Wall clock time and date at job start Tue Mar 31 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21584 * 120.00541 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99489 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99511 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46708 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00462 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00032 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00203 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00175 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46913 * 89.99939 * 14 12 10 16 16 H 1.48498 * 109.47346 * 209.99794 * 14 12 10 17 17 H 1.48496 * 109.47280 * 329.99858 * 14 12 10 18 18 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 19 19 C 1.50691 * 109.47514 * 295.00358 * 18 2 1 20 20 C 1.33396 * 125.20785 * 89.71617 * 19 18 2 21 21 C 1.38421 * 114.92374 * 179.86105 * 20 19 18 22 22 C 1.33384 * 114.92095 * 0.43266 * 21 20 19 23 23 S 1.75882 * 109.59350 * 359.76986 * 22 21 20 24 24 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 26 26 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 27 27 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 28 28 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 29 29 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 30 30 H 0.97003 * 120.00377 * 0.02562 * 8 6 5 31 31 H 1.08994 * 109.47121 * 299.99693 * 9 8 6 32 32 H 1.08994 * 109.47503 * 60.00345 * 9 8 6 33 33 H 0.96994 * 120.00630 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46810 * 55.00222 * 18 2 1 35 35 H 1.08998 * 109.47247 * 175.00091 * 18 2 1 36 36 H 1.08002 * 122.53371 * 0.02562 * 20 19 18 37 37 H 1.08003 * 122.53757 * 180.20337 * 21 20 19 38 38 H 1.08000 * 125.20364 * 179.79352 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 1.9965 -0.4132 -3.6658 7 8 2.6281 -1.4459 -3.7794 8 7 1.6404 0.2831 -4.7635 9 6 2.0139 -0.2048 -6.0935 10 6 1.4999 0.7490 -7.1410 11 1 0.9496 1.6302 -6.8456 12 6 1.7320 0.4967 -8.4764 13 7 2.4025 -0.5759 -8.8362 14 14 1.0942 1.6786 -9.7749 15 1 2.1216 2.7156 -10.0476 16 1 0.8019 0.9308 -11.0241 17 1 -0.1477 2.3289 -9.2851 18 6 2.0400 -0.7211 1.2493 19 6 1.6413 0.0572 2.4765 20 6 0.5041 -0.1055 3.1546 21 6 0.3568 0.7227 4.2539 22 6 1.3702 1.5643 4.4633 23 16 2.6007 1.3244 3.2296 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 1.1489 0.8593 -2.3517 30 1 1.1368 1.1072 -4.6729 31 1 3.0995 -0.2711 -6.1645 32 1 1.5783 -1.1908 -6.2544 33 1 2.5662 -0.7533 -9.7756 34 1 1.6054 -1.7197 1.2952 35 1 3.1263 -0.7993 1.2057 36 1 -0.2437 -0.8306 2.8691 37 1 -0.5144 0.6925 4.8914 38 1 1.4268 2.2829 5.2676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426415903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:49 Heat of formation + Delta-G solvation = -18.121166 kcal Electronic energy + Delta-G solvation = -18850.019104 eV Core-core repulsion = 15818.485879 eV Total energy + Delta-G solvation = -3031.533226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.34225 -38.46509 -36.49988 -34.10235 -33.27491 -32.19313 -30.08498 -27.48274 -27.06360 -25.50824 -23.35532 -22.34544 -20.56406 -20.08001 -19.49339 -17.99868 -17.34702 -16.17657 -15.91674 -15.49036 -15.31945 -14.63276 -14.46506 -14.32062 -13.72091 -13.28529 -13.10090 -12.98199 -12.87306 -12.70966 -12.43158 -12.07720 -11.93198 -11.64540 -11.39063 -11.07283 -11.01681 -10.91984 -10.86800 -10.81936 -10.27679 -9.38565 -9.34024 -8.88906 -8.74451 -8.73591 -8.62960 -7.71283 -6.12770 -4.19181 0.72475 1.36537 1.74240 2.46957 3.26429 3.31553 3.34180 3.45339 4.00832 4.34666 4.39535 4.63622 4.78310 4.79976 4.89787 5.16648 5.23189 5.24231 5.27568 5.34610 5.40698 5.56112 5.73264 5.75768 5.85172 5.90161 6.02498 6.08576 6.15347 6.23825 6.91928 7.16436 7.55744 7.59106 7.60875 7.94725 8.08106 8.79960 8.98943 9.37571 9.52037 10.97524 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040578 B = 0.002474 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.857748 B =11316.045951 C =11518.670838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 H 0.078 0.922 4 C 0.147 3.853 5 N -0.757 5.757 6 C 0.692 3.308 7 O -0.602 6.602 8 N -0.730 5.730 9 C 0.267 3.733 10 C -0.541 4.541 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.045 4.045 19 C -0.161 4.161 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.221 4.221 23 S 0.095 5.905 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.391 0.609 30 H 0.386 0.614 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 4.292 26.714 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.096 0.904 4 C 0.022 3.978 5 N -0.414 5.414 6 C 0.392 3.608 7 O -0.481 6.481 8 N -0.383 5.383 9 C 0.146 3.854 10 C -0.579 4.579 11 H 0.080 0.920 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.085 4.085 19 C -0.279 4.279 20 C -0.173 4.173 21 C -0.163 4.163 22 C -0.356 4.356 23 S 0.358 5.642 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.218 0.782 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.996 3.872 26.098 26.459 hybrid contribution -2.172 0.813 -0.268 2.335 sum -4.168 4.685 25.829 26.580 Atomic orbital electron populations 1.21910 0.94387 1.02353 1.02038 1.21367 0.96936 1.00226 0.93136 0.90387 1.21066 0.99612 0.94901 0.82269 1.45139 1.62675 1.28781 1.04840 1.16153 0.80370 0.83894 0.80397 1.90867 1.46061 1.25314 1.85893 1.45715 1.59034 1.26882 1.06630 1.18967 0.96126 0.95146 0.75191 1.21232 1.36828 1.08795 0.91092 0.91978 1.24950 0.95002 0.95573 0.98553 1.69979 1.39315 1.25741 1.17281 0.86414 0.79134 0.80572 0.80761 1.20495 1.21024 1.19797 1.20165 1.01663 0.97922 0.88701 1.24496 0.98655 1.02448 1.02258 1.20148 0.98112 1.02550 0.96483 1.20179 0.99971 0.97130 0.99052 1.25596 0.98861 1.06519 1.04645 1.84413 1.22687 1.34491 1.22610 0.92341 0.92186 0.92329 0.91830 0.91978 0.77614 0.78222 0.95782 0.95773 0.92485 0.89391 0.90220 0.84286 0.84487 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.75 37.16 0.33 -0.97 16 2 C -0.10 -0.89 2.41 -90.62 -0.22 -1.11 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.15 1.86 5.06 -4.04 -0.02 1.84 16 5 N -0.76 -11.35 5.29 -65.22 -0.34 -11.70 16 6 C 0.69 14.57 8.57 -86.92 -0.74 13.83 16 7 O -0.60 -15.37 16.34 5.29 0.09 -15.29 16 8 N -0.73 -15.95 5.55 -66.42 -0.37 -16.32 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 10 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 11 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 14 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.04 -0.36 5.18 -27.89 -0.14 -0.51 16 19 C -0.16 -1.36 5.27 -36.00 -0.19 -1.55 16 20 C -0.14 -1.13 8.58 -41.21 -0.35 -1.48 16 21 C -0.13 -0.99 10.18 -41.21 -0.42 -1.41 16 22 C -0.22 -1.64 11.23 29.04 0.33 -1.31 16 23 S 0.09 0.78 23.33 -107.50 -2.51 -1.72 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 26 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.39 4.74 7.67 -40.82 -0.31 4.43 16 30 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -33.34 334.84 -9.80 -43.14 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.54 Total: 5.50 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.88 Total: 1.00 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.02 Total: -53.70 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.09 Total: -15.29 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.34 -9.80 -43.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.018 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds