Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 120.00007 * 2 1 4 4 C 1.50702 * 109.46801 * 269.99555 * 3 2 1 5 5 C 1.33381 * 125.20534 * 90.00074 * 4 3 2 6 6 C 1.38427 * 114.92374 * 180.02562 * 5 4 3 7 7 C 1.33387 * 114.91991 * 0.25034 * 6 5 4 8 8 S 1.75886 * 109.59194 * 359.63459 * 7 6 5 9 9 C 1.34779 * 119.99619 * 179.97438 * 2 1 3 10 10 O 1.21278 * 120.00011 * 180.02562 * 9 2 1 11 11 C 1.50700 * 120.00097 * 359.97438 * 9 2 1 12 12 H 1.08997 * 109.47326 * 320.00460 * 11 9 2 13 13 N 1.46901 * 109.47258 * 199.99802 * 11 9 2 14 14 C 1.53005 * 109.46732 * 80.00263 * 11 9 2 15 15 C 1.53004 * 109.47212 * 184.99940 * 14 11 9 16 16 C 1.50697 * 109.47049 * 179.97438 * 15 14 11 17 17 H 1.07988 * 120.00360 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99645 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00039 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00032 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47212 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47558 * 119.99880 * 20 18 16 23 23 H 1.48506 * 109.47300 * 240.00081 * 20 18 16 24 24 H 1.08996 * 109.46791 * 90.00265 * 1 2 3 25 25 H 1.09000 * 109.47435 * 210.00400 * 1 2 3 26 26 H 1.08995 * 109.46787 * 330.00701 * 1 2 3 27 27 H 1.09000 * 109.46999 * 149.99795 * 3 2 1 28 28 H 1.08995 * 109.47363 * 29.99713 * 3 2 1 29 29 H 1.08001 * 122.53741 * 0.05729 * 5 4 3 30 30 H 1.08002 * 122.53759 * 179.97438 * 6 5 4 31 31 H 1.08002 * 125.20431 * 179.75072 * 7 6 5 32 32 H 1.00901 * 110.99829 * 176.04923 * 13 11 9 33 33 H 1.00901 * 110.99740 * 300.00393 * 13 11 9 34 34 H 1.08998 * 109.47014 * 304.99644 * 14 11 9 35 35 H 1.08994 * 109.47570 * 64.99772 * 14 11 9 36 36 H 1.08998 * 109.46889 * 299.99780 * 15 14 11 37 37 H 1.09004 * 109.46971 * 59.99410 * 15 14 11 38 38 H 0.96997 * 119.99704 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 6 1.6332 2.4705 -2.1459 6 6 2.0739 2.7396 -3.4303 7 6 3.2451 2.1869 -3.7499 8 16 3.8621 1.2769 -2.3770 9 6 2.1389 -1.1673 0.0005 10 8 3.3517 -1.1673 0.0010 11 6 1.3853 -2.4723 0.0017 12 1 0.5221 -2.3929 0.6624 13 7 2.2677 -3.5469 0.4757 14 6 0.9129 -2.7896 -1.4186 15 6 0.0429 -4.0481 -1.3975 16 6 -0.4229 -4.3602 -2.7963 17 1 -0.1283 -3.7245 -3.6180 18 6 -1.2252 -5.4576 -3.0269 19 7 -1.5843 -6.2315 -2.0261 20 14 -1.8032 -5.8442 -4.7606 21 1 -1.2652 -4.8276 -5.7000 22 1 -1.3159 -7.1900 -5.1564 23 1 -3.2874 -5.8226 -4.8039 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 3.1500 1.1384 0.5139 28 1 1.6085 2.0284 0.5138 29 1 0.6998 2.8530 -1.7600 30 1 1.5100 3.3471 -4.1226 31 1 3.7397 2.2848 -4.7050 32 1 1.7677 -4.4204 0.5469 33 1 3.0761 -3.6405 -0.1208 34 1 0.3311 -1.9522 -1.8036 35 1 1.7778 -2.9566 -2.0605 36 1 0.6247 -4.8855 -1.0125 37 1 -0.8221 -3.8811 -0.7556 38 1 -2.1484 -7.0037 -2.1884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = -7.426246 kcal Electronic energy + Delta-G solvation = -19989.252134 eV Core-core repulsion = 16958.182674 eV Total energy + Delta-G solvation = -3031.069459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91961 -37.85321 -35.63683 -35.34560 -32.86546 -31.01198 -29.87741 -27.37693 -26.78908 -25.43004 -23.78664 -22.70477 -20.50663 -19.48367 -18.74910 -17.33606 -17.30941 -16.35678 -15.91583 -15.59985 -14.87243 -14.55026 -14.39840 -14.04567 -13.51877 -13.13550 -13.12148 -12.82549 -12.71923 -12.55711 -12.49995 -12.29884 -12.08892 -11.67023 -11.41649 -11.05947 -10.91558 -10.66313 -10.64820 -9.97354 -9.89796 -9.29925 -9.21331 -8.80098 -8.62734 -8.44328 -8.43786 -8.16574 -6.08910 -4.11653 0.93122 1.66489 2.06412 2.62658 2.92200 3.22955 3.25711 3.33842 3.38042 4.39231 4.67749 4.75298 5.01721 5.12300 5.14617 5.20867 5.27537 5.34293 5.43602 5.49777 5.59583 5.67108 5.77313 5.87851 6.04381 6.22916 6.31415 6.41301 6.49154 6.56794 6.88352 7.34354 7.51633 7.58617 7.64518 7.88536 7.91696 8.31438 8.41411 8.94554 9.53342 11.02071 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.004646 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.770032 B = 6025.032873 C = 6867.825636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.187 3.813 4 C -0.196 4.196 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.224 4.224 8 S 0.134 5.866 9 C 0.526 3.474 10 O -0.532 6.532 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.136 4.136 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.354 0.646 33 H 0.345 0.655 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 17.689 2.554 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.350 5.350 3 C 0.062 3.938 4 C -0.315 4.315 5 C -0.162 4.162 6 C -0.170 4.170 7 C -0.360 4.360 8 S 0.399 5.601 9 C 0.315 3.685 10 O -0.407 6.407 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.176 4.176 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.288 17.085 3.542 18.909 hybrid contribution -2.083 0.141 -2.412 3.189 sum 5.206 17.226 1.130 18.031 Atomic orbital electron populations 1.21923 0.78956 1.03243 1.02575 1.47910 1.07198 1.05161 1.74751 1.19772 0.98652 0.85579 0.89781 1.24983 0.99537 1.05180 1.01804 1.20082 1.00835 1.01098 0.94190 1.20120 0.96753 1.03107 0.96997 1.25767 1.01572 1.05201 1.03460 1.84709 1.21522 1.49737 1.04177 1.20956 0.88028 0.85243 0.74266 1.90622 1.14017 1.87217 1.48839 1.21529 0.94996 0.89143 0.98357 0.88488 1.58769 1.10964 1.09344 1.57227 1.22361 1.00608 1.01632 0.92991 1.19098 0.93963 0.90636 0.97489 1.21211 1.30592 1.10616 0.93577 0.92723 1.25000 0.96121 0.96159 0.96973 1.69958 1.36466 1.16160 1.30641 0.86550 0.78479 0.78292 0.84794 1.19777 1.20932 1.20927 0.92082 0.90130 0.91280 0.88951 0.88828 0.84544 0.84605 0.82190 0.83098 0.84167 0.92499 0.92800 0.96433 0.96381 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.61 59.85 0.58 1.42 16 2 N -0.62 -8.32 2.86 -182.95 -0.52 -8.84 16 3 C 0.19 2.20 5.94 -5.19 -0.03 2.16 16 4 C -0.20 -2.44 6.09 -36.00 -0.22 -2.66 16 5 C -0.13 -1.45 10.05 -41.21 -0.41 -1.87 16 6 C -0.14 -1.52 10.18 -41.21 -0.42 -1.94 16 7 C -0.22 -2.56 11.23 29.04 0.33 -2.24 16 8 S 0.13 1.79 23.33 -107.50 -2.51 -0.72 16 9 C 0.53 8.88 6.92 -10.98 -0.08 8.80 16 10 O -0.53 -10.25 15.83 5.56 0.09 -10.17 16 11 C 0.07 1.29 2.47 -68.86 -0.17 1.12 16 12 H 0.10 1.58 6.31 -51.93 -0.33 1.25 16 13 N -0.83 -14.54 8.94 -5.65 -0.05 -14.59 16 14 C -0.14 -2.72 4.71 -26.73 -0.13 -2.85 16 15 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 25 H 0.08 0.91 5.94 -51.93 -0.31 0.61 16 26 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 27 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 28 H 0.09 0.80 7.89 -51.93 -0.41 0.39 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 33 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 34 H 0.06 1.11 6.94 -51.93 -0.36 0.75 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -31.63 331.16 -8.63 -40.26 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.24 Total: 8.69 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.10 Total: -10.68 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.16 Total: -48.67 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.51 Total: -0.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.63 -8.63 -40.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds