Wall clock time and date at job start Tue Mar 31 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38884 * 120.75414 * 2 1 4 4 C 1.38009 * 119.33947 * 179.79984 * 3 2 1 5 5 N 1.31986 * 120.88044 * 0.48503 * 4 3 2 6 6 C 1.32371 * 121.63217 * 359.74590 * 5 4 3 7 7 N 1.39060 * 119.70791 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00537 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.47449 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47014 * 300.00435 * 9 8 7 11 11 C 1.52998 * 109.46801 * 60.00211 * 9 8 7 12 12 C 1.52998 * 109.46903 * 180.02562 * 9 8 7 13 13 C 1.50695 * 109.46796 * 180.02562 * 12 9 8 14 14 H 1.08004 * 120.00249 * 359.97438 * 13 12 9 15 15 C 1.37881 * 120.00052 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00125 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 119.99856 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47439 * 90.00127 * 17 15 13 19 19 H 1.48502 * 109.47193 * 210.00048 * 17 15 13 20 20 H 1.48500 * 109.47178 * 329.99836 * 17 15 13 21 21 C 1.38380 * 120.75348 * 180.27983 * 2 1 3 22 22 Cl 1.73607 * 120.45846 * 359.95904 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.71845 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.71945 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.71926 * 1 2 3 26 26 H 1.08005 * 120.33119 * 359.97438 * 3 2 1 27 27 H 1.08001 * 119.55933 * 180.23165 * 4 3 2 28 28 H 0.97001 * 119.99670 * 180.02562 * 7 6 5 29 29 H 1.08995 * 109.46879 * 300.00502 * 8 7 6 30 30 H 1.09002 * 109.46870 * 59.99654 * 8 7 6 31 31 H 1.09000 * 109.47806 * 59.99727 * 10 9 8 32 32 H 1.09000 * 109.47259 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.46766 * 299.99397 * 10 9 8 34 34 H 1.09003 * 109.47343 * 59.99848 * 11 9 8 35 35 H 1.09000 * 109.47287 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46901 * 299.99588 * 11 9 8 37 37 H 1.09003 * 109.46992 * 299.99999 * 12 9 8 38 38 H 1.08995 * 109.47177 * 60.00129 * 12 9 8 39 39 H 0.96999 * 120.00306 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1935 0.0000 4 6 3.5969 1.1595 0.0042 5 7 4.2462 0.0104 -0.0014 6 6 3.6064 -1.1485 -0.0062 7 7 4.3307 -2.3355 -0.0125 8 6 5.7953 -2.3001 -0.0133 9 6 6.3401 -3.7298 -0.0201 10 6 5.8485 -4.4688 1.2261 11 6 5.8470 -4.4575 -1.2723 12 6 7.8697 -3.6927 -0.0203 13 6 8.4063 -5.1008 -0.0276 14 1 7.7246 -5.9385 -0.0313 15 6 9.7676 -5.3199 -0.0296 16 7 10.2359 -6.5488 -0.0355 17 14 10.9466 -3.8711 -0.0239 18 1 11.2602 -3.4934 1.3777 19 1 12.1990 -4.2494 -0.7266 20 1 10.3182 -2.7187 -0.7183 21 6 2.2146 -1.1892 -0.0058 22 17 1.3786 -2.7107 -0.0122 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5182 25 1 -0.3633 0.8925 -0.5095 26 1 1.6950 2.1389 -0.0004 27 1 4.1527 2.0855 0.0080 28 1 3.8662 -3.1871 -0.0164 29 1 6.1455 -1.7732 -0.9009 30 1 6.1467 -1.7820 0.8790 31 1 4.7588 -4.4953 1.2267 32 1 6.2370 -5.4872 1.2215 33 1 6.1999 -3.9504 2.1182 34 1 6.1972 -3.9310 -2.1602 35 1 6.2347 -5.4762 -1.2770 36 1 4.7573 -4.4839 -1.2717 37 1 8.2202 -3.1660 -0.9079 38 1 8.2206 -3.1744 0.8720 39 1 11.1935 -6.7029 -0.0372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340902259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:35 Heat of formation + Delta-G solvation = 10.324328 kcal Electronic energy + Delta-G solvation = -19870.623511 eV Core-core repulsion = 16838.280068 eV Total energy + Delta-G solvation = -3032.343443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39430 -37.81829 -36.65495 -34.85931 -33.39824 -32.23036 -29.72525 -28.09893 -27.64993 -26.52835 -25.76493 -23.32826 -22.61905 -21.05711 -18.47078 -17.24689 -16.84873 -16.64583 -16.38600 -15.09924 -14.75650 -14.48513 -14.12160 -13.85474 -13.48138 -13.27912 -13.14726 -12.77982 -12.70594 -12.44738 -12.26620 -12.05546 -11.92488 -11.29854 -11.20930 -11.13057 -10.98818 -10.61681 -10.45419 -10.17674 -9.84082 -9.72801 -9.62099 -9.40679 -9.37451 -8.97678 -8.52479 -7.62223 -6.03014 -4.00165 1.00920 1.30904 2.06916 3.28592 3.32081 3.39991 3.43852 3.72990 4.40247 4.46546 4.56344 4.88183 4.92831 5.24416 5.29642 5.30728 5.34426 5.43366 5.56426 5.63490 5.70232 5.77284 6.06672 6.15494 6.17027 6.17843 6.36033 6.38696 6.60399 6.62167 6.89085 7.03483 7.06592 7.21112 7.23423 7.38381 7.39529 7.80015 8.18828 8.54554 9.01330 9.59586 11.09812 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.003993 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.320897 B = 7009.736743 C = 7756.394880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.010 3.990 3 C -0.242 4.242 4 C 0.160 3.840 5 N -0.532 5.532 6 C 0.426 3.574 7 N -0.705 5.705 8 C 0.137 3.863 9 C -0.064 4.064 10 C -0.129 4.129 11 C -0.129 4.129 12 C 0.000 4.000 13 C -0.511 4.511 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.169 4.169 22 Cl -0.065 7.065 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.159 0.841 28 H 0.410 0.590 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.116 14.098 0.070 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 C -0.265 4.265 4 C 0.001 3.999 5 N -0.251 5.251 6 C 0.187 3.813 7 N -0.336 5.336 8 C 0.014 3.986 9 C -0.065 4.065 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.038 4.038 13 C -0.549 4.549 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.204 4.204 22 Cl -0.037 7.037 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.153 0.847 27 H 0.176 0.824 28 H 0.250 0.750 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.879 13.800 0.063 22.585 hybrid contribution -0.315 0.290 0.035 0.430 sum -18.194 14.090 0.098 23.012 Atomic orbital electron populations 1.20879 0.89907 1.03643 1.03191 1.19906 0.96687 0.90906 0.92367 1.21616 0.95148 0.97715 1.12029 1.22513 0.91635 0.95120 0.90584 1.67467 1.39238 0.96836 1.21603 1.18186 0.85949 0.87821 0.89359 1.45090 1.07278 1.04234 1.77020 1.21614 0.77165 0.98244 1.01625 1.20713 0.98496 0.91572 0.95708 1.21776 0.97738 1.02257 0.96857 1.21770 0.97727 1.02287 0.96813 1.19571 0.89335 0.98405 0.96480 1.21090 0.92171 0.91261 1.50333 0.90422 1.25001 0.98361 0.95344 0.94753 1.69903 1.13446 1.19600 1.51395 0.86850 0.80677 0.83711 0.78479 1.20385 1.21527 1.18975 1.21091 0.91337 0.87861 1.20092 1.98329 1.77808 1.30136 1.97429 0.90178 0.90584 0.90728 0.84738 0.82400 0.75005 0.91892 0.91905 0.95112 0.90869 0.93389 0.93377 0.90872 0.95115 0.96364 0.96812 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.69 36.01 0.35 -0.58 16 2 C 0.01 0.10 5.92 -104.33 -0.62 -0.51 16 3 C -0.24 -2.35 9.81 -39.43 -0.39 -2.74 16 4 C 0.16 1.79 11.17 -17.57 -0.20 1.59 16 5 N -0.53 -7.80 9.57 -12.40 -0.12 -7.92 16 6 C 0.43 6.30 7.48 -154.95 -1.16 5.14 16 7 N -0.70 -10.79 5.07 -60.38 -0.31 -11.10 16 8 C 0.14 2.33 4.58 -4.04 -0.02 2.31 16 9 C -0.06 -1.22 0.54 -154.51 -0.08 -1.30 16 10 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 11 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 12 C 0.00 0.00 3.11 -27.89 -0.09 -0.09 16 13 C -0.51 -13.80 8.20 -34.44 -0.28 -14.08 16 14 H 0.08 2.23 5.92 -52.48 -0.31 1.92 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 17 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 21 C -0.17 -2.18 6.36 -39.16 -0.25 -2.43 16 22 Cl -0.07 -0.77 26.10 -51.86 -1.35 -2.13 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.60 7.02 -51.93 -0.36 0.24 16 25 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 27 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.41 6.02 4.82 -40.82 -0.20 5.83 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 32 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 36 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 37 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 38 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -30.01 324.06 -8.61 -38.61 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.59 Total: 2.40 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.23 Total: -15.00 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.35 Total: -45.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.35 Total: -2.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.01 -8.61 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340902259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.938 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds