Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 N 1.46494 * 109.47046 * 119.99893 * 2 1 3 5 5 C 1.36529 * 119.80810 * 300.02464 * 4 2 1 6 6 C 1.35007 * 119.30106 * 179.97438 * 5 4 2 7 7 C 1.41860 * 118.94009 * 359.97438 * 6 5 4 8 8 O 1.22162 * 120.21620 * 180.02562 * 7 6 5 9 9 N 1.33986 * 119.56680 * 359.75296 * 7 6 5 10 10 C 1.31835 * 120.67581 * 0.51225 * 9 7 6 11 11 S 1.76200 * 119.43885 * 179.76419 * 10 9 7 12 12 C 1.81000 * 99.99702 * 359.71926 * 11 10 9 13 13 H 1.08992 * 109.47518 * 305.00164 * 12 11 10 14 14 C 1.52999 * 109.47112 * 65.00481 * 12 11 10 15 15 C 1.53006 * 109.47058 * 185.00054 * 12 11 10 16 16 C 1.50699 * 109.46866 * 65.00223 * 15 12 11 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 12 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47325 * 59.99531 * 20 18 16 22 22 H 1.48496 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47183 * 299.99726 * 20 18 16 24 24 H 1.09004 * 109.46875 * 300.00234 * 1 2 3 25 25 H 1.08996 * 109.47028 * 59.99754 * 1 2 3 26 26 H 1.08994 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47148 * 240.00172 * 2 1 3 28 28 H 1.08993 * 109.46921 * 300.00164 * 3 2 1 29 29 H 1.09003 * 109.46943 * 60.00066 * 3 2 1 30 30 H 1.08999 * 109.46825 * 179.97438 * 3 2 1 31 31 H 1.08006 * 120.34698 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.53057 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.47170 * 59.99793 * 14 12 11 34 34 H 1.09001 * 109.47273 * 179.97438 * 14 12 11 35 35 H 1.09002 * 109.46911 * 299.99645 * 14 12 11 36 36 H 1.08993 * 109.46955 * 185.00442 * 15 12 11 37 37 H 1.09000 * 109.47050 * 305.00271 * 15 12 11 38 38 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6857 -0.2210 2.4342 6 6 2.1409 -0.8656 3.5296 7 6 2.9537 -2.0160 3.3609 8 8 3.3778 -2.6175 4.3360 9 7 3.2485 -2.4418 2.1252 10 6 2.7995 -1.7969 1.0666 11 16 3.2124 -2.3818 -0.5433 12 6 4.2260 -3.8162 -0.1061 13 1 5.0349 -3.5022 0.5534 14 6 3.3590 -4.8545 0.6088 15 6 4.8144 -4.4315 -1.3775 16 6 5.7646 -3.4517 -2.0164 17 1 5.9318 -2.4866 -1.5614 18 6 6.4198 -3.7870 -3.1823 19 7 6.2159 -4.9621 -3.7366 20 14 7.5982 -2.5729 -3.9738 21 1 8.6951 -2.2567 -3.0241 22 1 8.1692 -3.1699 -5.2078 23 1 6.8675 -1.3268 -4.3186 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.0649 0.6569 2.5362 32 1 1.8903 -0.5112 4.5186 33 1 2.5500 -5.1687 -0.0509 34 1 3.9693 -5.7186 0.8717 35 1 2.9398 -4.4162 1.5145 36 1 5.3511 -5.3456 -1.1239 37 1 4.0095 -4.6643 -2.0746 38 1 6.6770 -5.1981 -4.5566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331345337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -1.996704 kcal Electronic energy + Delta-G solvation = -20167.669911 eV Core-core repulsion = 17136.835895 eV Total energy + Delta-G solvation = -3030.834017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.26469 -38.06329 -35.35462 -34.53467 -32.76707 -31.96374 -30.88364 -27.70691 -27.49394 -24.82612 -24.18074 -23.33185 -21.73876 -20.58422 -18.21126 -17.93966 -16.93126 -16.42327 -15.83790 -15.42151 -14.82523 -14.63159 -14.57857 -14.22252 -14.02646 -13.39242 -12.94032 -12.86476 -12.74581 -12.49848 -12.37570 -11.85728 -11.70914 -11.62423 -11.56656 -11.27458 -10.98088 -10.76045 -10.73217 -10.62775 -10.34407 -9.60003 -9.53828 -9.26963 -8.74783 -8.45557 -8.36740 -7.63589 -6.10438 -4.13695 1.15884 1.26057 1.30773 2.35139 2.72474 3.28360 3.33498 3.35936 4.05525 4.20916 4.31251 4.38431 4.52203 4.56929 4.79886 5.05275 5.09270 5.21278 5.26735 5.29800 5.47502 5.50574 5.64685 5.72960 5.76254 5.77568 5.91163 6.19703 6.37949 6.48027 6.62021 6.63762 6.89404 7.46641 7.49758 7.85838 7.94823 8.21926 8.46807 8.90850 9.50991 11.00343 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.005489 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.628489 B = 5100.296306 C = 5899.130357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 C -0.164 4.164 4 N -0.492 5.492 5 C 0.140 3.860 6 C -0.294 4.294 7 C 0.510 3.490 8 O -0.529 6.529 9 N -0.581 5.581 10 C 0.381 3.619 11 S 0.017 5.983 12 C -0.053 4.053 13 H 0.098 0.902 14 C -0.149 4.149 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.062 0.938 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.027 0.973 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 13.150 4.801 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.004 3.996 3 C -0.222 4.222 4 N -0.192 5.192 5 C 0.013 3.987 6 C -0.325 4.325 7 C 0.299 3.701 8 O -0.409 6.409 9 N -0.328 5.328 10 C 0.009 3.991 11 S 0.252 5.748 12 C -0.181 4.181 13 H 0.116 0.884 14 C -0.208 4.208 15 C -0.003 4.003 16 C -0.565 4.565 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.183 0.817 32 H 0.166 0.834 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.273 12.496 4.134 18.693 hybrid contribution 0.532 0.958 0.900 1.418 sum -12.742 13.454 5.034 19.201 Atomic orbital electron populations 1.22212 0.92774 1.03686 1.03437 1.21914 0.95975 0.94665 0.87065 1.22215 1.02883 0.93724 1.03384 1.44823 1.42813 1.24238 1.07322 1.21993 0.95842 0.97648 0.83238 1.23095 1.07689 1.02412 0.99336 1.17817 0.80947 0.84389 0.86970 1.90826 1.53095 1.58432 1.38580 1.70022 1.31159 1.32221 0.99402 1.26244 0.85994 0.83934 1.02967 1.86108 1.59589 1.35486 0.93658 1.23796 0.98090 0.92680 1.03570 0.88401 1.22131 0.99398 0.98470 1.00773 1.19145 0.95894 0.96612 0.88678 1.21210 1.25399 1.01501 1.08395 0.91970 1.24981 0.96730 0.95263 0.97028 1.69940 1.42753 1.20407 1.19909 0.86649 0.81371 0.81305 0.78713 1.20124 1.21261 1.20089 0.91816 0.89871 0.91262 0.86324 0.89867 0.91839 0.91114 0.81690 0.83393 0.93008 0.91880 0.90934 0.93924 0.95487 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.16 37.16 0.34 -0.66 16 2 C 0.11 0.91 3.16 -67.93 -0.21 0.70 16 3 C -0.16 -1.10 9.16 37.16 0.34 -0.75 16 4 N -0.49 -5.80 2.58 -109.86 -0.28 -6.08 16 5 C 0.14 1.45 9.12 -16.61 -0.15 1.30 16 6 C -0.29 -4.07 10.03 -39.35 -0.39 -4.46 16 7 C 0.51 9.88 7.72 -15.23 -0.12 9.76 16 8 O -0.53 -12.30 17.97 4.77 0.09 -12.22 16 9 N -0.58 -11.19 6.92 -14.70 -0.10 -11.29 16 10 C 0.38 6.11 7.59 -88.33 -0.67 5.44 16 11 S 0.02 0.28 18.50 -107.50 -1.99 -1.70 16 12 C -0.05 -1.08 2.14 -26.73 -0.06 -1.14 16 13 H 0.10 2.16 7.96 -51.92 -0.41 1.74 16 14 C -0.15 -2.77 8.96 37.16 0.33 -2.44 16 15 C 0.04 0.86 4.44 -27.88 -0.12 0.74 16 16 C -0.53 -13.88 8.53 -34.44 -0.29 -14.17 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 20 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.06 0.31 7.26 -51.93 -0.38 -0.07 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.12 1.18 5.74 -46.83 -0.27 0.91 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.33 7.26 -51.93 -0.38 -0.05 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.17 0.94 6.91 -52.48 -0.36 0.58 16 32 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.39 5.64 -51.93 -0.29 1.10 16 36 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -33.49 325.48 -8.21 -41.69 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.43 Total: -2.21 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.11 Total: -4.10 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.35 Total: -42.12 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.99 Total: -1.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.49 -8.21 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331345337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.697 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds