Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47365 * 2 1 4 4 C 1.35973 * 117.00131 * 180.02562 * 3 2 1 5 5 C 1.38725 * 119.97796 * 180.02562 * 4 3 2 6 6 C 1.38127 * 120.05068 * 179.97438 * 5 4 3 7 7 C 1.38771 * 120.01360 * 0.02562 * 6 5 4 8 8 N 1.40280 * 120.02213 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00091 * 24.78002 * 8 7 6 10 10 O 1.21593 * 120.00294 * 5.63138 * 9 8 7 11 11 N 1.34777 * 119.99572 * 185.63419 * 9 8 7 12 12 C 1.46508 * 119.99731 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47158 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99797 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99548 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00353 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47081 * 89.99884 * 17 15 13 19 19 H 1.48500 * 109.47288 * 210.00107 * 17 15 13 20 20 H 1.48502 * 109.46931 * 330.00324 * 17 15 13 21 21 C 1.39024 * 119.95290 * 359.97438 * 7 6 5 22 22 F 1.35091 * 120.02495 * 180.02562 * 21 7 6 23 23 C 1.38279 * 119.94246 * 359.72822 * 21 7 6 24 24 H 1.09000 * 109.46686 * 60.00229 * 1 2 3 25 25 H 1.09003 * 109.47438 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47542 * 300.01024 * 1 2 3 27 27 H 1.08995 * 109.46863 * 239.99239 * 2 1 3 28 28 H 1.09000 * 109.46686 * 119.99770 * 2 1 3 29 29 H 1.07999 * 119.97491 * 359.96511 * 5 4 3 30 30 H 1.08001 * 119.99549 * 180.02562 * 6 5 4 31 31 H 0.97005 * 119.99647 * 204.77542 * 8 7 6 32 32 H 0.96995 * 120.00470 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47004 * 300.00419 * 12 11 9 34 34 H 1.09004 * 109.46952 * 60.00074 * 12 11 9 35 35 H 0.97008 * 119.99590 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.00064 * 180.29508 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8842 2.8074 0.0000 6 6 5.2533 2.9901 -0.0001 7 6 6.1003 1.8909 -0.0011 8 7 7.4908 2.0762 -0.0017 9 6 8.0190 3.2153 0.4880 10 8 7.3008 4.0378 1.0229 11 7 9.3434 3.4429 0.3845 12 6 9.9175 4.6814 0.9163 13 6 11.4050 4.6899 0.6745 14 1 11.8755 3.8563 0.1743 15 6 12.1651 5.7619 1.0917 16 7 13.4631 5.7695 0.8802 17 14 11.3512 7.2039 1.9561 18 1 11.3394 6.9604 3.4209 19 1 12.1104 8.4470 1.6670 20 1 9.9565 7.3508 1.4675 21 6 5.5698 0.6058 -0.0016 22 9 6.3929 -0.4653 -0.0021 23 6 4.1988 0.4251 0.0046 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2256 3.6634 0.0002 30 1 5.6648 3.9887 0.0008 31 1 8.0721 1.3844 -0.3544 32 1 9.9164 2.7867 -0.0419 33 1 9.4635 5.5366 0.4157 34 1 9.7228 4.7418 1.9871 35 1 13.9979 6.5239 1.1735 36 1 3.7857 -0.5728 0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417463537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = -106.793294 kcal Electronic energy + Delta-G solvation = -21160.902866 eV Core-core repulsion = 17559.311352 eV Total energy + Delta-G solvation = -3601.591514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.03337 -41.74023 -40.78780 -38.52755 -36.26354 -35.60419 -34.41279 -32.59892 -31.69901 -30.45178 -28.88548 -25.36985 -24.46134 -23.36918 -23.07734 -21.88430 -20.10877 -19.61426 -18.85123 -18.36134 -17.68820 -17.23643 -16.97789 -16.75988 -16.57379 -16.39918 -16.01564 -15.32701 -15.14040 -14.97020 -14.57636 -14.39928 -14.25748 -14.12926 -13.45619 -13.24417 -13.18977 -13.00704 -12.81301 -12.67643 -12.10913 -11.91620 -11.90125 -11.66204 -11.28381 -10.95286 -10.91190 -10.04915 -9.97498 -8.74204 -8.39219 -6.46731 0.02384 0.15903 1.35470 1.37097 1.50011 1.55353 1.96885 2.18932 2.29652 2.58195 2.96501 3.05119 3.23044 3.61375 3.89225 4.03771 4.09768 4.15777 4.37563 4.43809 4.59578 4.73734 4.85087 4.97729 4.98491 5.00000 5.04051 5.08834 5.24330 5.29350 5.31766 5.45752 5.72794 5.84357 6.18430 6.35393 6.54939 6.99161 7.17635 7.44767 8.75400 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.038930 B = 0.003118 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.074393 B = 8977.048066 C = 9597.890105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.321 6.321 4 C 0.137 3.863 5 C -0.137 4.137 6 C -0.080 4.080 7 C 0.093 3.907 8 N -0.672 5.672 9 C 0.698 3.302 10 O -0.614 6.614 11 N -0.713 5.713 12 C 0.250 3.750 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.256 1.256 21 C 0.097 3.903 22 F -0.135 7.135 23 C -0.214 4.214 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.420 0.580 32 H 0.407 0.593 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.272 0.728 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.461 -13.726 -3.439 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.235 6.235 4 C 0.090 3.910 5 C -0.156 4.156 6 C -0.101 4.101 7 C -0.003 4.003 8 N -0.321 5.321 9 C 0.398 3.602 10 O -0.495 6.495 11 N -0.365 5.365 12 C 0.127 3.873 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.175 4.175 16 N -0.570 5.570 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.180 1.180 21 C 0.075 3.925 22 F -0.114 7.114 23 C -0.234 4.234 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.258 0.742 32 H 0.243 0.757 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -24.948 -12.745 -2.942 28.169 hybrid contribution 1.230 -0.271 0.033 1.259 sum -23.718 -13.015 -2.909 27.211 Atomic orbital electron populations 1.21809 0.91384 1.04208 1.03271 1.23161 0.97053 0.80613 1.02651 1.86122 1.17521 1.31481 1.88402 1.18632 0.82974 0.93019 0.96392 1.20554 0.94041 0.96116 1.04905 1.21167 0.92210 0.99107 0.97614 1.17672 0.82965 0.92881 1.06791 1.42332 1.05357 1.19623 1.64740 1.16051 0.82804 0.82092 0.79213 1.90813 1.60204 1.47750 1.50713 1.45163 1.05405 1.23668 1.62312 1.19050 0.92160 0.82482 0.93654 1.21261 0.91039 1.06226 1.40035 0.92316 1.25602 0.95152 1.00881 0.95830 1.69987 1.06520 1.32881 1.47614 0.85829 0.79491 0.78832 0.79585 1.19073 1.19953 1.18001 1.17019 0.88179 0.80953 1.06354 1.91477 1.71954 1.53754 1.94181 1.21118 0.90641 1.01005 1.10652 0.91712 0.88174 0.91903 0.90603 0.90922 0.82979 0.83737 0.74207 0.75735 0.96374 0.96773 0.91832 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 71.98 0.74 -0.47 16 2 C 0.04 0.45 5.46 71.98 0.39 0.84 16 3 O -0.32 -6.02 10.14 -93.24 -0.95 -6.97 16 4 C 0.14 2.93 6.69 22.50 0.15 3.08 16 5 C -0.14 -3.30 9.98 22.36 0.22 -3.08 16 6 C -0.08 -2.36 8.72 22.37 0.19 -2.17 16 7 C 0.09 2.70 6.44 38.10 0.25 2.94 16 8 N -0.67 -20.21 5.33 -316.86 -1.69 -21.89 16 9 C 0.70 26.74 8.37 179.06 1.50 28.24 16 10 O -0.61 -27.31 13.51 -4.01 -0.05 -27.36 16 11 N -0.71 -28.47 5.55 -482.27 -2.68 -31.15 16 12 C 0.25 12.10 4.50 85.63 0.38 12.48 16 13 C -0.55 -29.94 9.83 25.60 0.25 -29.69 16 14 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 15 C 0.03 1.44 5.47 84.65 0.46 1.91 16 16 N -0.93 -55.38 13.96 21.45 0.30 -55.08 16 17 Si 0.94 43.55 27.47 68.60 1.88 45.44 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 21 C 0.10 2.38 7.30 22.47 0.16 2.54 16 22 F -0.14 -3.20 16.81 44.97 0.76 -2.45 16 23 C -0.21 -4.29 9.01 22.39 0.20 -4.09 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 28 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 29 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.15 4.93 5.78 -2.91 -0.02 4.92 16 31 H 0.42 10.21 8.47 -92.70 -0.79 9.42 16 32 H 0.41 14.21 8.34 -92.71 -0.77 13.44 16 33 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 34 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 35 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 36 H 0.17 2.34 6.29 -2.91 -0.02 2.32 16 Total: -1.00 -67.45 313.16 2.01 -65.44 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.48 Total: 21.49 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 4.91 Total: 12.53 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.07 Total: -108.13 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.00 Total: -34.33 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.76 Total: -2.45 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -67.45 2.01 -65.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417463537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.357 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds