Wall clock time and date at job start Tue Mar 31 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35951 * 117.00486 * 2 1 4 4 C 1.38266 * 121.64017 * 180.26546 * 3 2 1 5 5 C 1.35061 * 114.72092 * 180.20433 * 4 3 2 6 6 C 1.50699 * 127.19553 * 179.84371 * 5 4 3 7 7 N 1.46496 * 109.47349 * 89.70518 * 6 5 4 8 8 C 1.36941 * 119.99539 * 269.99679 * 7 6 5 9 9 H 1.08005 * 119.99828 * 141.45891 * 8 7 6 10 10 C 1.38807 * 120.00136 * 321.45093 * 8 7 6 11 11 N 1.31619 * 120.00153 * 339.35061 * 10 8 7 12 12 Si 1.86804 * 119.99952 * 159.34496 * 10 8 7 13 13 H 1.48504 * 109.46973 * 90.00602 * 12 10 8 14 14 H 1.48502 * 109.47243 * 210.00402 * 12 10 8 15 15 H 1.48499 * 109.47023 * 330.00566 * 12 10 8 16 16 C 1.46494 * 120.00106 * 89.99738 * 7 6 5 17 17 C 1.55238 * 110.57855 * 240.10247 * 16 7 6 18 18 C 1.54898 * 102.58739 * 203.34170 * 17 16 7 19 19 C 1.54265 * 104.31319 * 37.92780 * 18 17 16 20 20 C 1.53875 * 106.59952 * 336.32998 * 19 18 17 21 21 S 1.72031 * 105.60027 * 359.57529 * 5 4 3 22 22 N 1.30343 * 121.63734 * 359.97438 * 3 2 1 23 23 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46846 * 300.00043 * 1 2 3 25 25 H 1.09004 * 109.46894 * 59.99741 * 1 2 3 26 26 H 1.07998 * 122.63987 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47160 * 329.69999 * 6 5 4 28 28 H 1.09003 * 109.46949 * 209.70404 * 6 5 4 29 29 H 0.97003 * 120.00150 * 179.97438 * 11 10 8 30 30 H 1.08997 * 110.43511 * 2.68775 * 16 7 6 31 31 H 1.08998 * 110.89612 * 85.05269 * 17 16 7 32 32 H 1.08999 * 110.76721 * 321.57060 * 17 16 7 33 33 H 1.09011 * 110.48278 * 279.18805 * 18 17 16 34 34 H 1.08995 * 110.48943 * 156.68182 * 18 17 16 35 35 H 1.09006 * 110.02435 * 95.61187 * 19 18 17 36 36 H 1.08997 * 110.03367 * 216.98907 * 19 18 17 37 37 H 1.09004 * 110.03386 * 119.28314 * 20 19 18 38 38 H 1.09003 * 110.02902 * 240.66019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4244 1.3230 -0.0055 5 6 3.8883 2.5915 -0.0003 6 6 5.3286 3.0348 -0.0009 7 7 5.7949 3.1782 -1.3822 8 6 6.3617 2.1118 -2.0277 9 1 6.1541 1.9411 -3.0737 10 6 7.2033 1.2502 -1.3375 11 7 7.7813 1.6468 -0.2235 12 14 7.5153 -0.4722 -1.9897 13 1 8.6896 -0.4522 -2.8986 14 1 7.7841 -1.3905 -0.8540 15 1 6.3205 -0.9433 -2.7351 16 6 5.6547 4.4624 -2.0731 17 6 4.7734 4.3064 -3.3414 18 6 5.2244 5.5033 -4.2152 19 6 6.7456 5.5974 -3.9772 20 6 7.0193 4.9356 -2.6153 21 16 2.4910 3.5950 -0.0008 22 7 1.3680 2.3243 -0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0785 0.4637 -0.0104 27 1 5.9378 2.2913 0.5129 28 1 5.4141 3.9924 0.5127 29 1 8.3691 1.0446 0.2589 30 1 5.2301 5.2104 -1.4035 31 1 3.7154 4.3872 -3.0921 32 1 4.9821 3.3616 -3.8432 33 1 4.7302 6.4194 -3.8915 34 1 5.0140 5.3086 -5.2668 35 1 7.2802 5.0661 -4.7647 36 1 7.0561 6.6420 -3.9547 37 1 7.6868 4.0831 -2.7417 38 1 7.4633 5.6588 -1.9312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401058623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:59 Heat of formation + Delta-G solvation = 14.700210 kcal Electronic energy + Delta-G solvation = -20562.316365 eV Core-core repulsion = 17532.206381 eV Total energy + Delta-G solvation = -3030.109984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58722 -37.82736 -36.30488 -34.52107 -31.64427 -30.44857 -27.93578 -27.89382 -26.77913 -25.96729 -23.24523 -21.79409 -19.87906 -19.55421 -19.09365 -17.55288 -16.91278 -16.21628 -15.78661 -15.48763 -14.90552 -14.46957 -14.28025 -13.60715 -13.46618 -12.91029 -12.87676 -12.59564 -12.42131 -11.96087 -11.52441 -11.29852 -11.03657 -10.92548 -10.81295 -10.66323 -10.56656 -10.43869 -10.33187 -10.15627 -10.12521 -9.93386 -9.76861 -9.56574 -8.75436 -8.59713 -7.74206 -6.74723 -5.98179 -3.53291 1.40267 2.05961 2.38798 3.13489 3.28739 3.37445 3.42059 3.60023 4.36359 5.14265 5.21946 5.29485 5.35660 5.36940 5.38520 5.47061 5.67124 5.67860 5.94449 6.09358 6.15409 6.18532 6.23112 6.35282 6.44716 6.50118 6.55720 6.58289 6.66244 6.77009 6.82188 6.99994 7.07360 7.27172 7.35242 7.57392 7.72328 8.36439 8.99471 9.61317 10.18668 11.02755 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.007583 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.683341 B = 3691.744754 C = 5034.049502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.300 6.300 3 C 0.314 3.686 4 C -0.224 4.224 5 C -0.108 4.108 6 C 0.203 3.797 7 N -0.559 5.559 8 C -0.252 4.252 9 H 0.064 0.936 10 C 0.019 3.981 11 N -0.879 5.879 12 Si 0.893 3.107 13 H -0.284 1.284 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.171 3.829 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.130 4.130 21 S 0.227 5.773 22 N -0.557 5.557 23 H 0.094 0.906 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.156 0.844 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.259 0.741 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 3.293 -0.618 8.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.100 3.900 4 C -0.258 4.258 5 C -0.240 4.240 6 C 0.074 3.926 7 N -0.276 5.276 8 C -0.382 4.382 9 H 0.081 0.919 10 C -0.182 4.182 11 N -0.520 5.520 12 Si 0.722 3.278 13 H -0.211 1.211 14 H -0.213 1.213 15 H -0.200 1.200 16 C 0.064 3.936 17 C -0.176 4.176 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.169 4.169 21 S 0.374 5.626 22 N -0.397 5.397 23 H 0.112 0.888 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.174 0.826 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.637 4.524 -0.495 9.763 hybrid contribution 0.877 -2.512 -0.428 2.695 sum -7.760 2.012 -0.923 8.070 Atomic orbital electron populations 1.22834 0.77972 1.02688 1.02078 1.86269 1.22006 1.23719 1.88666 1.20282 0.90325 0.84613 0.94785 1.20127 0.91590 0.99736 1.14358 1.27234 1.04303 0.96034 0.96478 1.19755 0.83338 1.00826 0.88726 1.43820 1.65524 1.07075 1.11151 1.18905 1.20873 1.02908 0.95534 0.91860 1.25199 0.95463 0.99778 0.97807 1.69950 1.28997 1.34915 1.18122 0.86456 0.78426 0.84592 0.78365 1.21081 1.21253 1.20039 1.21388 0.93067 0.87140 0.92043 1.22966 0.98826 0.97929 0.97910 1.22277 0.96152 0.98544 0.99064 1.22069 0.95876 0.99326 0.98540 1.22470 0.99845 1.00258 0.94316 1.83597 0.92238 1.14586 1.72181 1.76340 1.26645 1.01100 1.35569 0.88783 0.92651 0.92635 0.82608 0.86360 0.93284 0.93135 0.92859 0.93000 0.91018 0.92600 0.92914 0.92696 0.93232 0.89606 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.47 101.05 1.06 1.58 16 2 O -0.30 -5.29 10.54 -19.59 -0.21 -5.50 16 3 C 0.31 6.08 7.42 -18.17 -0.13 5.95 16 4 C -0.22 -4.56 10.15 -40.70 -0.41 -4.97 16 5 C -0.11 -2.16 6.17 -35.44 -0.22 -2.38 16 6 C 0.20 4.33 5.85 -5.20 -0.03 4.30 16 7 N -0.56 -12.45 2.44 -164.93 -0.40 -12.85 16 8 C -0.25 -6.22 7.73 -15.06 -0.12 -6.33 16 9 H 0.06 1.61 6.73 -52.48 -0.35 1.25 16 10 C 0.02 0.48 4.96 -17.43 -0.09 0.39 16 11 N -0.88 -22.93 11.49 55.49 0.64 -22.30 16 12 Si 0.89 20.38 29.60 -169.99 -5.03 15.35 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.17 3.32 3.39 -66.08 -0.22 3.10 16 17 C -0.14 -2.48 6.47 -24.54 -0.16 -2.63 16 18 C -0.12 -1.86 6.82 -25.07 -0.17 -2.04 16 19 C -0.12 -1.89 6.80 -25.61 -0.17 -2.06 16 20 C -0.13 -2.44 6.41 -25.61 -0.16 -2.61 16 21 S 0.23 4.07 23.71 -107.50 -2.55 1.52 16 22 N -0.56 -10.59 11.14 28.92 0.32 -10.27 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.16 3.27 8.06 -52.49 -0.42 2.85 16 27 H 0.12 2.84 5.56 -51.93 -0.29 2.55 16 28 H 0.05 0.98 7.92 -51.93 -0.41 0.56 16 29 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 30 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.44 6.63 -51.93 -0.34 1.10 16 33 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.89 6.92 -51.93 -0.36 1.53 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -26.34 324.13 -8.71 -35.04 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.53 Total: 1.81 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.83 Total: -7.70 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.56 Total: -45.42 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.21 Total: -5.50 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.55 Total: 1.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.34 -8.71 -35.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401058623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.744 kcal (2) G-P(sol) polarization free energy of solvation -26.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds