Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46952 * 2 1 4 4 C 1.46903 * 110.99776 * 59.19646 * 3 2 1 5 5 C 1.53003 * 109.46728 * 66.05075 * 4 3 2 6 6 C 1.50705 * 109.46819 * 180.02562 * 5 4 3 7 7 C 1.33384 * 125.20669 * 89.99776 * 6 5 4 8 8 C 1.38422 * 114.92263 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92166 * 0.02562 * 8 7 6 10 10 S 1.75887 * 125.19803 * 269.69038 * 6 5 4 11 11 C 1.46902 * 111.00142 * 295.24666 * 3 2 1 12 12 C 1.50695 * 109.47062 * 288.23431 * 11 3 2 13 13 O 1.21297 * 120.00254 * 354.30355 * 12 11 3 14 14 N 1.34783 * 120.00191 * 174.29547 * 12 11 3 15 15 C 1.37097 * 120.00343 * 180.02562 * 14 12 11 16 16 H 1.07997 * 119.99772 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00114 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47109 * 89.99999 * 19 17 15 21 21 H 1.48504 * 109.47026 * 209.99552 * 19 17 15 22 22 H 1.48499 * 109.47263 * 329.99762 * 19 17 15 23 23 H 1.08995 * 109.46753 * 300.00160 * 1 2 3 24 24 H 1.08991 * 109.47482 * 60.00721 * 1 2 3 25 25 H 1.09008 * 109.46528 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47030 * 240.00659 * 2 1 3 27 27 H 1.08998 * 109.47568 * 120.00174 * 2 1 3 28 28 H 1.08997 * 109.47459 * 306.05134 * 4 3 2 29 29 H 1.08999 * 109.46860 * 186.04370 * 4 3 2 30 30 H 1.08997 * 109.47102 * 59.99841 * 5 4 3 31 31 H 1.08999 * 109.46874 * 299.99286 * 5 4 3 32 32 H 1.08001 * 122.53832 * 359.95781 * 7 6 5 33 33 H 1.07997 * 122.54271 * 180.02562 * 8 7 6 34 34 H 1.08000 * 125.20918 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47253 * 48.23600 * 11 3 2 36 36 H 1.09003 * 109.47517 * 168.23536 * 11 3 2 37 37 H 0.97005 * 119.99860 * 0.02562 * 14 12 11 38 38 H 0.97002 * 119.99920 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5329 2.1154 1.1780 5 6 2.1481 1.5119 2.4422 6 6 1.6483 2.2608 3.6508 7 6 0.5530 1.9535 4.3472 8 6 0.2921 2.7862 5.4217 9 6 1.1754 3.7702 5.5975 10 16 2.4244 3.6692 4.3633 11 6 1.6436 2.0764 -1.2404 12 6 2.4634 1.5373 -2.3842 13 8 3.3510 0.7387 -2.1708 14 7 2.2102 1.9424 -3.6446 15 6 2.9556 1.4516 -4.6852 16 1 3.7455 0.7400 -4.4952 17 6 2.6949 1.8697 -5.9844 18 7 1.7335 2.7352 -6.2157 19 14 3.7101 1.2004 -7.4024 20 1 3.0683 -0.0289 -7.9338 21 1 3.7913 2.2210 -8.4781 22 1 5.0777 0.8769 -6.9226 23 1 -0.3632 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 0.4469 2.0386 1.2301 29 1 1.8197 3.1640 1.0994 30 1 3.2341 1.5887 2.3902 31 1 1.8612 0.4633 2.5209 32 1 -0.0824 1.1183 4.0919 33 1 -0.5618 2.6497 6.0686 34 1 1.1330 4.5123 6.3811 35 1 0.5853 1.9108 -1.4422 36 1 1.8300 3.1448 -1.1318 37 1 1.5005 2.5813 -3.8153 38 1 1.5517 3.0273 -7.1227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343077567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = 0.424678 kcal Electronic energy + Delta-G solvation = -19448.562769 eV Core-core repulsion = 16417.833751 eV Total energy + Delta-G solvation = -3030.729018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00421 -38.04281 -36.87216 -33.85099 -32.70413 -31.20347 -30.10128 -28.35290 -26.20349 -24.38129 -24.22556 -22.74054 -20.23663 -19.33135 -18.89359 -17.77624 -17.21070 -16.03617 -15.85956 -15.69492 -15.08826 -14.52902 -14.24763 -13.71689 -13.56771 -13.37363 -13.03252 -12.89249 -12.87151 -12.22522 -12.12273 -12.08459 -11.81125 -11.56328 -11.44098 -11.18635 -11.07721 -10.93159 -10.73449 -10.36883 -10.29982 -10.17792 -9.43961 -8.79596 -8.61923 -8.39266 -7.92130 -7.78590 -6.37864 -3.78399 0.85704 1.50386 1.88332 2.59371 3.20095 3.28414 3.34562 3.96312 3.99206 4.26656 4.80014 4.88727 4.99356 5.12908 5.20644 5.28805 5.31164 5.36727 5.43014 5.46636 5.57897 5.67419 5.74498 5.82591 5.92415 5.98205 6.05216 6.12631 6.17773 6.30085 6.35825 6.38267 6.56329 7.31302 7.42347 7.58789 8.10969 8.66977 9.22747 9.59747 10.12252 10.80115 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.003024 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.686364 B = 9257.306482 C = 9504.074502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 N -0.511 5.511 4 C 0.057 3.943 5 C -0.048 4.048 6 C -0.159 4.159 7 C -0.148 4.148 8 C -0.132 4.132 9 C -0.224 4.224 10 S 0.099 5.901 11 C 0.042 3.958 12 C 0.446 3.554 13 O -0.576 6.576 14 N -0.568 5.568 15 C -0.297 4.297 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.904 5.904 19 Si 0.929 3.071 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.161 0.839 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.391 0.609 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 1.364 20.210 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.079 4.079 3 N -0.234 5.234 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.277 4.277 7 C -0.178 4.178 8 C -0.163 4.163 9 C -0.359 4.359 10 S 0.362 5.638 11 C -0.090 4.090 12 C 0.231 3.769 13 O -0.459 6.459 14 N -0.205 5.205 15 C -0.426 4.426 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.194 1.194 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.224 0.776 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.934 1.749 19.871 20.163 hybrid contribution -2.277 -0.528 -0.513 2.394 sum -5.212 1.221 19.358 20.084 Atomic orbital electron populations 1.22467 0.99082 1.02129 1.01700 1.22224 0.91798 0.90164 1.03715 1.61767 1.59219 1.02024 1.00412 1.22151 0.97483 0.98087 0.89458 1.20172 1.01521 0.98408 0.88620 1.24585 0.99932 1.00743 1.02461 1.20130 0.98342 1.02471 0.96843 1.20152 1.00937 0.95818 0.99378 1.25602 1.00335 1.05133 1.04880 1.84435 1.27728 1.27748 1.23852 1.21915 0.97931 0.98863 0.90249 1.19766 0.87386 0.86220 0.83504 1.90511 1.34300 1.37097 1.83983 1.41880 1.32982 1.40728 1.04903 1.19686 1.14446 1.23610 0.84887 0.87973 1.25242 0.97267 0.96770 0.98738 1.69615 1.30750 1.32070 1.22092 0.85876 0.80049 0.78262 0.80210 1.20484 1.20972 1.19424 0.92765 0.92328 0.92256 0.89030 0.91106 0.94167 0.90890 0.89661 0.89783 0.84465 0.84572 0.82172 0.92955 0.89567 0.77578 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 9.26 37.16 0.34 -2.20 16 2 C 0.05 0.76 5.52 -3.82 -0.02 0.74 16 3 N -0.51 -8.41 4.31 -236.07 -1.02 -9.43 16 4 C 0.06 0.74 4.68 -3.82 -0.02 0.72 16 5 C -0.05 -0.55 5.63 -27.88 -0.16 -0.71 16 6 C -0.16 -1.73 5.76 -36.00 -0.21 -1.93 16 7 C -0.15 -1.47 10.05 -41.21 -0.41 -1.88 16 8 C -0.13 -1.19 10.18 -41.21 -0.42 -1.61 16 9 C -0.22 -2.00 11.23 29.04 0.33 -1.68 16 10 S 0.10 1.01 23.33 -107.50 -2.51 -1.50 16 11 C 0.04 0.75 5.34 -4.98 -0.03 0.72 16 12 C 0.45 10.59 7.36 -10.99 -0.08 10.51 16 13 O -0.58 -15.63 14.70 5.54 0.08 -15.55 16 14 N -0.57 -14.49 5.29 -10.96 -0.06 -14.55 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 19 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H 0.05 0.63 6.26 -51.93 -0.33 0.30 16 24 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.09 1.74 6.54 -51.93 -0.34 1.40 16 27 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 28 H 0.04 0.50 5.98 -51.93 -0.31 0.19 16 29 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.92 6.57 -51.93 -0.34 0.58 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.05 0.87 5.97 -51.93 -0.31 0.56 16 36 H 0.09 1.43 7.81 -51.93 -0.41 1.03 16 37 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -30.88 325.35 -8.86 -39.74 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.05 Total: 9.54 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.91 Total: -5.31 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.35 Total: -48.03 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.88 -8.86 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343077567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.165 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds