Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 117.00315 * 2 1 4 4 C 1.38267 * 121.64591 * 179.97438 * 3 2 1 5 5 C 1.35053 * 114.72704 * 179.97438 * 4 3 2 6 6 C 1.50706 * 127.19847 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46577 * 90.00309 * 6 5 4 8 8 C 1.46842 * 111.00276 * 294.21004 * 7 6 5 9 9 C 1.53037 * 109.52367 * 174.16333 * 8 7 6 10 10 C 1.53120 * 109.27865 * 59.17943 * 9 8 7 11 11 C 1.53120 * 109.16082 * 302.34553 * 10 9 8 12 12 H 1.08997 * 109.50175 * 297.71372 * 11 10 9 13 13 C 1.50703 * 109.50362 * 177.59655 * 11 10 9 14 14 H 1.08002 * 119.99823 * 240.19601 * 13 11 10 15 15 C 1.37879 * 119.99862 * 60.19530 * 13 11 10 16 16 N 1.31508 * 120.00048 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99534 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47133 * 90.00461 * 17 15 13 19 19 H 1.48506 * 109.46721 * 210.00146 * 17 15 13 20 20 H 1.48497 * 109.47635 * 329.99759 * 17 15 13 21 21 C 1.46850 * 110.99680 * 170.00071 * 7 6 5 22 22 S 1.72027 * 105.60089 * 0.23043 * 5 4 3 23 23 N 1.30349 * 121.63893 * 359.97438 * 3 2 1 24 24 H 1.09000 * 109.47152 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46803 * 299.99850 * 1 2 3 26 26 H 1.08992 * 109.47343 * 60.00126 * 1 2 3 27 27 H 1.08010 * 122.63366 * 359.96022 * 4 3 2 28 28 H 1.09000 * 109.47318 * 209.99817 * 6 5 4 29 29 H 1.09000 * 109.47161 * 330.00447 * 6 5 4 30 30 H 1.09005 * 109.46184 * 294.17602 * 8 7 6 31 31 H 1.08998 * 109.46697 * 54.14510 * 8 7 6 32 32 H 1.08996 * 109.50638 * 299.23489 * 9 8 7 33 33 H 1.09003 * 109.50162 * 179.11583 * 9 8 7 34 34 H 1.08997 * 109.52404 * 182.44177 * 10 9 8 35 35 H 1.08999 * 109.57857 * 62.28191 * 10 9 8 36 36 H 0.96998 * 119.99940 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46046 * 305.85403 * 21 7 6 38 38 H 1.08998 * 109.46430 * 65.81938 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 3.4243 1.3232 0.0005 5 6 3.8881 2.5916 -0.0001 6 6 5.3285 3.0351 0.0008 7 7 5.7975 3.1781 -1.3840 8 6 5.8270 1.8783 -2.0665 9 6 6.1788 2.0832 -3.5418 10 6 7.5452 2.7663 -3.6455 11 6 7.5017 4.0950 -2.8858 12 1 6.7655 4.7537 -3.3464 13 6 8.8600 4.7463 -2.9330 14 1 9.3923 4.9521 -2.0161 15 6 9.4230 5.0793 -4.1467 16 7 8.7745 4.8290 -5.2631 17 14 11.1062 5.8871 -4.2052 18 1 12.1555 4.8396 -4.2871 19 1 11.1915 6.7675 -5.3981 20 1 11.3097 6.6967 -2.9770 21 6 7.1117 3.8318 -1.4295 22 16 2.4909 3.5951 0.0053 23 7 1.3679 2.3243 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.0785 0.4637 0.0016 28 1 5.4134 3.9930 0.5139 29 1 5.9372 2.2918 0.5157 30 1 6.5771 1.2399 -1.5996 31 1 4.8483 1.4049 -1.9889 32 1 5.4217 2.7101 -4.0127 33 1 6.2160 1.1168 -4.0446 34 1 7.7803 2.9534 -4.6933 35 1 8.3094 2.1226 -3.2101 36 1 9.1708 5.0630 -6.1170 37 1 7.0659 4.7774 -0.8893 38 1 7.8557 3.1843 -0.9656 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401035707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = 2.909694 kcal Electronic energy + Delta-G solvation = -19903.542637 eV Core-core repulsion = 16872.921378 eV Total energy + Delta-G solvation = -3030.621259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17986 -38.46336 -36.71310 -34.10833 -32.25929 -30.82603 -29.77169 -28.21501 -26.38090 -24.95806 -23.18543 -21.94374 -21.31623 -20.07319 -18.63518 -18.06288 -17.30279 -16.46448 -16.23606 -15.24839 -15.00889 -14.66647 -14.43257 -14.15584 -13.48180 -13.37073 -13.20641 -12.75654 -12.40401 -12.33623 -12.06058 -11.85710 -11.54768 -11.19212 -10.96364 -10.90780 -10.72423 -10.70295 -10.65150 -10.14951 -9.87070 -9.56064 -9.48140 -9.08866 -8.73590 -8.32969 -8.28083 -7.81645 -5.98863 -4.05376 0.70399 1.42091 1.78338 2.45454 3.07875 3.30010 3.37195 3.39709 4.33991 4.50463 4.66517 4.97465 5.06421 5.07378 5.15860 5.31395 5.34819 5.51859 5.68031 5.71530 5.73984 5.85171 6.04374 6.13690 6.21363 6.33016 6.45876 6.68346 6.71361 6.90234 7.02430 7.17976 7.33102 7.55076 7.66848 7.75234 8.05306 8.15193 8.44933 8.98547 9.59124 11.07127 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.003604 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.281120 B = 7766.267313 C = 8059.093218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.298 6.298 3 C 0.311 3.689 4 C -0.216 4.216 5 C -0.122 4.122 6 C 0.121 3.879 7 N -0.532 5.532 8 C 0.058 3.942 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.056 3.944 12 H 0.036 0.964 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.068 3.932 22 S 0.309 5.691 23 N -0.544 5.544 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.159 0.841 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 -7.427 10.602 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.205 6.205 3 C 0.098 3.902 4 C -0.252 4.252 5 C -0.251 4.251 6 C -0.009 4.009 7 N -0.257 5.257 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.149 4.149 11 C 0.037 3.963 12 H 0.054 0.946 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.058 4.058 22 S 0.459 5.541 23 N -0.384 5.384 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.177 0.823 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.059 -5.774 10.163 18.283 hybrid contribution 2.282 -1.683 0.276 2.849 sum -11.777 -7.457 10.439 17.415 Atomic orbital electron populations 1.22920 0.77168 1.03232 1.02425 1.86263 1.22629 1.23086 1.88476 1.20067 0.89980 0.84984 0.95201 1.20166 0.92535 0.99013 1.13474 1.25344 1.02985 0.96889 0.99932 1.20536 0.86479 1.01237 0.92623 1.62058 1.29980 1.22376 1.11327 1.22140 0.99349 0.89326 0.96159 1.21667 1.00588 0.99597 0.93587 1.21665 0.92037 0.96664 1.04551 1.18667 0.96147 0.93510 0.87989 0.94627 1.21125 1.02510 1.39417 0.92405 0.92793 1.24931 0.97454 0.95675 0.95751 1.69888 1.37722 1.47568 0.97415 0.86625 0.84589 0.79387 0.77553 1.20805 1.21253 1.19952 1.22372 0.85143 0.96495 1.01815 1.83978 0.89449 1.12314 1.68409 1.76412 1.26986 1.01496 1.33539 0.88328 0.92377 0.92243 0.82308 0.88958 0.92711 0.95610 0.92031 0.92106 0.93456 0.89084 0.95100 0.93024 0.91912 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.47 101.05 1.06 1.41 16 2 O -0.30 -3.74 10.54 -19.57 -0.21 -3.94 16 3 C 0.31 4.28 7.42 -18.17 -0.13 4.15 16 4 C -0.22 -2.84 8.68 -40.70 -0.35 -3.19 16 5 C -0.12 -1.63 5.45 -35.44 -0.19 -1.82 16 6 C 0.12 1.67 5.54 -4.97 -0.03 1.64 16 7 N -0.53 -9.27 4.65 -236.11 -1.10 -10.36 16 8 C 0.06 0.99 5.27 -3.84 -0.02 0.97 16 9 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 10 C -0.11 -2.57 5.03 -26.61 -0.13 -2.70 16 11 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 12 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.52 -13.77 8.56 -34.44 -0.29 -14.06 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -24.98 11.36 55.43 0.63 -24.35 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.07 1.36 4.68 -3.83 -0.02 1.34 16 22 S 0.31 4.09 23.71 -107.50 -2.55 1.54 16 23 N -0.54 -7.74 11.14 28.92 0.32 -7.42 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.09 1.16 7.99 -51.93 -0.41 0.75 16 29 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.98 6.02 -51.93 -0.31 0.66 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -28.66 320.71 -9.32 -37.99 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.65 Total: -2.27 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.58 Total: -11.91 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.15 Total: -42.13 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.21 Total: -3.94 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -2.55 Total: 1.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.66 -9.32 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401035707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.896 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds