Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47344 * 2 1 4 4 C 1.50707 * 109.46797 * 120.00206 * 2 1 3 5 5 N 1.32139 * 119.90778 * 299.99281 * 4 2 1 6 6 C 1.33166 * 120.07958 * 180.02562 * 5 4 2 7 7 S 1.76196 * 120.04821 * 180.02562 * 6 5 4 8 8 C 1.81003 * 99.99843 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46851 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72035 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99350 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 89.99430 * 13 11 9 15 15 H 1.48494 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.46680 * 329.99678 * 13 11 9 17 17 N 1.32944 * 119.89869 * 0.28505 * 6 5 4 18 18 C 1.32815 * 119.81593 * 359.44246 * 17 6 5 19 19 N 1.38000 * 120.04001 * 180.27470 * 18 17 6 20 20 C 1.46499 * 120.00286 * 180.28180 * 19 18 17 21 21 C 1.46504 * 120.00238 * 0.27815 * 19 18 17 22 22 N 1.32159 * 119.90819 * 120.02539 * 4 2 1 23 23 H 1.08997 * 109.47226 * 299.99550 * 1 2 3 24 24 H 1.08999 * 109.47418 * 60.00205 * 1 2 3 25 25 H 1.09001 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47011 * 239.99720 * 2 1 3 27 27 H 1.09001 * 109.47295 * 59.99894 * 3 2 1 28 28 H 1.09004 * 109.47356 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47148 * 299.99953 * 3 2 1 30 30 H 1.09000 * 109.47363 * 60.00062 * 8 7 6 31 31 H 1.09001 * 109.47208 * 299.99509 * 8 7 6 32 32 H 0.97005 * 119.99656 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.47674 * 89.99585 * 20 19 18 34 34 H 1.09001 * 109.47257 * 210.00310 * 20 19 18 35 35 H 1.09008 * 109.46723 * 329.99608 * 20 19 18 36 36 H 1.09001 * 109.47128 * 89.99579 * 21 19 18 37 37 H 1.08995 * 109.47250 * 210.00114 * 21 19 18 38 38 H 1.09005 * 109.46627 * 330.00357 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7120 -0.2574 2.4298 6 6 2.1544 -0.8823 3.5194 7 16 1.7262 -0.2778 5.1181 8 6 2.5851 -1.4895 6.1526 9 6 2.3535 -1.1635 7.6056 10 1 1.7528 -0.3084 7.8781 11 6 2.9131 -1.9539 8.5870 12 7 2.7113 -1.6691 9.8550 13 14 3.9587 -3.4284 8.1158 14 1 5.3779 -3.0094 7.9918 15 1 3.8409 -4.4738 9.1638 16 1 3.4883 -3.9739 6.8172 17 7 2.9237 -1.9598 3.3990 18 6 3.2386 -2.4148 2.1917 19 7 4.0323 -3.5363 2.0614 20 6 4.3842 -4.0339 0.7292 21 6 4.5229 -4.2292 3.2553 22 7 2.7923 -1.7846 1.1071 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 3.6534 -1.4578 5.9385 31 1 2.2011 -2.4870 5.9388 32 1 3.1053 -2.2249 10.5456 33 1 5.3103 -3.5637 0.3986 34 1 4.5196 -5.1147 0.7692 35 1 3.5844 -3.7936 0.0286 36 1 3.8057 -4.9946 3.5517 37 1 5.4829 -4.6962 3.0356 38 1 4.6451 -3.5120 4.0671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413478471.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = 60.801445 kcal Electronic energy + Delta-G solvation = -19947.756695 eV Core-core repulsion = 16951.938562 eV Total energy + Delta-G solvation = -2995.818134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23059 -37.36058 -35.66654 -33.15672 -32.95007 -32.11210 -29.44501 -28.28965 -27.21243 -26.34624 -24.85358 -23.35608 -22.30309 -20.40802 -18.48996 -17.83156 -16.85592 -16.04075 -15.92017 -15.10164 -14.63117 -14.48737 -14.21341 -14.12469 -13.87482 -13.46787 -13.25382 -12.74970 -12.66001 -12.49153 -12.41358 -12.20615 -12.05624 -11.65067 -11.41046 -11.17929 -11.02815 -10.94071 -10.80506 -10.44462 -10.23849 -9.92038 -9.45904 -9.17308 -9.14608 -8.77426 -8.23496 -7.25110 -6.25001 -4.29323 1.14997 1.44039 1.85412 2.59619 3.15619 3.21718 3.30231 3.31508 3.93418 4.05337 4.27522 4.40686 4.71594 4.97419 5.05158 5.07330 5.07880 5.22508 5.26180 5.34631 5.58382 5.59221 5.63621 5.70979 5.81161 5.81277 5.88491 6.17455 6.18471 6.30919 6.44859 6.64856 6.68893 6.83649 7.24496 7.33658 7.34660 8.18441 8.60469 8.73135 9.30337 10.86400 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.005665 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.856379 B = 4941.043984 C = 6318.236820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 C -0.139 4.139 4 C 0.406 3.594 5 N -0.577 5.577 6 C 0.370 3.630 7 S 0.029 5.971 8 C 0.023 3.977 9 C -0.526 4.526 10 H 0.085 0.915 11 C 0.086 3.914 12 N -0.888 5.888 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.259 1.259 17 N -0.608 5.608 18 C 0.603 3.397 19 N -0.584 5.584 20 C 0.104 3.896 21 C 0.098 3.902 22 N -0.622 5.622 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -2.197 -20.179 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.198 4.198 4 C 0.126 3.874 5 N -0.306 5.306 6 C -0.012 4.012 7 S 0.264 5.736 8 C -0.126 4.126 9 C -0.565 4.565 10 H 0.103 0.897 11 C -0.120 4.120 12 N -0.524 5.524 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.184 1.184 17 N -0.342 5.342 18 C 0.237 3.763 19 N -0.302 5.302 20 C -0.039 4.039 21 C -0.045 4.045 22 N -0.355 5.355 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.004 -1.496 -19.574 19.657 hybrid contribution 1.502 -2.076 -0.414 2.596 sum 2.506 -3.573 -19.988 20.459 Atomic orbital electron populations 1.21775 0.92835 1.02144 1.03014 1.19954 0.96684 0.95798 0.91864 1.21774 1.00908 0.94075 1.03010 1.23204 0.85014 0.86051 0.93148 1.68984 1.29299 1.34345 0.97962 1.25911 0.87353 0.87405 1.00533 1.86004 1.62188 1.38603 0.86779 1.21711 0.98136 0.95489 0.97261 1.20440 1.34750 1.15242 0.86062 0.89747 1.24791 0.95499 0.97206 0.94480 1.69860 1.44010 1.39166 0.99414 0.86819 0.81184 0.82769 0.79065 1.19807 1.20872 1.18371 1.69094 1.22406 1.17595 1.25068 1.19303 0.85647 0.86208 0.85181 1.45849 1.50934 1.25558 1.07872 1.21626 1.01215 0.98409 0.82696 1.21723 0.98368 0.97402 0.87019 1.68346 1.20800 1.13766 1.32596 0.91004 0.91634 0.92918 0.88792 0.91003 0.92917 0.91641 0.93614 0.93067 0.92085 0.92996 0.91287 0.90089 0.92661 0.91124 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.10 37.16 0.34 -1.15 16 2 C -0.02 -0.27 3.28 -91.77 -0.30 -0.57 16 3 C -0.14 -1.49 9.10 37.15 0.34 -1.16 16 4 C 0.41 6.69 6.36 -156.58 -1.00 5.69 16 5 N -0.58 -10.81 9.99 -10.93 -0.11 -10.92 16 6 C 0.37 7.62 7.90 -89.97 -0.71 6.91 16 7 S 0.03 0.63 22.19 -107.50 -2.39 -1.76 16 8 C 0.02 0.55 3.67 36.01 0.13 0.68 16 9 C -0.53 -14.57 9.68 -34.44 -0.33 -14.90 16 10 H 0.08 2.52 7.95 -52.49 -0.42 2.10 16 11 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 12 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 13 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 17 N -0.61 -12.40 8.06 -14.16 -0.11 -12.51 16 18 C 0.60 10.89 8.19 -322.15 -2.64 8.25 16 19 N -0.58 -8.60 3.36 -191.74 -0.64 -9.24 16 20 C 0.10 1.09 10.45 59.85 0.63 1.72 16 21 C 0.10 1.32 10.46 59.85 0.63 1.94 16 22 N -0.62 -10.56 9.16 -11.52 -0.11 -10.66 16 23 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 1.01 8.11 -51.93 -0.42 0.58 16 27 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.11 7.55 -51.92 -0.39 0.71 16 31 H 0.05 1.25 7.19 -51.92 -0.37 0.88 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.08 0.90 7.37 -51.92 -0.38 0.51 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -31.34 333.53 -10.99 -42.33 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.75 Total: -2.48 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -3.02 Total: 9.73 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.20 Total: -68.78 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.39 Total: -1.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.34 -10.99 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413478471.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.129 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds