3077 0.4144 28 1 3.8313 3.2258 0.5877 29 1 4.3477 4.9281 -0.6539 30 1 5.9697 4.4488 -1.2086 31 1 5.0374 7.6594 -4.4651 32 1 5.1792 1.0807 -2.0139 33 1 5.7796 3.4769 -3.7965 34 1 5.8956 1.7518 -4.2193 35 1 4.3019 2.4960 -3.9464 36 1 6.8872 2.2584 -0.5650 37 1 7.5368 1.6673 -2.1132 38 1 7.1616 3.3950 -1.9071 39 1 5.3066 -0.0775 0.0029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000321036408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:24 Heat of formation + Delta-G solvation = 32.110488 kcal Electronic energy + Delta-G solvation = -20292.847117 eV Core-core repulsion = 17261.448392 eV Total energy + Delta-G solvation = -3031.398724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43506 -38.04101 -36.68317 -33.77068 -32.49870 -32.40970 -30.72124 -28.29302 -27.68923 -26.50140 -25.07392 -23.10141 -21.95409 -21.04529 -18.75549 -17.00526 -16.88540 -16.20651 -15.74739 -15.45741 -14.83108 -14.51830 -14.19433 -13.75501 -13.35127 -13.23262 -12.99764 -12.56094 -12.44085 -12.24876 -12.07820 -11.63615 -11.50611 -11.43884 -11.33367 -11.27311 -11.03629 -10.74777 -10.64544 -10.35142 -10.04920 -9.90423 -9.57579 -9.49455 -9.06697 -8.79202 -8.55850 -7.47751 -6.07506 -4.01906 0.96517 1.17884 1.78286 3.22831 3.31888 3.32749 3.59370 4.28843 4.37852 4.58035 4.75310 4.94177 5.06477 5.22360 5.22934 5.35778 5.43538 5.50846 5.57220 5.66721 5.70036 5.81552 5.90466 5.94812 5.96526 6.19062 6.33614 6.43284 6.50548 6.55527 6.57174 6.80151 6.85272 7.05423 7.44022 7.59403 7.74299 7.80979 7.96623 8.61916 9.04031 9.53348 11.04593 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.004614 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.299039 B = 6067.583978 C = 6598.538632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.142 3.858 3 C -0.145 4.145 4 C -0.001 4.001 5 C 0.080 3.920 6 N -0.514 5.514 7 C 0.156 3.844 8 C -0.504 4.504 9 H 0.093 0.907 10 C 0.068 3.932 11 N -0.899 5.899 12 Si 0.868 3.132 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.269 1.269 16 C 0.087 3.913 17 C -0.139 4.139 18 C -0.185 4.185 19 C -0.157 4.157 20 C 0.178 3.822 21 Cl -0.043 7.043 22 N -0.488 5.488 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.145 0.855 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.023 0.977 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -13.025 9.933 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.004 3.996 3 C -0.165 4.165 4 C -0.009 4.009 5 C -0.048 4.048 6 N -0.238 5.238 7 C 0.030 3.970 8 C -0.542 4.542 9 H 0.111 0.889 10 C -0.133 4.133 11 N -0.538 5.538 12 Si 0.696 3.304 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.194 1.194 16 C -0.021 4.021 17 C -0.196 4.196 18 C -0.244 4.244 19 C -0.179 4.179 20 C 0.014 3.986 21 Cl -0.014 7.014 22 N -0.201 5.201 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.162 0.838 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.013 -13.779 9.594 17.058 hybrid contribution 1.954 1.272 1.010 2.541 sum -1.059 -12.507 10.604 16.431 Atomic orbital electron populations 1.20728 0.88236 1.03875 1.03114 1.21134 0.96847 0.87058 0.94513 1.21975 0.94301 0.99482 1.00775 1.20348 0.93962 0.94796 0.91836 1.21162 0.97664 0.92493 0.93458 1.62294 1.48718 1.04488 1.08262 1.20344 0.94052 0.83503 0.99086 1.21215 1.36653 0.98651 0.97695 0.88947 1.24874 0.96030 0.97435 0.94993 1.69875 1.47410 1.16064 1.20463 0.86979 0.80527 0.80124 0.82805 1.20424 1.21256 1.19402 1.21543 0.89065 0.95849 0.95690 1.22126 1.01996 1.02877 0.92635 1.22481 0.98962 1.02988 0.99966 1.21715 1.01399 0.90872 1.03901 1.21442 0.89854 0.86941 1.00378 1.98386 1.76948 1.29482 1.96625 1.66738 1.08181 1.30569 1.14568 0.90343 0.90069 0.90431 0.83768 0.93729 0.89599 0.95878 0.98405 0.92696 0.92145 0.88628 0.95302 0.92416 0.93711 0.92992 0.91123 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.00 0.37 -0.62 16 2 C 0.14 1.87 6.78 -82.59 -0.56 1.31 16 3 C -0.14 -1.96 9.47 -39.44 -0.37 -2.33 16 4 C 0.00 -0.01 4.95 -104.32 -0.52 -0.53 16 5 C 0.08 1.24 5.06 -4.97 -0.03 1.21 16 6 N -0.51 -9.75 4.42 -229.51 -1.02 -10.76 16 7 C 0.16 3.44 3.56 -4.97 -0.02 3.43 16 8 C -0.50 -13.15 7.16 -34.44 -0.25 -13.40 16 9 H 0.09 2.63 5.92 -52.48 -0.31 2.32 16 10 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 11 N -0.90 -26.31 13.96 55.43 0.77 -25.53 16 12 Si 0.87 20.48 27.36 -169.99 -4.65 15.83 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.09 6.70 56.52 0.38 -5.71 16 16 C 0.09 1.56 2.81 -67.71 -0.19 1.36 16 17 C -0.14 -2.75 7.72 37.16 0.29 -2.46 16 18 C -0.19 -3.04 8.33 37.16 0.31 -2.73 16 19 C -0.16 -2.15 8.19 -39.40 -0.32 -2.48 16 20 C 0.18 2.52 7.27 -17.44 -0.13 2.39 16 21 Cl -0.04 -0.54 29.11 -51.86 -1.51 -2.05 16 22 N -0.49 -7.14 10.25 -6.62 -0.07 -7.21 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.04 0.65 6.12 -51.93 -0.32 0.33 16 28 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 29 H 0.02 0.52 7.11 -51.93 -0.37 0.15 16 30 H 0.00 -0.04 4.74 -51.93 -0.25 -0.28 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.06 1.02 6.15 -51.93 -0.32 0.70 16 33 H 0.10 2.19 5.73 -51.93 -0.30 1.89 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 1.22 7.37 -51.93 -0.38 0.84 16 36 H 0.04 0.66 6.30 -51.93 -0.33 0.34 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.31 6.42 -51.93 -0.33 0.98 16 39 H 0.14 1.72 8.04 -52.49 -0.42 1.29 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -28.72 321.58 -8.56 -37.28 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.42 Total: 0.71 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.51 Total: -13.10 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.31 Total: -43.51 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.65 Total: 15.83 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.72 -8.56 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321036408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.388 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds