Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46952 * 2 1 4 4 C 1.46903 * 110.99776 * 59.19646 * 3 2 1 5 5 C 1.53003 * 109.46728 * 66.05075 * 4 3 2 6 6 C 1.50705 * 109.46819 * 180.02562 * 5 4 3 7 7 C 1.33384 * 125.20669 * 89.99776 * 6 5 4 8 8 C 1.38422 * 114.92263 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92166 * 0.02562 * 8 7 6 10 10 S 1.75887 * 125.19803 * 269.69038 * 6 5 4 11 11 C 1.46902 * 111.00142 * 295.24666 * 3 2 1 12 12 C 1.50695 * 109.47062 * 288.23431 * 11 3 2 13 13 O 1.21297 * 120.00254 * 354.30355 * 12 11 3 14 14 N 1.34783 * 120.00191 * 174.29547 * 12 11 3 15 15 C 1.37097 * 120.00343 * 180.02562 * 14 12 11 16 16 H 1.07997 * 119.99772 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00114 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00069 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47109 * 89.99999 * 19 17 15 21 21 H 1.48504 * 109.47026 * 209.99552 * 19 17 15 22 22 H 1.48499 * 109.47263 * 329.99762 * 19 17 15 23 23 H 1.08995 * 109.46753 * 300.00160 * 1 2 3 24 24 H 1.08991 * 109.47482 * 60.00721 * 1 2 3 25 25 H 1.09008 * 109.46528 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47030 * 240.00659 * 2 1 3 27 27 H 1.08998 * 109.47568 * 120.00174 * 2 1 3 28 28 H 1.08997 * 109.47459 * 306.05134 * 4 3 2 29 29 H 1.08999 * 109.46860 * 186.04370 * 4 3 2 30 30 H 1.08997 * 109.47102 * 59.99841 * 5 4 3 31 31 H 1.08999 * 109.46874 * 299.99286 * 5 4 3 32 32 H 1.08001 * 122.53832 * 359.95781 * 7 6 5 33 33 H 1.07997 * 122.54271 * 180.02562 * 8 7 6 34 34 H 1.08000 * 125.20918 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47253 * 48.23600 * 11 3 2 36 36 H 1.09003 * 109.47517 * 168.23536 * 11 3 2 37 37 H 0.97005 * 119.99860 * 0.02562 * 14 12 11 38 38 H 0.97002 * 119.99920 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5329 2.1154 1.1780 5 6 2.1481 1.5119 2.4422 6 6 1.6483 2.2608 3.6508 7 6 0.5530 1.9535 4.3472 8 6 0.2921 2.7862 5.4217 9 6 1.1754 3.7702 5.5975 10 16 2.4244 3.6692 4.3633 11 6 1.6436 2.0764 -1.2404 12 6 2.4634 1.5373 -2.3842 13 8 3.3510 0.7387 -2.1708 14 7 2.2102 1.9424 -3.6446 15 6 2.9556 1.4516 -4.6852 16 1 3.7455 0.7400 -4.4952 17 6 2.6949 1.8697 -5.9844 18 7 1.7335 2.7352 -6.2157 19 14 3.7101 1.2004 -7.4024 20 1 3.0683 -0.0289 -7.9338 21 1 3.7913 2.2210 -8.4781 22 1 5.0777 0.8769 -6.9226 23 1 -0.3632 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 0.4469 2.0386 1.2301 29 1 1.8197 3.1640 1.0994 30 1 3.2341 1.5887 2.3902 31 1 1.8612 0.4633 2.5209 32 1 -0.0824 1.1183 4.0919 33 1 -0.5618 2.6497 6.0686 34 1 1.1330 4.5123 6.3811 35 1 0.5853 1.9108 -1.4422 36 1 1.8300 3.1448 -1.1318 37 1 1.5005 2.5813 -3.8153 38 1 1.5517 3.0273 -7.1227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343077567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -19.619840 kcal Electronic energy + Delta-G solvation = -19449.431964 eV Core-core repulsion = 16417.833751 eV Total energy + Delta-G solvation = -3031.598213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53451 -39.10678 -38.18255 -35.88099 -33.67512 -33.23945 -31.35314 -29.44828 -27.60151 -26.02130 -25.29289 -23.67991 -21.58151 -20.60753 -20.06351 -19.76331 -18.04757 -17.72776 -17.07990 -16.76414 -16.50173 -16.11444 -15.78308 -15.23275 -14.96939 -14.66530 -14.15167 -14.07729 -13.61582 -13.59528 -13.42362 -13.09813 -13.06558 -12.94296 -12.83643 -12.70458 -12.40566 -12.26219 -12.11973 -12.02390 -11.63642 -11.48510 -11.33196 -10.30717 -9.98254 -9.52221 -9.37578 -9.10642 -8.44855 -5.93325 0.12503 0.76467 1.16768 1.38339 1.41624 1.54571 1.88865 2.08843 2.29472 2.77691 3.21915 3.44995 3.91949 3.98589 4.17958 4.23211 4.28995 4.32032 4.35216 4.48192 4.53928 4.59302 4.61490 4.66451 4.75661 4.94899 4.98416 5.07014 5.16056 5.29658 5.38296 5.42481 5.44092 5.66056 5.91241 6.11675 6.24391 6.63363 7.15419 7.59448 8.15902 8.72749 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.003024 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.686364 B = 9257.306482 C = 9504.074502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.063 3.937 5 C -0.039 4.039 6 C -0.177 4.177 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.217 4.217 10 S 0.070 5.930 11 C 0.054 3.946 12 C 0.444 3.556 13 O -0.614 6.614 14 N -0.577 5.577 15 C -0.331 4.331 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.273 1.273 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.395 0.605 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.683 1.668 21.450 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.077 4.077 3 N -0.255 5.255 4 C -0.065 4.065 5 C -0.078 4.078 6 C -0.295 4.295 7 C -0.174 4.174 8 C -0.170 4.170 9 C -0.353 4.353 10 S 0.333 5.667 11 C -0.077 4.077 12 C 0.231 3.769 13 O -0.500 6.500 14 N -0.215 5.215 15 C -0.460 4.460 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.563 5.563 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.198 1.198 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.200 0.800 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.229 0.771 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.340 2.067 21.127 21.667 hybrid contribution -1.858 -0.623 -0.794 2.114 sum -6.199 1.444 20.333 21.306 Atomic orbital electron populations 1.22369 0.96846 1.03156 1.02020 1.22137 0.93612 0.89524 1.02430 1.61699 1.60450 1.02646 1.00726 1.22164 0.98297 0.97607 0.88424 1.20016 1.00525 0.98869 0.88420 1.24482 1.00843 1.01350 1.02847 1.20412 0.97806 1.02640 0.96548 1.20448 1.01683 0.95453 0.99438 1.25923 0.99265 1.05512 1.04568 1.84544 1.28977 1.28118 1.25060 1.21760 0.97595 0.99453 0.88884 1.20793 0.86954 0.84935 0.84208 1.90480 1.36130 1.38653 1.84699 1.41950 1.33118 1.41143 1.05300 1.19641 1.15221 1.24660 0.86491 0.90418 1.26018 0.98132 0.96676 1.00508 1.69677 1.31341 1.32319 1.23003 0.84947 0.78221 0.78104 0.77187 1.19622 1.19549 1.19829 0.90574 0.93649 0.90977 0.93331 0.89380 0.92705 0.91062 0.91148 0.89080 0.83049 0.82186 0.79966 0.91063 0.87838 0.77146 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.48 9.26 71.98 0.67 -3.82 16 2 C 0.05 1.55 5.52 86.30 0.48 2.02 16 3 N -0.53 -17.18 4.31 -900.78 -3.88 -21.06 16 4 C 0.06 1.54 4.68 86.30 0.40 1.94 16 5 C -0.04 -0.85 5.63 29.85 0.17 -0.68 16 6 C -0.18 -3.55 5.76 24.59 0.14 -3.41 16 7 C -0.14 -2.46 10.05 21.21 0.21 -2.25 16 8 C -0.14 -2.10 10.18 21.22 0.22 -1.88 16 9 C -0.22 -3.35 11.23 66.72 0.75 -2.60 16 10 S 0.07 1.35 23.33 -56.49 -1.32 0.03 16 11 C 0.05 1.93 5.34 85.56 0.46 2.39 16 12 C 0.44 21.60 7.36 87.65 0.65 22.25 16 13 O -0.61 -34.64 14.70 -3.08 -0.05 -34.68 16 14 N -0.58 -30.22 5.29 -306.98 -1.62 -31.84 16 15 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 18 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 19 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H 0.08 1.51 6.26 -2.39 -0.01 1.50 16 24 H 0.04 1.21 6.29 -2.39 -0.02 1.20 16 25 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.05 1.90 6.54 -2.39 -0.02 1.89 16 27 H 0.09 2.33 6.51 -2.39 -0.02 2.32 16 28 H 0.05 1.20 5.98 -2.39 -0.01 1.18 16 29 H 0.07 1.77 7.86 -2.39 -0.02 1.75 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.83 6.57 -2.39 -0.02 1.81 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.07 2.29 5.97 -2.39 -0.01 2.27 16 36 H 0.10 3.33 7.81 -2.39 -0.02 3.31 16 37 H 0.39 19.67 7.90 -92.70 -0.73 18.94 16 38 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -67.52 325.35 1.21 -66.31 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.35 Total: 30.38 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.42 Total: -4.57 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -5.22 Total: -103.03 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.05 Total: -34.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.03 kcal Total: -67.52 1.21 -66.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343077567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.694 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds