Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48504 * 109.46863 * 270.00277 * 3 2 1 5 5 H 1.48500 * 109.47089 * 29.99896 * 3 2 1 6 6 H 1.48491 * 109.47180 * 150.00217 * 3 2 1 7 7 C 1.38801 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99401 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00078 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46984 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46898 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46923 * 180.02562 * 12 11 10 14 14 C 1.48539 * 111.00184 * 287.39814 * 13 12 11 15 15 C 1.54929 * 103.22780 * 200.28133 * 14 13 12 16 16 C 1.54597 * 102.92510 * 37.41096 * 15 14 13 17 17 H 1.08994 * 110.39377 * 219.08530 * 16 15 14 18 18 N 1.46499 * 110.30550 * 96.95637 * 16 15 14 19 19 C 1.34430 * 126.82518 * 329.28900 * 18 16 15 20 20 N 1.30832 * 108.07731 * 179.97438 * 19 18 16 21 21 C 1.33244 * 109.83031 * 0.02562 * 20 19 18 22 22 N 1.30715 * 108.94545 * 359.97438 * 21 20 19 23 23 C 1.47902 * 111.00055 * 170.00345 * 13 12 11 24 24 H 0.96995 * 119.99967 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46876 * 60.00012 * 10 9 7 26 26 H 1.09000 * 109.46855 * 299.99838 * 10 9 7 27 27 H 1.09002 * 109.47080 * 60.00160 * 11 10 9 28 28 H 1.08999 * 109.47373 * 300.00238 * 11 10 9 29 29 H 1.09002 * 109.46886 * 60.00333 * 12 11 10 30 30 H 1.09000 * 109.47136 * 300.00083 * 12 11 10 31 31 H 1.09000 * 110.66618 * 318.71375 * 14 13 12 32 32 H 1.09007 * 110.66527 * 81.67837 * 14 13 12 33 33 H 1.09008 * 110.72322 * 279.05433 * 15 14 13 34 34 H 1.09000 * 110.72507 * 155.77206 * 15 14 13 35 35 H 1.07993 * 125.96070 * 359.97438 * 19 18 16 36 36 H 1.08005 * 125.52896 * 179.74108 * 21 20 19 37 37 H 1.08996 * 109.91604 * 26.48673 * 23 13 12 38 38 H 1.09003 * 110.07868 * 265.29052 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0005 13 7 2.6361 -7.6835 0.0005 14 6 2.0617 -8.0368 1.3240 15 6 2.0704 -9.5860 1.3121 16 6 3.3889 -9.9187 0.5767 17 1 3.2490 -10.7723 -0.0865 18 7 4.4542 -10.1961 1.5434 19 6 4.5836 -9.6687 2.7732 20 7 5.6625 -10.1694 3.3182 21 6 6.2460 -11.0158 2.4705 22 7 5.5430 -11.0661 1.3697 23 6 3.7236 -8.6567 -0.2398 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8905 26 1 3.1244 -3.7314 -0.8895 27 1 1.3704 -5.4847 -0.8886 28 1 1.3708 -5.4841 0.8914 29 1 3.7605 -6.1476 0.8901 30 1 3.7593 -6.1479 -0.8899 31 1 2.6884 -7.6548 2.1298 32 1 1.0444 -7.6559 1.4159 33 1 1.2131 -9.9723 0.7606 34 1 2.0857 -9.9795 2.3284 35 1 3.9138 -8.9561 3.2313 36 1 7.1547 -11.5677 2.6606 37 1 4.6745 -8.2405 0.0928 38 1 3.7771 -8.9038 -1.3001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368890139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = 89.673355 kcal Electronic energy + Delta-G solvation = -19152.648933 eV Core-core repulsion = 16158.082779 eV Total energy + Delta-G solvation = -2994.566154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.46001 -39.43026 -35.16301 -32.76724 -32.43556 -31.55203 -30.24569 -28.96660 -25.89690 -25.18376 -23.38791 -22.33075 -22.02715 -20.86703 -20.64792 -17.61447 -17.48584 -16.46989 -15.88227 -15.68974 -15.31820 -14.96065 -14.81964 -14.34030 -14.10617 -13.90733 -13.44885 -13.00122 -12.70040 -12.68327 -12.19627 -11.96632 -11.78364 -11.63038 -11.51562 -11.30680 -11.07662 -10.83319 -10.64773 -10.41290 -10.31094 -10.11401 -10.02687 -9.56694 -9.07540 -8.71557 -8.33103 -6.55083 -6.24652 -3.95064 1.29505 1.90172 2.66786 3.19785 3.20796 3.27809 3.46933 3.75073 3.83879 4.00315 4.03546 4.20867 4.42234 4.49430 4.64026 4.80556 4.99069 5.07339 5.11684 5.15261 5.22936 5.29402 5.42799 5.48250 5.53054 5.60916 5.63948 5.80153 5.94625 5.98553 6.11120 6.24704 6.40218 6.50483 6.62188 6.67660 6.81813 7.58846 7.77134 8.34835 9.21787 10.83540 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.002745 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.366620 B =10198.693779 C =10594.151380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.131 6.131 10 C -0.114 4.114 11 C -0.090 4.090 12 C 0.051 3.949 13 N -0.510 5.510 14 C 0.028 3.972 15 C -0.132 4.132 16 C 0.145 3.855 17 H 0.117 0.883 18 N -0.371 5.371 19 C 0.255 3.745 20 N -0.547 5.547 21 C 0.195 3.805 22 N -0.320 5.320 23 C 0.027 3.973 24 H 0.267 0.733 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.214 0.786 36 H 0.217 0.783 37 H 0.054 0.946 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 -21.322 2.937 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.097 5.903 10 C -0.263 4.263 11 C -0.129 4.129 12 C -0.079 4.079 13 N -0.234 5.234 14 C -0.100 4.100 15 C -0.171 4.171 16 C 0.041 3.959 17 H 0.135 0.865 18 N -0.162 5.162 19 C -0.042 4.042 20 N -0.274 5.274 21 C -0.108 4.108 22 N -0.147 5.147 23 C -0.102 4.102 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.231 0.769 36 H 0.233 0.767 37 H 0.072 0.928 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.113 -21.765 2.165 22.462 hybrid contribution 2.414 1.580 0.611 2.949 sum 7.527 -20.185 2.777 21.721 Atomic orbital electron populations 1.70023 1.05912 1.27344 1.47251 1.25018 0.95088 0.99096 0.94594 0.86166 0.79445 0.81542 0.78385 1.20259 1.20734 1.19696 1.22689 0.94503 0.90801 1.58500 0.90999 1.84619 1.09410 0.99383 1.96850 1.23239 1.02959 0.97408 1.02728 1.21211 0.96657 0.91731 1.03280 1.22415 0.97475 0.86940 1.01020 1.64876 1.27373 1.02643 1.28500 1.23426 1.02146 0.93783 0.90626 1.22988 0.95900 0.96874 1.01360 1.22330 0.84087 0.99839 0.89615 0.86510 1.50771 1.20090 1.31984 1.13379 1.25995 0.96093 0.97812 0.84263 1.70591 1.08782 1.14973 1.33040 1.26042 1.00379 0.97053 0.87286 1.78054 0.98985 1.13804 1.23905 1.23306 0.94583 0.91108 1.01185 0.92293 0.92375 0.92145 0.90620 0.91642 0.94506 0.90644 0.93398 0.88282 0.87770 0.89762 0.76949 0.76678 0.92796 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.73 9.50 30.94 0.29 -14.44 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.13 -3.38 21.44 -107.50 -2.30 -5.68 16 10 C -0.11 -2.24 5.67 37.16 0.21 -2.02 16 11 C -0.09 -1.38 5.31 -26.73 -0.14 -1.52 16 12 C 0.05 0.62 4.71 -3.82 -0.02 0.60 16 13 N -0.51 -5.20 5.24 -230.45 -1.21 -6.41 16 14 C 0.03 0.23 5.75 -1.90 -0.01 0.22 16 15 C -0.13 -0.82 6.17 -24.87 -0.15 -0.98 16 16 C 0.14 1.11 4.15 -66.57 -0.28 0.83 16 17 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 18 N -0.37 -3.53 3.49 -54.80 -0.19 -3.72 16 19 C 0.26 2.40 11.29 -90.65 -1.02 1.37 16 20 N -0.55 -6.11 11.19 -15.83 -0.18 -6.28 16 21 C 0.20 1.95 13.03 -91.81 -1.20 0.76 16 22 N -0.32 -3.54 12.70 29.29 0.37 -3.16 16 23 C 0.03 0.24 6.46 -2.76 -0.02 0.23 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.99 7.37 -51.93 -0.38 0.61 16 29 H 0.04 0.45 7.83 -51.93 -0.41 0.04 16 30 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.05 0.38 6.70 -51.93 -0.35 0.04 16 32 H 0.10 0.85 7.80 -51.93 -0.40 0.45 16 33 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.08 0.45 7.23 -51.93 -0.38 0.08 16 35 H 0.21 1.39 6.61 -52.49 -0.35 1.05 16 36 H 0.22 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.05 0.56 7.56 -51.93 -0.39 0.16 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -33.28 327.88 -10.87 -44.15 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.58 Total: -2.11 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.43 Total: -13.04 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.47 Total: -44.69 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.68 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.28 -10.87 -44.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368890139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.825 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds