Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 116.99752 * 2 1 4 4 C 1.38773 * 120.04607 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.99517 * 179.69812 * 4 3 2 6 6 C 1.38255 * 120.07924 * 0.53577 * 5 4 3 7 7 C 1.50703 * 119.95539 * 179.76449 * 6 5 4 8 8 N 1.46505 * 109.47064 * 259.72199 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46708 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00462 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00032 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00203 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00175 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47108 * 60.00262 * 17 15 13 19 19 H 1.48505 * 109.47276 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47359 * 299.99971 * 17 15 13 21 21 C 1.38473 * 120.08680 * 359.49035 * 6 5 4 22 22 F 1.35097 * 119.99985 * 180.25832 * 21 6 5 23 23 C 1.38385 * 120.00146 * 0.22694 * 21 6 5 24 24 H 1.09004 * 109.47277 * 60.00315 * 1 2 3 25 25 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47392 * 299.99519 * 1 2 3 27 27 H 1.07998 * 119.99426 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96085 * 180.29529 * 5 4 3 29 29 H 1.09002 * 109.47152 * 139.72283 * 7 6 5 30 30 H 1.09001 * 109.46980 * 19.72383 * 7 6 5 31 31 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 32 32 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 34 34 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 35 35 H 0.96994 * 120.00630 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.03880 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2909 2.3753 0.0005 5 6 1.9191 3.6055 0.0068 6 6 3.2997 3.6786 0.0014 7 6 3.9820 5.0223 0.0030 8 7 4.4173 5.3505 -1.3569 9 6 5.0550 6.5130 -1.5981 10 8 5.2695 7.2893 -0.6872 11 7 5.4550 6.8152 -2.8492 12 6 6.1487 8.0787 -3.1113 13 6 6.4845 8.1725 -4.5774 14 1 6.2091 7.3710 -5.2470 15 6 7.1432 9.2816 -5.0642 16 7 7.4781 10.2579 -4.2491 17 14 7.5601 9.3977 -6.8814 18 1 6.3097 9.3438 -7.6805 19 1 8.2621 10.6790 -7.1474 20 1 8.4395 8.2628 -7.2610 21 6 4.0563 2.5189 0.0003 22 9 5.4052 2.5924 0.0003 23 6 3.4306 1.2845 -0.0001 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2124 2.3195 0.0005 28 1 1.3310 4.5113 0.0121 29 1 4.8483 4.9891 0.6637 30 1 3.2854 5.7831 0.3551 31 1 4.2459 4.7314 -2.0836 32 1 5.2836 6.1961 -3.5761 33 1 5.5037 8.9119 -2.8327 34 1 7.0666 8.1178 -2.5248 35 1 7.9412 11.0383 -4.5915 36 1 4.0202 0.3796 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426414686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -91.168868 kcal Electronic energy + Delta-G solvation = -20952.294855 eV Core-core repulsion = 17351.380867 eV Total energy + Delta-G solvation = -3600.913988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.10460 -40.51897 -39.17016 -37.82318 -34.61980 -33.90727 -32.29690 -31.40575 -30.50473 -28.09144 -27.14008 -25.29942 -23.21533 -22.51585 -21.53165 -20.13750 -18.84930 -18.12549 -17.32024 -16.47599 -16.32176 -16.25436 -15.79945 -15.53507 -15.27278 -14.93644 -14.69763 -14.55077 -14.00861 -13.50118 -13.27449 -13.03499 -12.98480 -12.74843 -12.46782 -11.94224 -11.81912 -11.63795 -11.36591 -11.29431 -10.93836 -10.83566 -10.26562 -9.43615 -9.34169 -9.22283 -8.75154 -8.64711 -8.57292 -7.70486 -6.11232 -4.17661 0.77507 0.85537 2.69118 3.08266 3.28715 3.33158 3.34806 3.64916 4.00155 4.07673 4.32398 4.36871 4.46747 4.53195 4.65808 4.69654 4.93500 4.97392 5.04403 5.19987 5.24590 5.46836 5.62918 5.66243 5.83222 5.86348 6.10781 6.32679 6.85785 6.87908 7.16821 7.56667 7.59890 7.62439 7.95566 8.09077 8.80971 8.99341 9.38024 9.52767 10.99026 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029953 B = 0.002867 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.570099 B = 9764.473269 C =10010.659001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.160 3.840 4 C -0.222 4.222 5 C -0.030 4.030 6 C -0.173 4.173 7 C 0.188 3.812 8 N -0.754 5.754 9 C 0.694 3.306 10 O -0.601 6.601 11 N -0.729 5.729 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.159 3.841 22 F -0.124 7.124 23 C -0.194 4.194 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.391 0.609 32 H 0.386 0.614 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 -20.931 8.337 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.114 3.886 4 C -0.240 4.240 5 C -0.049 4.049 6 C -0.175 4.175 7 C 0.064 3.936 8 N -0.411 5.411 9 C 0.394 3.606 10 O -0.480 6.480 11 N -0.381 5.381 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.139 3.861 22 F -0.102 7.102 23 C -0.213 4.213 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.224 0.776 32 H 0.218 0.782 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.030 -20.145 9.185 26.759 hybrid contribution 0.074 -0.391 -1.643 1.690 sum -14.955 -20.535 7.543 26.500 Atomic orbital electron populations 1.23132 0.77756 1.04287 1.01733 1.86077 1.21858 1.26515 1.88215 1.18639 0.91377 0.84489 0.94140 1.21292 1.00563 0.91930 1.10251 1.20808 0.92716 0.97772 0.93577 1.19982 0.94215 0.94442 1.08817 1.19736 0.98537 0.90732 0.84632 1.45178 1.64766 1.21553 1.09648 1.16124 0.78811 0.81290 0.84393 1.90870 1.62682 1.50364 1.44103 1.45712 1.61564 1.24554 1.06295 1.18973 0.91724 0.78897 0.95797 1.21199 1.39076 1.04792 0.92942 0.92018 1.24944 0.95364 0.95316 0.98415 1.69968 1.39331 1.07975 1.35061 0.86473 0.78585 0.77433 0.84373 1.20124 1.21094 1.20098 1.17166 0.77226 0.92939 0.98769 1.91570 1.28414 1.97041 1.93178 1.20233 0.92563 0.97636 1.10899 0.92253 0.87973 0.92298 0.84630 0.84214 0.90850 0.90610 0.77576 0.78177 0.95740 0.95732 0.92430 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.61 10.50 -19.41 -0.20 -2.81 16 3 C 0.16 1.45 6.68 -39.22 -0.26 1.19 16 4 C -0.22 -1.74 9.04 -39.42 -0.36 -2.09 16 5 C -0.03 -0.26 9.66 -39.61 -0.38 -0.65 16 6 C -0.17 -1.91 5.26 -104.53 -0.55 -2.46 16 7 C 0.19 2.60 5.52 -5.19 -0.03 2.57 16 8 N -0.75 -11.96 5.55 -66.41 -0.37 -12.33 16 9 C 0.69 14.88 8.57 -86.92 -0.74 14.14 16 10 O -0.60 -15.45 16.34 5.29 0.09 -15.36 16 11 N -0.73 -16.18 5.55 -66.42 -0.37 -16.54 16 12 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 13 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 14 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 17 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.16 1.82 7.24 -39.44 -0.29 1.53 16 22 F -0.12 -1.64 16.66 2.25 0.04 -1.60 16 23 C -0.19 -1.94 9.97 -39.37 -0.39 -2.34 16 24 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 25 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 27 H 0.14 0.72 6.30 -52.49 -0.33 0.39 16 28 H 0.14 1.00 8.03 -52.49 -0.42 0.58 16 29 H 0.07 1.12 7.94 -51.93 -0.41 0.70 16 30 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 31 H 0.39 5.24 8.48 -40.82 -0.35 4.89 16 32 H 0.39 7.36 8.34 -40.82 -0.34 7.02 16 33 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -34.40 321.45 -7.00 -41.40 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.29 Total: 5.43 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -2.46 Total: 6.63 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.00 Total: -54.68 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.12 Total: -18.17 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.40 -7.00 -41.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.771 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds