Wall clock time and date at job start Tue Mar 31 2020 05:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00363 * 2 1 4 4 C 1.52998 * 109.47178 * 293.95804 * 3 2 1 5 5 C 1.50699 * 109.47491 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00431 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99591 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00391 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47121 * 89.99782 * 9 7 5 11 11 H 1.48504 * 109.47277 * 209.99968 * 9 7 5 12 12 H 1.48496 * 109.46950 * 330.00114 * 9 7 5 13 13 C 1.46904 * 110.99839 * 123.95514 * 2 1 3 14 14 C 1.50697 * 109.47321 * 66.04881 * 13 2 1 15 15 O 1.21280 * 120.00055 * 359.97438 * 14 13 2 16 16 N 1.34781 * 120.00109 * 180.02562 * 14 13 2 17 17 C 1.46500 * 119.99760 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46801 * 179.97438 * 17 16 14 19 19 C 1.33381 * 125.20534 * 90.00074 * 18 17 16 20 20 C 1.38427 * 114.92374 * 180.02562 * 19 18 17 21 21 C 1.33387 * 114.91991 * 0.25034 * 20 19 18 22 22 S 1.75886 * 109.59194 * 359.63459 * 21 20 19 23 23 H 1.08999 * 109.46971 * 296.04927 * 1 2 3 24 24 H 1.08998 * 109.47063 * 56.04330 * 1 2 3 25 25 H 1.08997 * 109.46975 * 176.04873 * 1 2 3 26 26 H 1.09005 * 109.46954 * 53.95012 * 3 2 1 27 27 H 1.08996 * 109.47551 * 173.94951 * 3 2 1 28 28 H 1.09005 * 109.46531 * 299.99466 * 4 3 2 29 29 H 1.08996 * 109.47576 * 59.99162 * 4 3 2 30 30 H 0.97000 * 119.99840 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46945 * 306.04111 * 13 2 1 32 32 H 1.09003 * 109.46693 * 186.04852 * 13 2 1 33 33 H 0.96998 * 119.99295 * 359.97438 * 16 14 13 34 34 H 1.09000 * 109.46999 * 60.00096 * 17 16 14 35 35 H 1.08995 * 109.47363 * 300.00014 * 17 16 14 36 36 H 1.08001 * 122.53741 * 0.05729 * 19 18 17 37 37 H 1.08002 * 122.53759 * 179.97438 * 20 19 18 38 38 H 1.08002 * 125.20431 * 179.75072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1722 3.4641 -1.3185 6 1 2.7202 3.8321 -0.4638 7 6 1.9672 4.2812 -2.4099 8 7 1.3002 3.8329 -3.4510 9 14 2.6368 6.0251 -2.4100 10 1 4.0089 6.0285 -2.9778 11 1 1.7577 6.8929 -3.2344 12 1 2.6760 6.5403 -1.0178 13 6 1.9954 -0.7660 1.1376 14 6 1.6370 -2.2205 0.9728 15 8 1.0048 -2.5832 0.0035 16 7 2.0180 -3.1181 1.9033 17 6 1.6691 -4.5319 1.7433 18 6 2.2092 -5.3177 2.9103 19 6 1.5552 -5.5507 4.0492 20 6 2.2543 -6.2985 4.9809 21 6 3.4782 -6.6684 4.6007 22 16 3.7989 -6.0672 2.9792 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5611 1.9273 0.8309 27 1 3.0798 1.3444 0.1083 28 1 2.0659 1.5015 -2.1491 29 1 0.5473 2.0845 -1.4265 30 1 1.1556 4.4079 -4.2187 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 2.5233 -2.8278 2.6787 34 1 2.1035 -4.9109 0.8183 35 1 0.5848 -4.6364 1.7051 36 1 0.5556 -5.1840 4.2304 37 1 1.8419 -6.5588 5.9445 38 1 4.1662 -7.2498 5.1965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353138715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:08 Heat of formation + Delta-G solvation = 2.629122 kcal Electronic energy + Delta-G solvation = -18859.679085 eV Core-core repulsion = 15829.045659 eV Total energy + Delta-G solvation = -3030.633426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79332 -38.27825 -36.61686 -34.82092 -32.98847 -31.05620 -29.84222 -27.89333 -26.23070 -25.34057 -23.44832 -22.57689 -20.44761 -19.87132 -19.65556 -17.89122 -16.70890 -16.44751 -16.06249 -15.69153 -15.48986 -14.62314 -14.48256 -14.29366 -13.91392 -13.53257 -13.30451 -13.09399 -12.60574 -12.57484 -12.46891 -12.13251 -12.08596 -11.43842 -11.14507 -11.12231 -10.98656 -10.83053 -10.57394 -9.91134 -9.76583 -9.37689 -9.18722 -9.09211 -9.04106 -8.87052 -8.29594 -7.69187 -5.95709 -3.98495 0.50223 1.21061 1.60031 2.27214 2.76034 3.20035 3.34313 3.40326 3.43153 4.26643 4.43691 4.63679 4.65947 4.85335 4.97172 5.13235 5.25019 5.39699 5.42800 5.44348 5.49685 5.70473 5.84238 5.93600 6.03641 6.05100 6.23987 6.33745 6.48693 6.68711 6.97456 7.33443 7.53534 7.59759 7.81816 7.93998 8.13147 8.32029 8.46563 9.08959 9.64746 11.15637 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.002463 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.780048 B =11364.671100 C =11583.488624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.525 5.525 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.522 4.522 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.037 3.963 14 C 0.515 3.485 15 O -0.514 6.514 16 N -0.737 5.737 17 C 0.195 3.805 18 C -0.200 4.200 19 C -0.118 4.118 20 C -0.139 4.139 21 C -0.210 4.210 22 S 0.117 5.883 23 H 0.011 0.989 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.400 0.600 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -21.334 18.569 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.250 5.250 3 C -0.063 4.063 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.095 4.095 14 C 0.302 3.698 15 O -0.388 6.388 16 N -0.392 5.392 17 C 0.069 3.931 18 C -0.318 4.318 19 C -0.149 4.149 20 C -0.169 4.169 21 C -0.346 4.346 22 S 0.381 5.619 23 H 0.030 0.970 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.784 -21.869 16.224 27.492 hybrid contribution -0.775 1.493 2.184 2.757 sum 3.009 -20.376 18.408 27.624 Atomic orbital electron populations 1.22539 0.87166 1.02546 1.00413 1.61814 1.08529 1.15544 1.39072 1.22405 0.98483 0.84655 1.00751 1.19101 0.97103 0.93939 0.90844 1.21176 1.35190 0.97786 1.01937 0.92805 1.25004 0.95327 0.98461 0.95595 1.69984 1.40694 1.36418 1.05996 0.86591 0.78846 0.84606 0.77907 1.20657 1.21249 1.19971 1.21972 1.02114 0.90575 0.94828 1.20877 0.78906 0.88095 0.81966 1.90687 1.38220 1.80398 1.29488 1.46141 1.59516 1.07027 1.26517 1.19566 1.00182 0.79676 0.93635 1.24551 0.98733 1.07815 1.00709 1.20244 1.01710 1.00301 0.92689 1.20203 0.94436 1.00946 1.01348 1.25751 1.01355 1.07897 0.99628 1.84518 1.14797 1.49673 1.12917 0.97013 0.90244 0.90716 0.96079 0.92059 0.95583 0.96283 0.92991 0.92569 0.88159 0.76580 0.90409 0.89683 0.84005 0.84132 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.01 60.06 0.54 0.94 16 2 N -0.53 -10.18 4.50 -244.37 -1.10 -11.28 16 3 C 0.06 1.36 4.90 -3.83 -0.02 1.34 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.04 0.53 5.45 -4.98 -0.03 0.51 16 14 C 0.52 7.41 7.55 -10.98 -0.08 7.33 16 15 O -0.51 -9.50 14.31 5.56 0.08 -9.42 16 16 N -0.74 -7.63 5.55 -61.47 -0.34 -7.98 16 17 C 0.19 1.88 6.16 -5.19 -0.03 1.85 16 18 C -0.20 -1.63 5.88 -36.00 -0.21 -1.84 16 19 C -0.12 -0.85 10.05 -41.21 -0.41 -1.27 16 20 C -0.14 -0.89 10.18 -41.21 -0.42 -1.31 16 21 C -0.21 -1.34 11.23 29.04 0.33 -1.01 16 22 S 0.12 0.88 23.33 -107.50 -2.51 -1.62 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 24 H 0.08 1.65 6.30 -51.93 -0.33 1.32 16 25 H 0.07 1.39 5.88 -51.93 -0.31 1.08 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.54 6.47 -51.93 -0.34 0.20 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.10 1.29 7.93 -51.93 -0.41 0.88 16 33 H 0.40 3.21 8.46 -40.82 -0.35 2.86 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -33.57 333.73 -9.49 -43.06 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.48 Total: -1.45 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.89 Total: -6.56 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.70 Total: -45.85 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.57 -9.49 -43.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353138715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.693 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds