Wall clock time and date at job start Tue Mar 31 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35951 * 117.00486 * 2 1 4 4 C 1.38266 * 121.64017 * 180.26546 * 3 2 1 5 5 C 1.35061 * 114.72092 * 180.20433 * 4 3 2 6 6 C 1.50699 * 127.19553 * 179.84371 * 5 4 3 7 7 N 1.46496 * 109.47349 * 89.70518 * 6 5 4 8 8 C 1.36941 * 119.99539 * 269.99679 * 7 6 5 9 9 H 1.08005 * 119.99828 * 141.45891 * 8 7 6 10 10 C 1.38807 * 120.00136 * 321.45093 * 8 7 6 11 11 N 1.31619 * 120.00153 * 339.35061 * 10 8 7 12 12 Si 1.86804 * 119.99952 * 159.34496 * 10 8 7 13 13 H 1.48504 * 109.46973 * 90.00602 * 12 10 8 14 14 H 1.48502 * 109.47243 * 210.00402 * 12 10 8 15 15 H 1.48499 * 109.47023 * 330.00566 * 12 10 8 16 16 C 1.46494 * 120.00106 * 89.99738 * 7 6 5 17 17 C 1.55238 * 110.57855 * 240.10247 * 16 7 6 18 18 C 1.54898 * 102.58739 * 203.34170 * 17 16 7 19 19 C 1.54265 * 104.31319 * 37.92780 * 18 17 16 20 20 C 1.53875 * 106.59952 * 336.32998 * 19 18 17 21 21 S 1.72031 * 105.60027 * 359.57529 * 5 4 3 22 22 N 1.30343 * 121.63734 * 359.97438 * 3 2 1 23 23 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46846 * 300.00043 * 1 2 3 25 25 H 1.09004 * 109.46894 * 59.99741 * 1 2 3 26 26 H 1.07998 * 122.63987 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47160 * 329.69999 * 6 5 4 28 28 H 1.09003 * 109.46949 * 209.70404 * 6 5 4 29 29 H 0.97003 * 120.00150 * 179.97438 * 11 10 8 30 30 H 1.08997 * 110.43511 * 2.68775 * 16 7 6 31 31 H 1.08998 * 110.89612 * 85.05269 * 17 16 7 32 32 H 1.08999 * 110.76721 * 321.57060 * 17 16 7 33 33 H 1.09011 * 110.48278 * 279.18805 * 18 17 16 34 34 H 1.08995 * 110.48943 * 156.68182 * 18 17 16 35 35 H 1.09006 * 110.02435 * 95.61187 * 19 18 17 36 36 H 1.08997 * 110.03367 * 216.98907 * 19 18 17 37 37 H 1.09004 * 110.03386 * 119.28314 * 20 19 18 38 38 H 1.09003 * 110.02902 * 240.66019 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4244 1.3230 -0.0055 5 6 3.8883 2.5915 -0.0003 6 6 5.3286 3.0348 -0.0009 7 7 5.7949 3.1782 -1.3822 8 6 6.3617 2.1118 -2.0277 9 1 6.1541 1.9411 -3.0737 10 6 7.2033 1.2502 -1.3375 11 7 7.7813 1.6468 -0.2235 12 14 7.5153 -0.4722 -1.9897 13 1 8.6896 -0.4522 -2.8986 14 1 7.7841 -1.3905 -0.8540 15 1 6.3205 -0.9433 -2.7351 16 6 5.6547 4.4624 -2.0731 17 6 4.7734 4.3064 -3.3414 18 6 5.2244 5.5033 -4.2152 19 6 6.7456 5.5974 -3.9772 20 6 7.0193 4.9356 -2.6153 21 16 2.4910 3.5950 -0.0008 22 7 1.3680 2.3243 -0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.0785 0.4637 -0.0104 27 1 5.9378 2.2913 0.5129 28 1 5.4141 3.9924 0.5127 29 1 8.3691 1.0446 0.2589 30 1 5.2301 5.2104 -1.4035 31 1 3.7154 4.3872 -3.0921 32 1 4.9821 3.3616 -3.8432 33 1 4.7302 6.4194 -3.8915 34 1 5.0140 5.3086 -5.2668 35 1 7.2802 5.0661 -4.7647 36 1 7.0561 6.6420 -3.9547 37 1 7.6868 4.0831 -2.7417 38 1 7.4633 5.6588 -1.9312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401058623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:59 Heat of formation + Delta-G solvation = 0.041488 kcal Electronic energy + Delta-G solvation = -20562.952015 eV Core-core repulsion = 17532.206381 eV Total energy + Delta-G solvation = -3030.745634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01812 -39.35347 -37.74873 -36.13733 -33.43810 -32.05242 -29.31728 -29.23662 -28.20620 -27.66340 -24.86181 -23.35066 -21.30220 -21.08324 -20.64811 -19.04165 -18.44639 -17.88512 -17.15833 -17.07593 -16.50728 -15.96333 -15.73544 -15.21431 -15.06007 -14.41201 -14.31739 -14.04151 -13.95645 -13.42233 -13.07225 -12.85430 -12.75451 -12.63347 -12.35764 -12.11635 -12.02373 -11.87874 -11.81575 -11.73993 -11.64419 -11.56807 -11.21947 -11.07790 -10.50705 -10.31693 -9.19023 -8.56576 -7.87223 -5.45634 -0.15562 0.56651 0.85889 1.42692 1.48875 1.55679 1.58156 2.28140 2.49619 3.24212 3.61990 3.90121 4.02524 4.06581 4.26359 4.31760 4.34025 4.37602 4.52633 4.64052 4.66994 4.79411 4.88078 4.94101 4.95323 5.01354 5.11985 5.22143 5.24432 5.29098 5.36006 5.51092 5.56061 5.66380 5.69673 5.81558 6.17206 6.48695 7.14295 7.80878 8.33568 9.10331 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.007583 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.683341 B = 3691.744754 C = 5034.049502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.311 3.689 4 C -0.236 4.236 5 C -0.120 4.120 6 C 0.207 3.793 7 N -0.571 5.571 8 C -0.247 4.247 9 H 0.051 0.949 10 C -0.019 4.019 11 N -0.904 5.904 12 Si 0.938 3.062 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.279 1.279 16 C 0.162 3.838 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.127 4.127 21 S 0.283 5.717 22 N -0.562 5.562 23 H 0.129 0.871 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.141 0.859 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.254 0.746 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.182 4.539 -1.244 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.219 6.219 3 C 0.097 3.903 4 C -0.271 4.271 5 C -0.252 4.252 6 C 0.078 3.922 7 N -0.288 5.288 8 C -0.378 4.378 9 H 0.069 0.931 10 C -0.217 4.217 11 N -0.547 5.547 12 Si 0.767 3.233 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.204 1.204 16 C 0.056 3.944 17 C -0.172 4.172 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.166 4.166 21 S 0.431 5.569 22 N -0.402 5.402 23 H 0.147 0.853 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.159 0.841 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.359 5.775 -1.133 11.914 hybrid contribution 1.276 -2.861 -0.199 3.139 sum -9.083 2.914 -1.333 9.632 Atomic orbital electron populations 1.23165 0.75527 1.05161 1.02222 1.86263 1.24440 1.22872 1.88353 1.20171 0.89979 0.85332 0.94770 1.20165 0.92347 0.99592 1.15043 1.27008 1.04698 0.96820 0.96668 1.19522 0.83809 1.00590 0.88240 1.43925 1.66010 1.07657 1.11235 1.18885 1.20296 1.03520 0.95109 0.93119 1.25622 0.95933 1.01871 0.98303 1.70033 1.30143 1.35388 1.19127 0.85749 0.77870 0.82115 0.77567 1.21142 1.21582 1.20411 1.21609 0.93844 0.86228 0.92707 1.22857 0.98671 0.98114 0.97513 1.22251 0.95485 0.97952 0.99370 1.22027 0.96483 1.00399 0.96275 1.22386 0.98681 0.99087 0.96494 1.83329 0.89939 1.12901 1.70765 1.76284 1.27076 1.01363 1.35516 0.85266 0.92214 0.92673 0.84088 0.89191 0.91982 0.93628 0.91512 0.92677 0.93693 0.90366 0.91442 0.92917 0.90696 0.93517 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.47 113.37 1.19 2.00 16 2 O -0.31 -10.66 10.54 -93.00 -0.98 -11.63 16 3 C 0.31 11.77 7.42 84.92 0.63 12.40 16 4 C -0.24 -9.68 10.15 21.54 0.22 -9.46 16 5 C -0.12 -4.74 6.17 24.95 0.15 -4.58 16 6 C 0.21 8.94 5.85 85.63 0.50 9.45 16 7 N -0.57 -25.67 2.44 -675.73 -1.65 -27.32 16 8 C -0.25 -12.51 7.73 84.03 0.65 -11.86 16 9 H 0.05 2.66 6.73 -2.91 -0.02 2.64 16 10 C -0.02 -0.96 4.96 84.86 0.42 -0.54 16 11 N -0.90 -48.69 11.49 21.65 0.25 -48.44 16 12 Si 0.94 43.03 29.60 68.60 2.03 45.06 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 C 0.16 6.18 3.39 46.19 0.16 6.34 16 17 C -0.13 -4.59 6.47 32.01 0.21 -4.39 16 18 C -0.11 -3.09 6.82 31.67 0.22 -2.87 16 19 C -0.11 -3.33 6.80 31.32 0.21 -3.11 16 20 C -0.13 -4.72 6.41 31.32 0.20 -4.52 16 21 S 0.28 9.59 23.71 -56.49 -1.34 8.25 16 22 N -0.56 -20.33 11.14 -176.09 -1.96 -22.29 16 23 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.14 6.13 8.06 -2.91 -0.02 6.10 16 27 H 0.09 4.47 5.56 -2.39 -0.01 4.45 16 28 H 0.06 2.45 7.92 -2.39 -0.02 2.43 16 29 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.07 2.35 7.84 -2.39 -0.02 2.33 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.79 6.63 -2.39 -0.02 1.78 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 2.09 6.92 -2.38 -0.02 2.08 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -56.90 324.13 2.15 -54.75 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.05 Total: 12.77 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.76 Total: -11.14 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -3.36 Total: -98.05 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.98 Total: -11.63 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 9.59 SS G_CDS: -1.34 Total: 8.25 kcal Total: -56.90 2.15 -54.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401058623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.792 kcal (2) G-P(sol) polarization free energy of solvation -56.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds