Wall clock time and date at job start Tue Mar 31 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47094 * 2 1 4 4 C 1.46496 * 120.00294 * 269.99890 * 3 2 1 5 5 C 1.50701 * 109.47098 * 270.00148 * 4 3 2 6 6 H 1.07994 * 120.00152 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00181 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47140 * 90.00260 * 9 7 5 11 11 H 1.48506 * 109.47118 * 210.00003 * 9 7 5 12 12 H 1.48503 * 109.47170 * 329.99925 * 9 7 5 13 13 C 1.34776 * 120.00221 * 89.99908 * 3 2 1 14 14 O 1.21286 * 120.00454 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99741 * 359.97438 * 13 3 2 16 16 C 1.53007 * 109.47143 * 180.02562 * 15 13 3 17 17 C 1.50700 * 109.47143 * 179.97438 * 16 15 13 18 18 S 1.76194 * 126.04025 * 269.97719 * 17 16 15 19 19 C 1.70968 * 90.28454 * 180.02562 * 18 17 16 20 20 N 1.29025 * 110.17021 * 359.97438 * 19 18 17 21 21 C 1.31784 * 117.12258 * 359.97438 * 20 19 18 22 22 C 1.50700 * 122.74936 * 179.72958 * 21 20 19 23 23 H 1.09004 * 109.46893 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47116 * 299.99897 * 1 2 3 25 25 H 1.09000 * 109.47090 * 60.00467 * 1 2 3 26 26 H 1.09001 * 109.47551 * 239.99860 * 2 1 3 27 27 H 1.09000 * 109.47090 * 119.99533 * 2 1 3 28 28 H 1.09000 * 109.47039 * 29.99342 * 4 3 2 29 29 H 1.08992 * 109.47951 * 149.99826 * 4 3 2 30 30 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47521 * 60.00718 * 15 13 3 32 32 H 1.08999 * 109.47590 * 299.99793 * 15 13 3 33 33 H 1.09000 * 109.47059 * 60.00278 * 16 15 13 34 34 H 1.08999 * 109.47336 * 300.00048 * 16 15 13 35 35 H 1.08008 * 124.91782 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47218 * 90.03005 * 22 21 20 37 37 H 1.09007 * 109.46702 * 210.02827 * 22 21 20 38 38 H 1.08999 * 109.46968 * 330.02330 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3489 3.1250 -3.6185 9 14 5.9136 2.0967 -3.4167 10 1 5.9776 0.8754 -4.2591 11 1 6.3922 3.2640 -4.2002 12 1 6.7736 1.9180 -2.2193 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3221 2.2440 3.6352 17 6 2.0698 1.5340 4.9403 18 16 0.5533 1.5214 5.8373 19 6 1.2628 0.5347 7.0398 20 7 2.4922 0.2827 6.7401 21 6 2.9565 0.8019 5.6213 22 6 4.3736 0.5940 5.1526 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1385 30 1 3.6750 3.5155 -4.4444 31 1 2.6211 0.4187 2.5303 32 1 0.9431 1.0126 2.5299 33 1 1.6919 3.1314 3.5771 34 1 3.3701 2.5381 3.5779 35 1 0.7554 0.1744 7.9226 36 1 4.4223 -0.2973 4.5271 37 1 4.6962 1.4608 4.5757 38 1 5.0271 0.4684 6.0159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412184188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:08 Heat of formation + Delta-G solvation = -7.159254 kcal Electronic energy + Delta-G solvation = -19796.802367 eV Core-core repulsion = 16765.744485 eV Total energy + Delta-G solvation = -3031.057882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06027 -39.07918 -35.40293 -34.26552 -32.78342 -31.01456 -30.08320 -28.19013 -26.72040 -25.06696 -23.68147 -23.00629 -21.92039 -18.90586 -18.28391 -18.20988 -16.58028 -16.34793 -15.70961 -15.51052 -14.91236 -14.76955 -14.23513 -13.78075 -13.54401 -13.38824 -13.04208 -12.68318 -12.57372 -12.49907 -12.27223 -11.99766 -11.88733 -11.62411 -11.42488 -11.17928 -10.92953 -10.86032 -10.64799 -10.51028 -10.13385 -9.77539 -9.63865 -9.39905 -8.96513 -8.73396 -8.43919 -7.67137 -6.04716 -4.09420 0.59271 1.24734 1.63604 2.66670 3.29575 3.35965 3.38443 3.43908 3.91133 4.11071 4.44161 4.75487 4.95515 5.01853 5.15356 5.25091 5.28075 5.30338 5.39353 5.55668 5.57242 5.65881 5.70423 5.76659 5.80512 6.03322 6.05954 6.11480 6.22529 6.28810 6.48042 7.06439 7.44364 7.54568 7.59315 7.91761 8.23391 8.42031 8.89614 9.08444 9.55761 11.03362 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.003966 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.214176 B = 7057.537356 C = 7600.733848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.543 6.543 15 C -0.134 4.134 16 C -0.028 4.028 17 C -0.204 4.204 18 S 0.113 5.887 19 C 0.010 3.990 20 N -0.467 5.467 21 C 0.055 3.945 22 C -0.081 4.081 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.197 0.803 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -7.348 17.395 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.421 6.421 15 C -0.175 4.175 16 C -0.068 4.068 17 C -0.325 4.325 18 S 0.366 5.634 19 C -0.288 4.288 20 N -0.180 5.180 21 C -0.076 4.076 22 C -0.140 4.140 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.035 -6.549 17.471 19.940 hybrid contribution 1.592 -0.472 -0.556 1.751 sum -5.443 -7.020 16.915 19.106 Atomic orbital electron populations 1.22219 0.96837 1.01398 1.02292 1.21413 0.93485 0.84249 1.02660 1.48256 1.63555 1.13223 1.07784 1.19264 0.96246 0.93638 0.78186 1.21436 0.96936 1.31881 1.06226 0.92479 1.24936 0.97843 0.94920 0.96409 1.69931 1.35688 1.33470 1.14305 0.86507 0.84704 0.77672 0.78599 1.20659 1.21091 1.19882 1.20236 0.78553 0.86927 0.85098 1.90673 1.46030 1.18109 1.87292 1.21720 1.03267 0.99673 0.92847 1.19828 1.04304 0.96711 0.85936 1.25855 0.95622 1.07282 1.03766 1.84059 1.15036 1.47879 1.16400 1.28213 0.93916 1.02471 1.04182 1.66178 1.12375 1.22579 1.16897 1.20259 0.98692 0.97706 0.90974 1.20404 0.88983 1.03086 1.01518 0.92203 0.93096 0.92032 0.89984 0.91738 0.95084 0.93907 0.92731 0.89247 0.89567 0.89759 0.88628 0.78665 0.90533 0.90214 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.31 2.46 -175.07 -0.43 -12.74 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.51 10.11 7.67 -10.99 -0.08 10.03 16 14 O -0.54 -13.21 15.56 5.55 0.09 -13.12 16 15 C -0.13 -1.91 4.23 -27.88 -0.12 -2.03 16 16 C -0.03 -0.37 4.72 -27.88 -0.13 -0.51 16 17 C -0.20 -2.48 5.84 -35.92 -0.21 -2.69 16 18 S 0.11 1.12 23.22 -107.50 -2.50 -1.38 16 19 C 0.01 0.10 12.23 51.58 0.63 0.73 16 20 N -0.47 -5.80 10.53 -11.90 -0.13 -5.93 16 21 C 0.05 0.68 6.74 -84.22 -0.57 0.11 16 22 C -0.08 -0.88 10.06 36.01 0.36 -0.51 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 32 H 0.09 1.08 7.18 -51.93 -0.37 0.71 16 33 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.10 1.36 6.71 -51.93 -0.35 1.01 16 35 H 0.20 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.85 6.71 -51.92 -0.35 0.50 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -33.29 333.67 -7.90 -41.19 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.47 Total: -1.78 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.21 Total: -2.23 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.18 Total: -44.44 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.29 -7.90 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412184188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.032 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds