Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00160 * 2 1 4 4 C 1.50703 * 109.47157 * 293.95649 * 3 2 1 5 5 H 1.07999 * 119.99945 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99793 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00318 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99685 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46934 * 89.99768 * 8 6 4 10 10 H 1.48499 * 109.47029 * 209.99848 * 8 6 4 11 11 H 1.48501 * 109.47112 * 329.99960 * 8 6 4 12 12 C 1.46900 * 111.00189 * 123.95407 * 2 1 3 13 13 C 1.52996 * 109.47417 * 164.00922 * 12 2 1 14 14 H 1.09004 * 109.47297 * 58.51442 * 13 12 2 15 15 O 1.42896 * 109.47249 * 298.51230 * 13 12 2 16 16 C 1.53007 * 109.47112 * 178.50865 * 13 12 2 17 17 S 1.81408 * 109.46931 * 185.00181 * 16 13 12 18 18 C 1.76200 * 102.99838 * 180.02562 * 17 16 13 19 19 C 1.39192 * 119.71015 * 179.97438 * 18 17 16 20 20 C 1.38277 * 119.09341 * 179.76486 * 19 18 17 21 21 C 1.38911 * 118.50638 * 0.51804 * 20 19 18 22 22 C 1.38023 * 119.34480 * 359.45903 * 21 20 19 23 23 N 1.31963 * 120.85883 * 0.29481 * 22 21 20 24 24 H 1.08999 * 109.47366 * 301.52758 * 1 2 3 25 25 H 1.08997 * 109.46930 * 61.53057 * 1 2 3 26 26 H 1.09003 * 109.46991 * 181.53004 * 1 2 3 27 27 H 1.09004 * 109.47179 * 53.95407 * 3 2 1 28 28 H 1.09004 * 109.47816 * 173.95344 * 3 2 1 29 29 H 0.97001 * 119.99721 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47170 * 44.00919 * 12 2 1 31 31 H 1.09003 * 109.47043 * 284.01264 * 12 2 1 32 32 H 0.96700 * 113.99882 * 299.99651 * 15 13 12 33 33 H 1.08992 * 109.46819 * 65.00216 * 16 13 12 34 34 H 1.09000 * 109.46908 * 304.99880 * 16 13 12 35 35 H 1.08001 * 120.45470 * 359.97438 * 19 18 17 36 36 H 1.07998 * 120.74374 * 180.24959 * 20 19 18 37 37 H 1.08000 * 120.32493 * 179.72751 * 21 20 19 38 38 H 1.07993 * 119.56974 * 180.27563 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0268 3.3495 -1.5284 7 7 2.7111 4.0022 -0.6145 8 14 1.5829 4.1868 -3.1382 9 1 0.2702 4.8667 -2.9970 10 1 2.6250 5.1884 -3.4789 11 1 1.5006 3.1710 -4.2183 12 6 1.9954 -0.7660 1.1376 13 6 3.4728 -1.0840 0.8984 14 1 4.0282 -0.1549 0.7698 15 8 3.6034 -1.8838 -0.2785 16 6 4.0307 -1.8495 2.0999 17 16 5.8147 -2.0973 1.8836 18 6 6.2715 -2.9804 3.3384 19 6 7.5980 -3.3562 3.5293 20 6 7.9432 -4.0444 4.6778 21 6 6.9450 -4.3449 5.5959 22 6 5.6495 -3.9413 5.3430 23 7 5.3494 -3.2810 4.2405 24 1 -0.3634 0.5374 0.8759 25 1 -0.3633 0.4899 -0.9034 26 1 -0.3633 -1.0273 0.0274 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3445 0.1082 29 1 2.9857 4.9183 -0.7766 30 1 1.4356 -1.6956 1.2399 31 1 1.8933 -0.1781 2.0498 32 1 3.1333 -2.7278 -0.2346 33 1 3.5359 -2.8177 2.1754 34 1 3.8511 -1.2777 3.0103 35 1 8.3481 -3.1106 2.7921 36 1 8.9651 -4.3454 4.8550 37 1 7.1810 -4.8852 6.5008 38 1 4.8714 -4.1690 6.0564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414100709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -12.333792 kcal Electronic energy + Delta-G solvation = -19140.492774 eV Core-core repulsion = 16109.210507 eV Total energy + Delta-G solvation = -3031.282267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07563 -37.94936 -35.47621 -32.78366 -32.46945 -31.45528 -30.96419 -27.42608 -26.74280 -24.03500 -23.83330 -23.48917 -21.79081 -20.08401 -18.24235 -16.62902 -16.51175 -16.34120 -15.89549 -15.53056 -14.93022 -14.68076 -14.64653 -14.33809 -14.07082 -13.54122 -13.47043 -13.08622 -12.68420 -12.25579 -12.01911 -11.87930 -11.42140 -11.19106 -11.02048 -10.88077 -10.64687 -10.43435 -10.28253 -10.20213 -9.92413 -9.80512 -9.76413 -9.64967 -9.12103 -8.39341 -7.57565 -7.21233 -5.98763 -3.99248 0.77802 1.01420 1.41798 2.28174 3.35102 3.41263 3.46525 3.48762 4.31444 4.44440 4.57212 4.60814 4.76798 4.84246 4.87805 5.02390 5.16335 5.32955 5.38137 5.44355 5.49525 5.66934 5.72351 5.73845 5.91008 6.02770 6.09298 6.33901 6.34205 6.39733 6.72504 7.28169 7.32802 7.55533 7.82154 8.04671 8.11252 8.21844 8.57189 9.07719 9.64506 11.12387 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.003223 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.667792 B = 8686.810600 C = 9093.531156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.191 3.809 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.033 3.967 13 C 0.127 3.873 14 H 0.113 0.887 15 O -0.534 6.534 16 C -0.129 4.129 17 S -0.042 6.042 18 C 0.117 3.883 19 C -0.155 4.155 20 C -0.059 4.059 21 C -0.189 4.189 22 C 0.114 3.886 23 N -0.493 5.493 24 H 0.011 0.989 25 H 0.074 0.926 26 H 0.043 0.957 27 H -0.011 1.011 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.365 0.635 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -17.276 12.182 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.098 4.098 13 C 0.065 3.935 14 H 0.130 0.870 15 O -0.337 6.337 16 C -0.279 4.279 17 S 0.201 5.799 18 C -0.131 4.131 19 C -0.182 4.182 20 C -0.086 4.086 21 C -0.212 4.212 22 C -0.046 4.046 23 N -0.207 5.207 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.007 0.993 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.210 0.790 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.501 -16.126 10.416 20.611 hybrid contribution -0.692 -0.176 1.633 1.782 sum 6.809 -16.302 12.049 21.384 Atomic orbital electron populations 1.22194 0.88655 0.98947 1.01017 1.62030 1.06637 1.17915 1.38963 1.19803 0.95530 0.81411 0.96656 1.21140 1.34660 0.96777 1.01660 0.91865 1.24987 0.95330 0.97386 0.96983 1.69955 1.38491 1.11405 1.34103 0.86500 0.77897 0.79213 0.83843 1.20830 1.21260 1.19726 1.22621 0.94761 0.98535 0.93904 1.21735 0.95589 0.93977 0.82166 0.86974 1.86713 1.75363 1.33442 1.38149 1.24416 0.93910 1.05259 1.04268 1.86053 1.09479 1.65841 1.18494 1.23470 0.92586 0.98541 0.98519 1.21681 0.95813 1.01241 0.99434 1.21496 0.99866 0.94616 0.92661 1.22043 0.94358 1.03590 1.01258 1.22730 0.95685 0.92645 0.93562 1.68141 1.35407 1.14168 1.02964 0.97082 0.90697 0.93821 0.99295 0.95032 0.92969 0.91803 0.94816 0.78980 0.89034 0.88355 0.84299 0.84488 0.84789 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.06 0.56 1.35 16 2 N -0.53 -11.53 4.60 -244.37 -1.12 -12.65 16 3 C 0.19 5.04 4.57 -4.98 -0.02 5.01 16 4 C -0.50 -14.43 8.54 -34.44 -0.29 -14.73 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.57 4.63 -3.83 -0.02 0.56 16 13 C 0.13 2.12 2.98 -26.73 -0.08 2.04 16 14 H 0.11 2.23 6.56 -51.93 -0.34 1.89 16 15 O -0.53 -9.12 12.98 -35.23 -0.46 -9.58 16 16 C -0.13 -1.79 4.87 37.16 0.18 -1.61 16 17 S -0.04 -0.59 21.69 -107.50 -2.33 -2.93 16 18 C 0.12 1.52 7.00 -16.93 -0.12 1.40 16 19 C -0.16 -1.63 9.84 -39.21 -0.39 -2.02 16 20 C -0.06 -0.49 10.17 -39.32 -0.40 -0.89 16 21 C -0.19 -1.51 10.10 -39.41 -0.40 -1.91 16 22 C 0.11 1.11 11.17 -17.57 -0.20 0.92 16 23 N -0.49 -6.30 9.43 -12.11 -0.11 -6.41 16 24 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 25 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 26 H 0.04 0.71 7.97 -51.93 -0.41 0.29 16 27 H -0.01 -0.30 8.11 -51.93 -0.42 -0.72 16 28 H 0.03 0.89 6.38 -51.93 -0.33 0.56 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 31 H 0.03 0.59 8.05 -51.93 -0.42 0.18 16 32 H 0.36 4.73 9.05 45.56 0.41 5.14 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.38 8.14 -51.92 -0.42 0.95 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -33.09 334.45 -9.29 -42.37 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.75 Total: 1.91 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.27 Total: -8.41 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.50 Total: -45.45 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.46 Total: -9.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.33 Total: -2.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.09 -9.29 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414100709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.040 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds