Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47365 * 2 1 4 4 C 1.35973 * 117.00131 * 180.02562 * 3 2 1 5 5 C 1.38725 * 119.97796 * 180.02562 * 4 3 2 6 6 C 1.38127 * 120.05068 * 179.97438 * 5 4 3 7 7 C 1.38771 * 120.01360 * 0.02562 * 6 5 4 8 8 N 1.40280 * 120.02213 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00091 * 24.78002 * 8 7 6 10 10 O 1.21593 * 120.00294 * 5.63138 * 9 8 7 11 11 N 1.34777 * 119.99572 * 185.63419 * 9 8 7 12 12 C 1.46508 * 119.99731 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47158 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99797 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99548 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00353 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47081 * 89.99884 * 17 15 13 19 19 H 1.48500 * 109.47288 * 210.00107 * 17 15 13 20 20 H 1.48502 * 109.46931 * 330.00324 * 17 15 13 21 21 C 1.39024 * 119.95290 * 359.97438 * 7 6 5 22 22 F 1.35091 * 120.02495 * 180.02562 * 21 7 6 23 23 C 1.38279 * 119.94246 * 359.72822 * 21 7 6 24 24 H 1.09000 * 109.46686 * 60.00229 * 1 2 3 25 25 H 1.09003 * 109.47438 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47542 * 300.01024 * 1 2 3 27 27 H 1.08995 * 109.46863 * 239.99239 * 2 1 3 28 28 H 1.09000 * 109.46686 * 119.99770 * 2 1 3 29 29 H 1.07999 * 119.97491 * 359.96511 * 5 4 3 30 30 H 1.08001 * 119.99549 * 180.02562 * 6 5 4 31 31 H 0.97005 * 119.99647 * 204.77542 * 8 7 6 32 32 H 0.96995 * 120.00470 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47004 * 300.00419 * 12 11 9 34 34 H 1.09004 * 109.46952 * 60.00074 * 12 11 9 35 35 H 0.97008 * 119.99590 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.00064 * 180.29508 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8842 2.8074 0.0000 6 6 5.2533 2.9901 -0.0001 7 6 6.1003 1.8909 -0.0011 8 7 7.4908 2.0762 -0.0017 9 6 8.0190 3.2153 0.4880 10 8 7.3008 4.0378 1.0229 11 7 9.3434 3.4429 0.3845 12 6 9.9175 4.6814 0.9163 13 6 11.4050 4.6899 0.6745 14 1 11.8755 3.8563 0.1743 15 6 12.1651 5.7619 1.0917 16 7 13.4631 5.7695 0.8802 17 14 11.3512 7.2039 1.9561 18 1 11.3394 6.9604 3.4209 19 1 12.1104 8.4470 1.6670 20 1 9.9565 7.3508 1.4675 21 6 5.5698 0.6058 -0.0016 22 9 6.3929 -0.4653 -0.0021 23 6 4.1988 0.4251 0.0046 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2256 3.6634 0.0002 30 1 5.6648 3.9887 0.0008 31 1 8.0721 1.3844 -0.3544 32 1 9.9164 2.7867 -0.0419 33 1 9.4635 5.5366 0.4157 34 1 9.7228 4.7418 1.9871 35 1 13.9979 6.5239 1.1735 36 1 3.7857 -0.5728 0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417463537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = -84.966551 kcal Electronic energy + Delta-G solvation = -21159.956388 eV Core-core repulsion = 17559.311352 eV Total energy + Delta-G solvation = -3600.645035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.00779 -40.53444 -39.67387 -37.44467 -34.59252 -34.23860 -32.43733 -31.94724 -30.70692 -28.97882 -27.36214 -24.49904 -22.95522 -22.44889 -21.70113 -20.42660 -18.89937 -18.34975 -17.59701 -16.79798 -16.47012 -16.42531 -15.94160 -15.62252 -15.06188 -14.81510 -14.47110 -14.32845 -13.98792 -13.51872 -13.47474 -13.24991 -12.85022 -12.56460 -12.50425 -12.37778 -12.10589 -11.89543 -11.40519 -11.13436 -11.02989 -10.79515 -10.01437 -9.99061 -9.65668 -9.51478 -8.96860 -8.82364 -8.32282 -7.63901 -6.24325 -4.27221 1.03529 1.20077 2.84989 2.99104 3.25538 3.32861 3.33193 3.40240 3.75437 4.06713 4.30788 4.51397 4.56852 4.64556 4.70472 4.81154 4.89833 5.04877 5.10977 5.22292 5.42140 5.46758 5.64750 5.74080 5.92778 5.97802 6.16580 6.41675 6.62250 6.83364 7.02595 7.08822 7.19741 7.23056 7.40682 8.18665 8.50546 8.73183 8.94616 9.34962 10.87462 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.038930 B = 0.003118 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.074393 B = 8977.048066 C = 9597.890105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.312 6.312 4 C 0.128 3.872 5 C -0.135 4.135 6 C -0.068 4.068 7 C 0.121 3.879 8 N -0.687 5.687 9 C 0.695 3.305 10 O -0.584 6.584 11 N -0.712 5.712 12 C 0.237 3.763 13 C -0.545 4.545 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.891 5.891 17 Si 0.878 3.122 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.094 3.906 22 F -0.137 7.137 23 C -0.224 4.224 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.408 0.592 32 H 0.396 0.604 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.268 0.732 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.144 -12.548 -3.566 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.226 6.226 4 C 0.082 3.918 5 C -0.154 4.154 6 C -0.088 4.088 7 C 0.023 3.977 8 N -0.334 5.334 9 C 0.395 3.605 10 O -0.463 6.463 11 N -0.364 5.364 12 C 0.115 3.885 13 C -0.583 4.583 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.184 1.184 21 C 0.071 3.929 22 F -0.116 7.116 23 C -0.244 4.244 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.243 0.757 32 H 0.229 0.771 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.601 -11.502 -3.043 25.541 hybrid contribution 0.652 -0.490 0.126 0.825 sum -21.950 -11.991 -2.916 25.181 Atomic orbital electron populations 1.21772 0.92702 1.02824 1.03597 1.22796 0.95924 0.82121 1.01488 1.86105 1.18549 1.29104 1.88874 1.18614 0.82140 0.93329 0.97757 1.20449 0.94736 0.94880 1.05373 1.21352 0.91157 1.00046 0.96272 1.17506 0.83587 0.91943 1.04625 1.42636 1.04657 1.20657 1.65474 1.16060 0.83511 0.81441 0.79461 1.90827 1.59660 1.46388 1.49421 1.45471 1.04683 1.24397 1.61834 1.19459 0.93968 0.80981 0.94121 1.21061 0.89528 1.06919 1.40828 0.90211 1.24782 0.94680 0.98105 0.95037 1.69881 1.05097 1.31684 1.46151 0.86802 0.80369 0.81904 0.80530 1.19818 1.20879 1.18395 1.16992 0.87534 0.81654 1.06697 1.91469 1.71838 1.54038 1.94208 1.20855 0.91594 0.99681 1.12246 0.91474 0.90417 0.91458 0.91981 0.91974 0.84279 0.81482 0.75709 0.77065 0.95514 0.96022 0.92194 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.31 -3.34 10.14 -19.65 -0.20 -3.53 16 4 C 0.13 1.51 6.69 -39.23 -0.26 1.25 16 5 C -0.14 -1.70 9.98 -39.44 -0.39 -2.09 16 6 C -0.07 -1.00 8.72 -39.42 -0.34 -1.34 16 7 C 0.12 1.79 6.44 -83.50 -0.54 1.25 16 8 N -0.69 -10.48 5.33 -14.12 -0.08 -10.56 16 9 C 0.69 13.30 8.37 -86.92 -0.73 12.57 16 10 O -0.58 -12.86 13.51 5.28 0.07 -12.79 16 11 N -0.71 -14.19 5.55 -66.41 -0.37 -14.56 16 12 C 0.24 5.71 4.50 -5.19 -0.02 5.68 16 13 C -0.55 -14.73 9.83 -34.44 -0.34 -15.06 16 14 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 17 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 21 C 0.09 1.23 7.30 -39.27 -0.29 0.95 16 22 F -0.14 -1.77 16.81 2.25 0.04 -1.73 16 23 C -0.22 -2.56 9.01 -39.40 -0.35 -2.91 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 28 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.17 2.77 5.78 -52.49 -0.30 2.46 16 31 H 0.41 5.12 8.47 -40.82 -0.35 4.78 16 32 H 0.40 6.90 8.34 -40.82 -0.34 6.55 16 33 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.14 1.25 6.29 -52.48 -0.33 0.92 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -31.55 313.16 -6.64 -38.20 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.15 Total: 6.71 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.78 Total: 2.51 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.33 Total: -50.54 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.13 Total: -16.33 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.55 -6.64 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417463537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.769 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds