Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99878 * 2 1 4 4 C 1.50696 * 109.46769 * 270.00163 * 3 2 1 5 5 C 1.33387 * 125.20444 * 90.00584 * 4 3 2 6 6 C 1.38428 * 114.92069 * 179.97438 * 5 4 3 7 7 C 1.33381 * 114.92151 * 359.97438 * 6 5 4 8 8 S 1.75885 * 125.20175 * 269.69239 * 4 3 2 9 9 C 1.34770 * 119.99838 * 180.02562 * 2 1 3 10 10 O 1.21286 * 119.99886 * 180.02562 * 9 2 1 11 11 C 1.50701 * 120.00293 * 359.97438 * 9 2 1 12 12 H 1.09002 * 109.47060 * 40.00174 * 11 9 2 13 13 N 1.46896 * 109.47239 * 160.00327 * 11 9 2 14 14 C 1.52997 * 109.47212 * 280.00118 * 11 9 2 15 15 C 1.52994 * 109.47404 * 174.99684 * 14 11 9 16 16 C 1.50698 * 109.47502 * 179.97438 * 15 14 11 17 17 H 1.08005 * 119.99844 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00426 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00342 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47235 * 60.00290 * 20 18 16 22 22 H 1.48501 * 109.47463 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47109 * 300.00119 * 20 18 16 24 24 H 1.08998 * 109.46934 * 269.99976 * 1 2 3 25 25 H 1.08996 * 109.47222 * 29.99832 * 1 2 3 26 26 H 1.08999 * 109.47450 * 150.00258 * 1 2 3 27 27 H 1.08994 * 109.47012 * 30.00252 * 3 2 1 28 28 H 1.08997 * 109.46634 * 150.00259 * 3 2 1 29 29 H 1.08004 * 122.53831 * 359.94874 * 5 4 3 30 30 H 1.07998 * 122.53580 * 180.02562 * 6 5 4 31 31 H 1.08007 * 125.20371 * 180.02562 * 7 6 5 32 32 H 1.00900 * 111.00550 * 59.99964 * 13 11 9 33 33 H 1.00896 * 111.00310 * 183.95550 * 13 11 9 34 34 H 1.09000 * 109.47325 * 294.99852 * 14 11 9 35 35 H 1.09008 * 109.47017 * 54.99761 * 14 11 9 36 36 H 1.09000 * 109.47476 * 300.00087 * 15 14 11 37 37 H 1.09008 * 109.46970 * 60.00049 * 15 14 11 38 38 H 0.97002 * 119.99862 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6329 2.4707 -2.1457 6 6 2.0741 2.7408 -3.4298 7 6 3.2483 2.1935 -3.7473 8 16 3.8658 1.2841 -2.3742 9 6 2.1388 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0001 11 6 1.3854 -2.4723 -0.0005 12 1 0.5217 -2.3932 -0.6608 13 7 2.2674 -3.5470 -0.4747 14 6 0.9140 -2.7891 1.4201 15 6 0.0440 -4.0474 1.4002 16 6 -0.4198 -4.3598 2.7996 17 1 -0.1240 -3.7240 3.6211 18 6 -1.2217 -5.4572 3.0313 19 7 -1.5814 -6.2316 2.0311 20 14 -1.7972 -5.8439 4.7658 21 1 -2.5901 -4.7031 5.2903 22 1 -2.6404 -7.0661 4.7467 23 1 -0.6180 -6.0704 5.6397 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5138 29 1 0.6987 2.8518 -1.7603 30 1 1.5106 3.3492 -4.1216 31 1 3.7457 2.2964 -4.7004 32 1 3.0763 -3.6404 0.1212 33 1 1.7675 -4.4205 -0.5452 34 1 1.7794 -2.9558 2.0615 35 1 0.3324 -1.9514 1.8052 36 1 -0.8215 -3.8808 0.7589 37 1 0.6256 -4.8851 1.0151 38 1 -2.1459 -7.0034 2.1941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -7.676247 kcal Electronic energy + Delta-G solvation = -19759.694497 eV Core-core repulsion = 16728.614197 eV Total energy + Delta-G solvation = -3031.080300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92658 -37.91402 -35.64599 -35.34973 -32.87053 -31.04413 -29.88159 -27.41845 -26.78925 -25.44080 -23.82856 -22.72714 -20.51116 -19.49407 -18.80030 -17.39579 -17.25713 -16.32177 -16.08700 -15.58783 -14.82091 -14.59961 -14.41912 -14.05650 -13.56344 -13.16078 -13.07124 -12.87929 -12.78356 -12.55826 -12.51027 -12.33750 -12.12210 -11.62646 -11.47035 -11.05482 -10.89847 -10.72335 -10.68460 -9.97412 -9.90963 -9.31388 -9.24241 -8.84438 -8.63699 -8.49599 -8.44317 -8.16081 -6.09108 -4.12385 0.87177 1.60780 2.01098 2.56471 2.91852 3.21729 3.27782 3.32825 3.35132 4.38548 4.66080 4.72940 4.94172 5.11495 5.16138 5.19062 5.27019 5.30326 5.42027 5.47671 5.55609 5.66275 5.76653 5.87235 5.98404 6.16472 6.29803 6.36067 6.46986 6.55028 6.87067 7.34400 7.50596 7.58698 7.64291 7.87776 7.92256 8.30409 8.41166 8.93348 9.52518 11.01734 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035735 B = 0.003412 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.346741 B = 8203.483079 C = 8454.671223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.185 3.815 4 C -0.194 4.194 5 C -0.133 4.133 6 C -0.140 4.140 7 C -0.226 4.226 8 S 0.139 5.861 9 C 0.526 3.474 10 O -0.532 6.532 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.137 4.137 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.345 0.655 33 H 0.354 0.646 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 17.646 -8.917 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.350 5.350 3 C 0.061 3.939 4 C -0.313 4.313 5 C -0.165 4.165 6 C -0.170 4.170 7 C -0.363 4.363 8 S 0.404 5.596 9 C 0.315 3.685 10 O -0.407 6.407 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C -0.177 4.177 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.295 17.037 -9.359 20.762 hybrid contribution -2.067 0.164 1.448 2.529 sum 5.228 17.201 -7.911 19.642 Atomic orbital electron populations 1.21916 0.78946 1.03361 1.02486 1.47898 1.07198 1.05124 1.74786 1.19758 0.98734 0.85750 0.89683 1.25012 0.99440 1.05027 1.01802 1.20095 1.00982 1.01219 0.94225 1.20112 0.96813 1.03111 0.97008 1.25778 1.01468 1.05458 1.03567 1.84773 1.21144 1.49563 1.04166 1.20963 0.88027 0.85257 0.74251 1.90623 1.14015 1.87221 1.48864 1.21519 0.95005 0.89137 0.98317 0.88537 1.58750 1.10927 1.09307 1.57296 1.22379 1.00622 1.01688 0.93016 1.19087 0.93978 0.90648 0.97449 1.21141 1.30873 1.10726 0.93522 0.92787 1.25007 0.96108 0.96141 0.97015 1.69940 1.36309 1.16137 1.30804 0.86646 0.78762 0.77733 0.84805 1.20210 1.21219 1.20234 0.91806 0.91377 0.90255 0.88751 0.88918 0.84546 0.84642 0.82211 0.84175 0.83097 0.92752 0.92420 0.96380 0.96442 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.57 59.85 0.57 1.42 16 2 N -0.62 -8.32 2.86 -182.96 -0.52 -8.84 16 3 C 0.19 2.18 5.90 -5.19 -0.03 2.15 16 4 C -0.19 -2.30 6.09 -36.01 -0.22 -2.52 16 5 C -0.13 -1.37 10.05 -41.21 -0.41 -1.78 16 6 C -0.14 -1.37 10.18 -41.21 -0.42 -1.79 16 7 C -0.23 -2.34 11.23 29.03 0.33 -2.01 16 8 S 0.14 1.74 23.33 -107.50 -2.51 -0.77 16 9 C 0.53 8.87 6.92 -10.99 -0.08 8.79 16 10 O -0.53 -10.25 15.83 5.55 0.09 -10.16 16 11 C 0.08 1.30 2.47 -68.87 -0.17 1.13 16 12 H 0.10 1.60 6.31 -51.93 -0.33 1.28 16 13 N -0.83 -14.62 8.94 -5.66 -0.05 -14.67 16 14 C -0.14 -2.69 4.71 -26.74 -0.13 -2.81 16 15 C 0.03 0.61 4.74 -27.89 -0.13 0.48 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 17 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H 0.06 0.69 7.65 -51.93 -0.40 0.30 16 25 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 26 H 0.08 0.93 5.94 -51.93 -0.31 0.62 16 27 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.09 1.21 7.42 -51.93 -0.39 0.82 16 29 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.35 6.13 8.58 -39.29 -0.34 5.79 16 33 H 0.35 6.21 7.55 -39.29 -0.30 5.92 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.08 6.94 -51.92 -0.36 0.72 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.44 6.87 -51.92 -0.36 0.08 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -31.36 331.44 -8.65 -40.01 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.26 Total: 8.46 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.10 Total: -10.00 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.16 Total: -48.67 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.51 Total: -0.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.36 -8.65 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.333 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds