Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47094 * 2 1 4 4 C 1.46496 * 120.00294 * 269.99890 * 3 2 1 5 5 C 1.50701 * 109.47098 * 270.00148 * 4 3 2 6 6 H 1.07994 * 120.00152 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00181 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47140 * 90.00260 * 9 7 5 11 11 H 1.48506 * 109.47118 * 210.00003 * 9 7 5 12 12 H 1.48503 * 109.47170 * 329.99925 * 9 7 5 13 13 C 1.34776 * 120.00221 * 89.99908 * 3 2 1 14 14 O 1.21286 * 120.00454 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99741 * 359.97438 * 13 3 2 16 16 C 1.53007 * 109.47143 * 180.02562 * 15 13 3 17 17 C 1.50700 * 109.47143 * 179.97438 * 16 15 13 18 18 S 1.76194 * 126.04025 * 269.97719 * 17 16 15 19 19 C 1.70968 * 90.28454 * 180.02562 * 18 17 16 20 20 N 1.29025 * 110.17021 * 359.97438 * 19 18 17 21 21 C 1.31784 * 117.12258 * 359.97438 * 20 19 18 22 22 C 1.50700 * 122.74936 * 179.72958 * 21 20 19 23 23 H 1.09004 * 109.46893 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47116 * 299.99897 * 1 2 3 25 25 H 1.09000 * 109.47090 * 60.00467 * 1 2 3 26 26 H 1.09001 * 109.47551 * 239.99860 * 2 1 3 27 27 H 1.09000 * 109.47090 * 119.99533 * 2 1 3 28 28 H 1.09000 * 109.47039 * 29.99342 * 4 3 2 29 29 H 1.08992 * 109.47951 * 149.99826 * 4 3 2 30 30 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47521 * 60.00718 * 15 13 3 32 32 H 1.08999 * 109.47590 * 299.99793 * 15 13 3 33 33 H 1.09000 * 109.47059 * 60.00278 * 16 15 13 34 34 H 1.08999 * 109.47336 * 300.00048 * 16 15 13 35 35 H 1.08008 * 124.91782 * 179.97438 * 19 18 17 36 36 H 1.08994 * 109.47218 * 90.03005 * 22 21 20 37 37 H 1.09007 * 109.46702 * 210.02827 * 22 21 20 38 38 H 1.08999 * 109.46968 * 330.02330 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3489 3.1250 -3.6185 9 14 5.9136 2.0967 -3.4167 10 1 5.9776 0.8754 -4.2591 11 1 6.3922 3.2640 -4.2002 12 1 6.7736 1.9180 -2.2193 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3221 2.2440 3.6352 17 6 2.0698 1.5340 4.9403 18 16 0.5533 1.5214 5.8373 19 6 1.2628 0.5347 7.0398 20 7 2.4922 0.2827 6.7401 21 6 2.9565 0.8019 5.6213 22 6 4.3736 0.5940 5.1526 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1385 30 1 3.6750 3.5155 -4.4444 31 1 2.6211 0.4187 2.5303 32 1 0.9431 1.0126 2.5299 33 1 1.6919 3.1314 3.5771 34 1 3.3701 2.5381 3.5779 35 1 0.7554 0.1744 7.9226 36 1 4.4223 -0.2973 4.5271 37 1 4.6962 1.4608 4.5757 38 1 5.0271 0.4684 6.0159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412184188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = -28.194790 kcal Electronic energy + Delta-G solvation = -19797.714536 eV Core-core repulsion = 16765.744485 eV Total energy + Delta-G solvation = -3031.970051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04490 -40.54954 -37.01656 -35.43738 -34.80623 -32.07143 -31.51562 -29.59977 -28.21693 -26.06426 -25.12286 -24.37433 -23.37850 -19.83535 -19.78572 -19.06376 -18.60405 -17.85758 -17.21405 -16.76007 -16.31039 -15.99786 -15.70494 -15.02400 -14.71584 -14.49852 -14.44164 -13.99677 -13.77611 -13.50094 -13.44359 -13.38152 -13.25077 -13.04908 -12.98736 -12.65320 -12.49747 -12.38931 -12.15281 -11.93210 -11.72859 -11.69414 -10.67490 -10.63574 -10.56565 -10.16055 -9.63638 -9.42839 -8.21748 -6.36564 -0.22991 0.44664 0.82927 1.36928 1.39834 1.50118 1.81044 1.84675 2.31701 2.46581 3.07807 3.34877 3.59110 3.93533 4.01814 4.10079 4.21213 4.28648 4.37655 4.43977 4.57665 4.62629 4.72784 4.75672 4.93132 4.96562 4.99622 5.04497 5.07922 5.08038 5.24005 5.38597 5.39643 5.59072 5.86928 6.07552 6.70912 6.77642 6.81784 7.29152 7.49657 8.85301 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.003966 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.214176 B = 7057.537356 C = 7600.733848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.497 3.503 14 O -0.597 6.597 15 C -0.116 4.116 16 C -0.019 4.019 17 C -0.228 4.228 18 S 0.146 5.854 19 C 0.022 3.978 20 N -0.497 5.497 21 C 0.051 3.949 22 C -0.083 4.083 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.020 0.980 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -9.529 19.096 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.334 5.334 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.286 3.714 14 O -0.479 6.479 15 C -0.156 4.156 16 C -0.060 4.060 17 C -0.349 4.349 18 S 0.400 5.600 19 C -0.275 4.275 20 N -0.212 5.212 21 C -0.081 4.081 22 C -0.142 4.142 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.359 -8.775 19.186 22.344 hybrid contribution 1.597 0.212 -1.014 1.904 sum -5.761 -8.563 18.172 20.898 Atomic orbital electron populations 1.22155 0.94630 1.03476 1.01695 1.21740 0.95287 0.81400 1.03867 1.48293 1.63733 1.15065 1.06302 1.18692 0.95260 0.91518 0.80524 1.21723 0.97896 1.31963 1.06505 0.92761 1.25863 1.02390 0.94469 0.96451 1.70054 1.37796 1.34274 1.14776 0.85419 0.79024 0.78147 0.78245 1.18858 1.20721 1.19638 1.21268 0.77068 0.86499 0.86575 1.90642 1.48325 1.20705 1.88189 1.21650 1.05197 0.99551 0.89201 1.19608 1.03251 0.96349 0.86743 1.25640 0.97345 1.08277 1.03676 1.83956 1.13169 1.47279 1.15592 1.28883 0.93221 1.00751 1.04664 1.66246 1.13689 1.23977 1.17246 1.20451 0.99109 0.97441 0.91066 1.20440 0.88770 1.03196 1.01780 0.88703 0.92058 0.94300 0.91062 0.88218 0.96186 0.98561 0.92445 0.87169 0.86963 0.90919 0.90108 0.75194 0.89809 0.90642 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.24 71.98 0.74 -3.18 16 2 C 0.10 2.97 5.93 86.38 0.51 3.48 16 3 N -0.60 -25.23 2.46 -826.18 -2.03 -27.25 16 4 C 0.26 14.16 5.16 85.63 0.44 14.60 16 5 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 9 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.50 20.11 7.67 87.66 0.67 20.78 16 14 O -0.60 -30.37 15.56 -3.05 -0.05 -30.41 16 15 C -0.12 -3.12 4.23 29.85 0.13 -2.99 16 16 C -0.02 -0.51 4.72 29.85 0.14 -0.37 16 17 C -0.23 -5.16 5.84 24.64 0.14 -5.01 16 18 S 0.15 2.49 23.22 -56.49 -1.31 1.18 16 19 C 0.02 0.36 12.23 130.65 1.60 1.96 16 20 N -0.50 -11.17 10.53 -191.55 -2.02 -13.19 16 21 C 0.05 1.17 6.74 41.52 0.28 1.45 16 22 C -0.08 -1.71 10.06 71.24 0.72 -0.99 16 23 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 27 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 28 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 29 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.11 2.55 7.40 -2.39 -0.02 2.53 16 32 H 0.11 2.47 7.18 -2.39 -0.02 2.45 16 33 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 34 H 0.08 2.36 6.71 -2.39 -0.02 2.34 16 35 H 0.23 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.59 6.71 -2.38 -0.02 1.58 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.30 333.67 4.03 -71.27 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.05 Total: 8.13 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 6.07 Total: -0.47 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.76 Total: -96.65 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.05 Total: -30.41 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.31 Total: 1.18 kcal Total: -75.30 4.03 -71.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412184188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.073 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds