Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35948 * 117.00035 * 2 1 4 4 C 1.38271 * 121.63966 * 180.02562 * 3 2 1 5 5 C 1.35061 * 114.72338 * 180.26716 * 4 3 2 6 6 C 1.50694 * 127.19842 * 179.72419 * 5 4 3 7 7 N 1.46899 * 109.47255 * 90.00043 * 6 5 4 8 8 C 1.46849 * 110.99895 * 45.78621 * 7 6 5 9 9 C 1.53032 * 109.52583 * 185.83751 * 8 7 6 10 10 C 1.53120 * 109.28337 * 300.82431 * 9 8 7 11 11 C 1.50695 * 109.57751 * 177.58446 * 10 9 8 12 12 H 1.07997 * 120.00565 * 240.28785 * 11 10 9 13 13 C 1.37881 * 119.99890 * 60.28786 * 11 10 9 14 14 N 1.31514 * 119.99755 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00277 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46824 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47036 * 119.99890 * 15 13 11 18 18 H 1.48489 * 109.47180 * 240.00134 * 15 13 11 19 19 C 1.53124 * 109.15557 * 57.64945 * 10 9 8 20 20 C 1.46844 * 111.00181 * 169.99736 * 7 6 5 21 21 S 1.72024 * 105.60012 * 359.64837 * 5 4 3 22 22 N 1.30342 * 121.64255 * 0.02562 * 3 2 1 23 23 H 1.08999 * 109.47060 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47046 * 299.99873 * 1 2 3 25 25 H 1.09002 * 109.46909 * 59.99902 * 1 2 3 26 26 H 1.08002 * 122.63485 * 359.97438 * 4 3 2 27 27 H 1.09000 * 109.47252 * 210.00290 * 6 5 4 28 28 H 1.09007 * 109.47432 * 330.00082 * 6 5 4 29 29 H 1.09001 * 109.46444 * 305.86133 * 8 7 6 30 30 H 1.09006 * 109.46088 * 65.82518 * 8 7 6 31 31 H 1.09003 * 109.50593 * 180.88179 * 9 8 7 32 32 H 1.09008 * 109.53342 * 60.78588 * 9 8 7 33 33 H 1.08992 * 109.52314 * 297.75116 * 10 9 8 34 34 H 0.97004 * 120.00522 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.50139 * 182.40278 * 19 10 9 36 36 H 1.09006 * 109.53729 * 62.31119 * 19 10 9 37 37 H 1.08996 * 109.46502 * 294.17413 * 20 7 6 38 38 H 1.09000 * 109.46261 * 54.15979 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3231 -0.0005 5 6 3.8882 2.5916 0.0053 6 6 5.3284 3.0350 0.0121 7 7 5.8016 3.1836 -1.3707 8 6 4.8217 3.9117 -2.1868 9 6 5.2785 3.9208 -3.6474 10 6 6.6509 4.5929 -3.7438 11 6 7.1338 4.5526 -5.1707 12 1 8.0547 4.0442 -5.4151 13 6 6.3998 5.1648 -6.1644 14 7 5.2780 5.7835 -5.8670 15 14 6.9986 5.1155 -7.9331 16 1 8.2767 4.3627 -8.0021 17 1 5.9820 4.4428 -8.7813 18 1 7.2126 6.5012 -8.4220 19 6 7.6411 3.8443 -2.8472 20 6 7.1158 3.8375 -1.4098 21 16 2.4910 3.5951 0.0010 22 7 1.3680 2.3243 0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0785 0.4637 -0.0006 27 1 5.4119 3.9909 0.5293 28 1 5.9357 2.2897 0.5258 29 1 3.8512 3.4211 -2.1128 30 1 4.7387 4.9369 -1.8259 31 1 4.5589 4.4747 -4.2503 32 1 5.3483 2.8965 -4.0138 33 1 6.5731 5.6290 -3.4146 34 1 4.7617 6.2146 -6.5659 35 1 8.6095 4.3435 -2.8784 36 1 7.7489 2.8186 -3.2001 37 1 7.0221 4.8630 -1.0526 38 1 7.8116 3.2927 -0.7716 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401034220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = 6.254142 kcal Electronic energy + Delta-G solvation = -20017.517959 eV Core-core repulsion = 16987.041726 eV Total energy + Delta-G solvation = -3030.476233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15616 -38.51070 -36.70834 -34.24520 -32.15923 -30.50475 -29.84681 -28.21625 -26.77030 -24.78444 -23.01087 -22.11924 -21.45026 -19.83424 -18.59572 -18.11076 -17.31945 -16.46873 -16.22109 -15.43764 -15.00468 -14.62670 -14.45508 -13.88052 -13.75634 -13.45773 -12.97603 -12.81070 -12.41595 -12.30074 -11.97776 -11.93014 -11.57354 -11.07319 -10.97145 -10.90801 -10.77716 -10.66591 -10.45329 -10.24222 -9.99827 -9.53538 -9.45281 -8.97267 -8.74465 -8.31146 -8.18211 -7.86624 -5.96420 -4.01699 0.69222 1.39240 1.75224 2.48744 3.09742 3.31360 3.39634 3.43465 4.37697 4.46557 4.58903 4.99997 5.06347 5.10375 5.12669 5.34007 5.38929 5.54655 5.63574 5.72572 5.79215 5.86003 6.04001 6.13292 6.16746 6.25803 6.56715 6.59340 6.82459 7.03986 7.04631 7.10576 7.38762 7.54085 7.58913 7.81032 8.04173 8.15427 8.48724 9.02163 9.62894 11.09841 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.004207 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.259194 B = 6653.767005 C = 7223.771111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.310 3.690 4 C -0.195 4.195 5 C -0.134 4.134 6 C 0.123 3.877 7 N -0.527 5.527 8 C 0.048 3.952 9 C -0.102 4.102 10 C 0.047 3.953 11 C -0.510 4.510 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.106 4.106 20 C 0.060 3.940 21 S 0.289 5.711 22 N -0.537 5.537 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.165 0.835 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.021 0.979 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -7.292 14.382 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.203 6.203 3 C 0.096 3.904 4 C -0.231 4.231 5 C -0.263 4.263 6 C -0.006 4.006 7 N -0.253 5.253 8 C -0.080 4.080 9 C -0.141 4.141 10 C 0.029 3.971 11 C -0.548 4.548 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.144 4.144 20 C -0.067 4.067 21 S 0.439 5.561 22 N -0.377 5.377 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.182 0.818 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.874 -6.331 14.098 16.914 hybrid contribution 0.851 -0.688 -0.698 1.298 sum -6.023 -7.019 13.400 16.282 Atomic orbital electron populations 1.22936 0.77116 1.03289 1.02469 1.86271 1.22671 1.22930 1.88412 1.20126 0.90081 0.85006 0.95176 1.20152 0.92364 0.99099 1.11466 1.25253 1.02510 0.97260 1.01319 1.20619 0.86909 1.00352 0.92720 1.62252 1.03703 1.52552 1.06819 1.22512 0.94035 0.94496 0.96938 1.21654 1.01301 1.00444 0.90661 1.18698 0.90590 0.94069 0.93792 1.21234 1.07480 1.33909 0.92204 0.92674 1.24969 0.94983 0.95238 0.98816 1.69881 1.14501 1.35988 1.32704 0.86585 0.78828 0.77619 0.85257 1.19820 1.21101 1.21139 1.21683 0.99021 1.01267 0.92416 1.22169 0.89195 0.95660 0.99682 1.84109 0.89847 1.12803 1.69370 1.76428 1.26731 1.01367 1.33147 0.88267 0.92380 0.92159 0.81797 0.93268 0.88679 0.92447 0.95565 0.88845 0.93809 0.96070 0.93138 0.92935 0.92347 0.95403 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.47 101.05 1.06 1.42 16 2 O -0.30 -3.88 10.54 -19.58 -0.21 -4.09 16 3 C 0.31 4.46 7.42 -18.17 -0.13 4.33 16 4 C -0.20 -2.66 10.15 -40.70 -0.41 -3.07 16 5 C -0.13 -1.85 4.52 -35.44 -0.16 -2.01 16 6 C 0.12 1.64 5.85 -4.98 -0.03 1.62 16 7 N -0.53 -8.95 4.80 -236.12 -1.13 -10.08 16 8 C 0.05 0.93 4.76 -3.84 -0.02 0.91 16 9 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 10 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 11 C -0.51 -13.91 8.57 -34.44 -0.29 -14.20 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 14 N -0.89 -25.37 11.37 55.43 0.63 -24.74 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -2.15 5.32 -26.65 -0.14 -2.29 16 20 C 0.06 1.01 5.42 -3.84 -0.02 0.99 16 21 S 0.29 4.07 22.15 -107.50 -2.38 1.69 16 22 N -0.54 -8.06 11.14 28.92 0.32 -7.74 16 23 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.06 1.09 5.52 -51.93 -0.29 0.80 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 32 H 0.04 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -29.40 319.33 -9.20 -38.60 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.64 Total: -2.40 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.58 Total: -12.33 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.18 Total: -42.56 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.21 Total: -4.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.38 Total: 1.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.40 -9.20 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401034220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.854 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds