Wall clock time and date at job start Tue Mar 31 2020 05:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00363 * 2 1 4 4 C 1.52998 * 109.47178 * 293.95804 * 3 2 1 5 5 C 1.50699 * 109.47491 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00431 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99591 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00391 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47121 * 89.99782 * 9 7 5 11 11 H 1.48504 * 109.47277 * 209.99968 * 9 7 5 12 12 H 1.48496 * 109.46950 * 330.00114 * 9 7 5 13 13 C 1.46904 * 110.99839 * 123.95514 * 2 1 3 14 14 C 1.50697 * 109.47321 * 66.04881 * 13 2 1 15 15 O 1.21280 * 120.00055 * 359.97438 * 14 13 2 16 16 N 1.34781 * 120.00109 * 180.02562 * 14 13 2 17 17 C 1.46500 * 119.99760 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46801 * 179.97438 * 17 16 14 19 19 C 1.33381 * 125.20534 * 90.00074 * 18 17 16 20 20 C 1.38427 * 114.92374 * 180.02562 * 19 18 17 21 21 C 1.33387 * 114.91991 * 0.25034 * 20 19 18 22 22 S 1.75886 * 109.59194 * 359.63459 * 21 20 19 23 23 H 1.08999 * 109.46971 * 296.04927 * 1 2 3 24 24 H 1.08998 * 109.47063 * 56.04330 * 1 2 3 25 25 H 1.08997 * 109.46975 * 176.04873 * 1 2 3 26 26 H 1.09005 * 109.46954 * 53.95012 * 3 2 1 27 27 H 1.08996 * 109.47551 * 173.94951 * 3 2 1 28 28 H 1.09005 * 109.46531 * 299.99466 * 4 3 2 29 29 H 1.08996 * 109.47576 * 59.99162 * 4 3 2 30 30 H 0.97000 * 119.99840 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46945 * 306.04111 * 13 2 1 32 32 H 1.09003 * 109.46693 * 186.04852 * 13 2 1 33 33 H 0.96998 * 119.99295 * 359.97438 * 16 14 13 34 34 H 1.09000 * 109.46999 * 60.00096 * 17 16 14 35 35 H 1.08995 * 109.47363 * 300.00014 * 17 16 14 36 36 H 1.08001 * 122.53741 * 0.05729 * 19 18 17 37 37 H 1.08002 * 122.53759 * 179.97438 * 20 19 18 38 38 H 1.08002 * 125.20431 * 179.75072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1722 3.4641 -1.3185 6 1 2.7202 3.8321 -0.4638 7 6 1.9672 4.2812 -2.4099 8 7 1.3002 3.8329 -3.4510 9 14 2.6368 6.0251 -2.4100 10 1 4.0089 6.0285 -2.9778 11 1 1.7577 6.8929 -3.2344 12 1 2.6760 6.5403 -1.0178 13 6 1.9954 -0.7660 1.1376 14 6 1.6370 -2.2205 0.9728 15 8 1.0048 -2.5832 0.0035 16 7 2.0180 -3.1181 1.9033 17 6 1.6691 -4.5319 1.7433 18 6 2.2092 -5.3177 2.9103 19 6 1.5552 -5.5507 4.0492 20 6 2.2543 -6.2985 4.9809 21 6 3.4782 -6.6684 4.6007 22 16 3.7989 -6.0672 2.9792 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5611 1.9273 0.8309 27 1 3.0798 1.3444 0.1083 28 1 2.0659 1.5015 -2.1491 29 1 0.5473 2.0845 -1.4265 30 1 1.1556 4.4079 -4.2187 31 1 1.5611 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 2.5233 -2.8278 2.6787 34 1 2.1035 -4.9109 0.8183 35 1 0.5848 -4.6364 1.7051 36 1 0.5556 -5.1840 4.2304 37 1 1.8419 -6.5588 5.9445 38 1 4.1662 -7.2498 5.1965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353138715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:08 Heat of formation + Delta-G solvation = -20.939209 kcal Electronic energy + Delta-G solvation = -18860.701084 eV Core-core repulsion = 15829.045659 eV Total energy + Delta-G solvation = -3031.655425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92878 -38.92912 -38.06408 -35.81824 -35.09857 -32.17596 -31.41138 -29.11062 -27.52239 -26.75053 -24.70844 -23.70885 -21.76247 -21.41987 -20.20688 -18.70821 -18.55265 -17.67396 -17.02548 -16.78841 -16.50876 -16.24419 -16.02405 -15.65254 -15.15104 -14.63471 -14.20613 -14.13120 -13.96989 -13.80642 -13.61757 -13.24788 -13.19660 -12.87342 -12.77547 -12.67608 -12.46763 -12.39032 -11.83258 -11.66708 -11.48957 -11.25463 -10.83183 -10.52652 -10.15776 -9.72190 -9.43149 -9.15972 -8.17685 -6.29676 -0.05195 0.65404 1.07385 1.41753 1.44041 1.54795 1.63752 1.71964 2.23718 2.43233 3.15609 3.19102 3.60650 3.88029 4.17303 4.22676 4.25893 4.36213 4.42663 4.50017 4.56429 4.66582 4.68445 4.75109 4.80585 5.04485 5.13551 5.17760 5.33073 5.36784 5.48239 5.54338 5.66142 5.79447 6.08353 6.15141 6.32826 6.56616 6.88510 7.26871 7.39558 8.94817 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.002463 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.780048 B =11364.671100 C =11583.488624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.550 5.550 3 C 0.081 3.919 4 C 0.033 3.967 5 C -0.541 4.541 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.259 1.259 13 C 0.037 3.963 14 C 0.517 3.483 15 O -0.563 6.563 16 N -0.716 5.716 17 C 0.198 3.802 18 C -0.216 4.216 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.202 4.202 22 S 0.096 5.904 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.073 0.927 28 H -0.014 1.014 29 H -0.008 1.008 30 H 0.263 0.737 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -21.295 21.479 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.275 5.275 3 C -0.046 4.046 4 C -0.005 4.005 5 C -0.579 4.579 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.575 5.575 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.183 1.183 13 C -0.094 4.094 14 C 0.304 3.696 15 O -0.441 6.441 16 N -0.370 5.370 17 C 0.073 3.927 18 C -0.333 4.333 19 C -0.144 4.144 20 C -0.176 4.176 21 C -0.338 4.338 22 S 0.360 5.640 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.005 0.995 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.967 -21.855 19.200 29.512 hybrid contribution -1.138 1.351 1.341 2.218 sum 3.830 -20.504 20.541 29.275 Atomic orbital electron populations 1.22379 0.87290 1.02147 0.99907 1.61615 1.08710 1.14700 1.42429 1.22031 0.99213 0.85658 0.97656 1.18950 0.95002 0.93863 0.92672 1.21630 1.35188 0.98670 1.02443 0.91568 1.26045 0.95484 1.03531 0.95077 1.70145 1.42134 1.38366 1.06854 0.85373 0.78143 0.78421 0.78622 1.19767 1.20990 1.18342 1.22070 1.03348 0.89935 0.94045 1.20859 0.78397 0.88510 0.81819 1.90677 1.40723 1.81086 1.31618 1.45947 1.58245 1.06959 1.25868 1.19488 1.00031 0.79163 0.94012 1.24336 0.99350 1.08980 1.00640 1.20482 1.02057 0.99533 0.92316 1.20462 0.94396 1.00678 1.02096 1.26070 1.01740 1.07301 0.98672 1.84607 1.14755 1.50227 1.14446 0.95092 0.93465 0.90580 0.95049 0.90820 0.99515 0.98956 0.92853 0.89587 0.86049 0.74861 0.91731 0.89960 0.82989 0.81948 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 9.01 127.69 1.15 2.33 16 2 N -0.55 -21.16 4.50 -927.05 -4.17 -25.34 16 3 C 0.08 3.44 4.90 86.30 0.42 3.86 16 4 C 0.03 1.80 4.90 29.85 0.15 1.95 16 5 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 9 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.04 0.99 5.45 85.56 0.47 1.46 16 14 C 0.52 14.38 7.55 87.66 0.66 15.04 16 15 O -0.56 -21.07 14.31 -3.03 -0.04 -21.11 16 16 N -0.72 -13.79 5.55 -466.79 -2.59 -16.38 16 17 C 0.20 3.72 6.16 85.63 0.53 4.25 16 18 C -0.22 -3.22 5.88 24.59 0.14 -3.08 16 19 C -0.11 -1.38 10.05 21.22 0.21 -1.16 16 20 C -0.15 -1.47 10.18 21.22 0.22 -1.26 16 21 C -0.20 -2.05 11.23 66.72 0.75 -1.31 16 22 S 0.10 1.33 23.33 -56.49 -1.32 0.01 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 2.07 6.30 -2.39 -0.02 2.05 16 25 H 0.08 2.88 5.88 -2.39 -0.01 2.87 16 26 H 0.03 1.26 8.12 -2.38 -0.02 1.24 16 27 H 0.07 2.91 7.93 -2.39 -0.02 2.89 16 28 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 29 H -0.01 -0.47 6.47 -2.39 -0.02 -0.49 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.09 1.87 8.12 -2.38 -0.02 1.85 16 32 H 0.12 2.77 7.93 -2.39 -0.02 2.75 16 33 H 0.41 5.66 8.46 -92.71 -0.78 4.87 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -74.44 333.73 -0.14 -74.58 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.27 Total: 8.64 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.39 Total: -8.63 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -6.48 Total: -100.22 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.04 Total: -21.11 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -74.44 -0.14 -74.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353138715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.640 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds