Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35948 * 117.00035 * 2 1 4 4 C 1.38271 * 121.63966 * 180.02562 * 3 2 1 5 5 C 1.35061 * 114.72338 * 180.26716 * 4 3 2 6 6 C 1.50694 * 127.19842 * 179.72419 * 5 4 3 7 7 N 1.46899 * 109.47255 * 90.00043 * 6 5 4 8 8 C 1.46849 * 110.99895 * 45.78621 * 7 6 5 9 9 C 1.53032 * 109.52583 * 185.83751 * 8 7 6 10 10 C 1.53120 * 109.28337 * 300.82431 * 9 8 7 11 11 C 1.50695 * 109.57751 * 177.58446 * 10 9 8 12 12 H 1.07997 * 120.00565 * 240.28785 * 11 10 9 13 13 C 1.37881 * 119.99890 * 60.28786 * 11 10 9 14 14 N 1.31514 * 119.99755 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00277 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46824 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47036 * 119.99890 * 15 13 11 18 18 H 1.48489 * 109.47180 * 240.00134 * 15 13 11 19 19 C 1.53124 * 109.15557 * 57.64945 * 10 9 8 20 20 C 1.46844 * 111.00181 * 169.99736 * 7 6 5 21 21 S 1.72024 * 105.60012 * 359.64837 * 5 4 3 22 22 N 1.30342 * 121.64255 * 0.02562 * 3 2 1 23 23 H 1.08999 * 109.47060 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47046 * 299.99873 * 1 2 3 25 25 H 1.09002 * 109.46909 * 59.99902 * 1 2 3 26 26 H 1.08002 * 122.63485 * 359.97438 * 4 3 2 27 27 H 1.09000 * 109.47252 * 210.00290 * 6 5 4 28 28 H 1.09007 * 109.47432 * 330.00082 * 6 5 4 29 29 H 1.09001 * 109.46444 * 305.86133 * 8 7 6 30 30 H 1.09006 * 109.46088 * 65.82518 * 8 7 6 31 31 H 1.09003 * 109.50593 * 180.88179 * 9 8 7 32 32 H 1.09008 * 109.53342 * 60.78588 * 9 8 7 33 33 H 1.08992 * 109.52314 * 297.75116 * 10 9 8 34 34 H 0.97004 * 120.00522 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.50139 * 182.40278 * 19 10 9 36 36 H 1.09006 * 109.53729 * 62.31119 * 19 10 9 37 37 H 1.08996 * 109.46502 * 294.17413 * 20 7 6 38 38 H 1.09000 * 109.46261 * 54.15979 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3231 -0.0005 5 6 3.8882 2.5916 0.0053 6 6 5.3284 3.0350 0.0121 7 7 5.8016 3.1836 -1.3707 8 6 4.8217 3.9117 -2.1868 9 6 5.2785 3.9208 -3.6474 10 6 6.6509 4.5929 -3.7438 11 6 7.1338 4.5526 -5.1707 12 1 8.0547 4.0442 -5.4151 13 6 6.3998 5.1648 -6.1644 14 7 5.2780 5.7835 -5.8670 15 14 6.9986 5.1155 -7.9331 16 1 8.2767 4.3627 -8.0021 17 1 5.9820 4.4428 -8.7813 18 1 7.2126 6.5012 -8.4220 19 6 7.6411 3.8443 -2.8472 20 6 7.1158 3.8375 -1.4098 21 16 2.4910 3.5951 0.0010 22 7 1.3680 2.3243 0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0785 0.4637 -0.0006 27 1 5.4119 3.9909 0.5293 28 1 5.9357 2.2897 0.5258 29 1 3.8512 3.4211 -2.1128 30 1 4.7387 4.9369 -1.8259 31 1 4.5589 4.4747 -4.2503 32 1 5.3483 2.8965 -4.0138 33 1 6.5731 5.6290 -3.4146 34 1 4.7617 6.2146 -6.5659 35 1 8.6095 4.3435 -2.8784 36 1 7.7489 2.8186 -3.2001 37 1 7.0221 4.8630 -1.0526 38 1 7.8116 3.2927 -0.7716 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401034220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = -13.959992 kcal Electronic energy + Delta-G solvation = -20018.394510 eV Core-core repulsion = 16987.041726 eV Total energy + Delta-G solvation = -3031.352784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18576 -39.93542 -37.80961 -35.90891 -33.81804 -31.97156 -31.44698 -29.23803 -28.15287 -26.35727 -24.35852 -23.65131 -22.88954 -21.02757 -20.22232 -19.19789 -18.46190 -18.31329 -17.33923 -16.88824 -16.35628 -16.07862 -15.73840 -15.18241 -15.00865 -14.73993 -14.56706 -14.25954 -14.06838 -13.56626 -13.37678 -13.08871 -12.86837 -12.84153 -12.60820 -12.24055 -12.07961 -12.03468 -11.97383 -11.84441 -11.74112 -11.32938 -10.82270 -10.67788 -10.56814 -10.37061 -9.31174 -9.19344 -8.06718 -6.19621 -0.38389 0.33034 0.68587 1.40168 1.42220 1.42582 1.53447 2.15789 2.44806 3.07512 3.20781 3.52803 3.99225 4.09835 4.22550 4.29828 4.32396 4.32948 4.41588 4.51370 4.63550 4.70119 4.76263 4.79765 4.84880 4.89506 5.00705 5.11452 5.13486 5.25520 5.35258 5.58258 5.64301 5.99913 6.01474 6.05199 6.21505 6.29063 6.42731 6.92948 7.48359 8.97889 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.004207 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.259194 B = 6653.767005 C = 7223.771111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.303 3.697 4 C -0.196 4.196 5 C -0.135 4.135 6 C 0.125 3.875 7 N -0.535 5.535 8 C 0.064 3.936 9 C -0.094 4.094 10 C 0.043 3.957 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 0.951 3.049 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.281 1.281 19 C -0.100 4.100 20 C 0.066 3.934 21 S 0.277 5.723 22 N -0.555 5.555 23 H 0.132 0.868 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.183 0.817 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.027 0.973 33 H -0.009 1.009 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.030 0.970 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -8.540 15.587 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.210 6.210 3 C 0.089 3.911 4 C -0.231 4.231 5 C -0.265 4.265 6 C -0.003 4.003 7 N -0.261 5.261 8 C -0.064 4.064 9 C -0.133 4.133 10 C 0.024 3.976 11 C -0.569 4.569 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.207 1.207 19 C -0.138 4.138 20 C -0.061 4.061 21 S 0.427 5.573 22 N -0.395 5.395 23 H 0.150 0.850 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.200 0.800 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.046 -7.590 15.317 18.133 hybrid contribution 0.550 -0.335 -1.064 1.244 sum -5.497 -7.926 14.254 17.210 Atomic orbital electron populations 1.23180 0.75544 1.05373 1.02122 1.86271 1.24277 1.22311 1.88168 1.20404 0.90630 0.85291 0.94798 1.20389 0.92335 0.99673 1.10723 1.25351 1.02541 0.97114 1.01452 1.20770 0.86823 1.02216 0.90517 1.62156 1.03171 1.51755 1.08999 1.22174 0.94829 0.94743 0.94670 1.21403 1.00118 0.98429 0.93301 1.18678 0.92285 0.93069 0.93532 1.21639 1.07437 1.33789 0.94022 0.93004 1.25730 0.95146 0.95040 1.02739 1.70024 1.15421 1.36617 1.33764 0.85617 0.78481 0.77714 0.80525 1.19065 1.20924 1.20673 1.21547 0.98208 0.99990 0.94064 1.22121 0.89714 0.96648 0.97631 1.84114 0.90450 1.13008 1.69747 1.76405 1.27400 1.01823 1.33899 0.85014 0.92189 0.93018 0.80025 0.91661 0.85460 0.92062 0.96087 0.92411 0.95447 0.99080 0.93203 0.92381 0.92977 0.95181 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.47 113.37 1.19 1.78 16 2 O -0.30 -7.51 10.54 -92.97 -0.98 -8.49 16 3 C 0.30 8.32 7.42 84.92 0.63 8.95 16 4 C -0.20 -4.92 10.15 21.55 0.22 -4.70 16 5 C -0.14 -3.43 4.52 24.95 0.11 -3.32 16 6 C 0.13 2.90 5.85 85.56 0.50 3.40 16 7 N -0.54 -16.87 4.80 -900.94 -4.32 -21.20 16 8 C 0.06 2.46 4.76 86.32 0.41 2.87 16 9 C -0.09 -4.55 5.12 30.64 0.16 -4.39 16 10 C 0.04 2.14 2.16 -11.46 -0.02 2.12 16 11 C -0.53 -29.47 8.57 25.60 0.22 -29.25 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.65 5.31 84.66 0.45 1.10 16 14 N -0.92 -53.72 11.37 21.45 0.24 -53.48 16 15 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C -0.10 -3.96 5.32 30.65 0.16 -3.80 16 20 C 0.07 2.03 5.42 86.33 0.47 2.50 16 21 S 0.28 7.59 22.15 -56.49 -1.25 6.33 16 22 N -0.55 -16.30 11.14 -176.08 -1.96 -18.26 16 23 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 28 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.06 2.30 5.52 -2.39 -0.01 2.28 16 30 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 3.19 6.17 -2.39 -0.01 3.17 16 32 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 2.39 8.12 -2.39 -0.02 2.37 16 Total: -1.00 -64.56 319.33 -0.71 -65.27 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.04 Total: 6.37 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.49 Total: -22.72 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -6.04 Total: -92.93 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.98 Total: -8.49 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -1.25 Total: 6.33 kcal Total: -64.56 -0.71 -65.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401034220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.314 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds