Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50692 * 120.00075 * 2 1 4 4 N 1.46899 * 109.47185 * 124.44753 * 3 2 1 5 5 C 1.46900 * 110.99800 * 75.85308 * 4 3 2 6 6 C 1.50706 * 109.47355 * 195.67182 * 5 4 3 7 7 H 1.07996 * 120.00048 * 5.03224 * 6 5 4 8 8 C 1.37878 * 120.00104 * 185.02448 * 6 5 4 9 9 N 1.31522 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99816 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47034 * 90.00685 * 10 8 6 12 12 H 1.48507 * 109.47184 * 209.99868 * 10 8 6 13 13 H 1.48492 * 109.47469 * 330.00215 * 10 8 6 14 14 C 1.46898 * 111.00533 * 199.80718 * 4 3 2 15 15 C 1.50693 * 109.47076 * 66.04799 * 14 4 3 16 16 C 1.33641 * 122.75167 * 94.73541 * 15 14 4 17 17 S 1.76197 * 107.92517 * 179.97438 * 16 15 14 18 18 C 1.70976 * 90.28407 * 0.27362 * 17 16 15 19 19 C 1.50703 * 124.91799 * 179.83925 * 18 17 16 20 20 O 1.42896 * 109.47057 * 269.99943 * 19 18 17 21 21 C 1.42904 * 113.99934 * 179.97438 * 20 19 18 22 22 N 1.29034 * 110.16720 * 359.84042 * 18 17 16 23 23 H 1.08003 * 119.99617 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.00384 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99617 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47589 * 4.45248 * 3 2 1 27 27 H 1.08993 * 109.47289 * 244.45099 * 3 2 1 28 28 H 1.09006 * 109.47110 * 315.67078 * 5 4 3 29 29 H 1.08997 * 109.47472 * 75.67305 * 5 4 3 30 30 H 0.97003 * 119.99437 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47466 * 186.04980 * 14 4 3 32 32 H 1.08999 * 109.46780 * 306.04429 * 14 4 3 33 33 H 1.07995 * 126.03849 * 0.03828 * 16 15 14 34 34 H 1.08999 * 109.47055 * 30.00039 * 19 18 17 35 35 H 1.09002 * 109.47111 * 150.00488 * 19 18 17 36 36 H 1.09006 * 109.46904 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.47131 * 299.99858 * 21 20 19 38 38 H 1.08998 * 109.47080 * 60.00788 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9869 1.3374 1.1421 5 6 4.1642 0.4953 0.8913 6 6 4.8853 0.2403 2.1898 7 1 4.4639 0.5925 3.1197 8 6 6.0830 -0.4427 2.1906 9 7 6.5964 -0.8712 1.0581 10 14 6.9772 -0.7581 3.8000 11 1 6.5244 -2.0513 4.3726 12 1 8.4402 -0.8123 3.5511 13 1 6.6779 0.3383 4.7557 14 6 3.3835 2.7157 1.4597 15 6 2.1826 3.4842 1.9477 16 6 1.8892 3.6199 3.2444 17 16 0.4188 4.5826 3.3699 18 6 0.3403 4.7001 1.6660 19 6 -0.7322 5.4312 0.9003 20 8 -1.8082 4.5353 0.6145 21 6 -2.8840 5.1322 -0.1125 22 7 1.3322 4.0721 1.1305 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3580 2.1321 0.0798 27 1 2.6290 1.3981 -0.9271 28 1 3.8466 -0.4539 0.4595 29 1 4.8337 1.0041 0.1978 30 1 7.4393 -1.3514 1.0587 31 1 4.1478 2.7040 2.2368 32 1 3.7822 3.1942 0.5652 33 1 2.4542 3.2125 4.0697 34 1 -1.1020 6.2641 1.4983 35 1 -0.3175 5.8104 -0.0337 36 1 -3.6600 4.3875 -0.2898 37 1 -3.2983 5.9586 0.4650 38 1 -2.5142 5.5055 -1.0674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428861119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = 32.537545 kcal Electronic energy + Delta-G solvation = -19794.669744 eV Core-core repulsion = 16765.333245 eV Total energy + Delta-G solvation = -3029.336499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86640 -38.00053 -36.66148 -33.20562 -32.48557 -31.26664 -28.35195 -27.41180 -26.37812 -26.15278 -23.91654 -22.40599 -20.81749 -19.56071 -18.85481 -17.54167 -16.76686 -16.45319 -15.93148 -15.75659 -14.97900 -14.79929 -14.50799 -14.29661 -13.71229 -13.40763 -13.09719 -12.91209 -12.40807 -12.29346 -12.08841 -11.75117 -11.60021 -11.54624 -11.03744 -10.99246 -10.63488 -10.54760 -10.31753 -10.00266 -9.87907 -9.47014 -9.23913 -9.16008 -8.86962 -8.58430 -8.40195 -7.21972 -6.01677 -4.03382 0.81040 1.49732 1.87807 2.80270 2.95853 3.32325 3.38524 3.41315 3.65312 4.27157 4.43820 4.76119 5.04827 5.08766 5.16779 5.21409 5.29694 5.33577 5.42751 5.50113 5.64648 5.67498 5.85297 6.10508 6.20059 6.32299 6.40499 6.50065 6.59359 6.81852 7.15059 7.25898 7.35897 7.43470 7.82123 7.94916 8.10669 8.19580 8.55011 9.04903 9.60986 11.08742 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.004522 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.855655 B = 6191.018824 C = 7043.982274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 C 0.070 3.930 4 N -0.526 5.526 5 C 0.192 3.808 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.135 3.865 15 C 0.083 3.917 16 C -0.224 4.224 17 S 0.114 5.886 18 C 0.029 3.971 19 C 0.145 3.855 20 O -0.381 6.381 21 C 0.032 3.968 22 N -0.444 5.444 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.032 0.968 29 H -0.003 1.003 30 H 0.261 0.739 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.181 0.819 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 13.507 0.465 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.135 4.135 3 C -0.058 4.058 4 N -0.251 5.251 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.004 3.996 15 C -0.049 4.049 16 C -0.364 4.364 17 S 0.367 5.633 18 C -0.248 4.248 19 C 0.065 3.935 20 O -0.299 6.299 21 C -0.064 4.064 22 N -0.161 5.161 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.198 0.802 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.155 13.408 1.099 21.022 hybrid contribution 1.676 -0.304 -0.246 1.721 sum -14.479 13.103 0.853 19.546 Atomic orbital electron populations 1.23616 0.95849 1.00842 1.04609 1.22976 0.95556 0.98859 0.96087 1.21350 0.96042 0.95729 0.92714 1.62133 1.18384 1.07597 1.36986 1.19803 0.85033 0.91688 0.96795 1.21165 1.04580 1.35432 0.93364 0.91849 1.24991 0.97308 0.95904 0.96361 1.69965 1.19790 1.38598 1.25420 0.86520 0.78641 0.78692 0.83670 1.20685 1.21364 1.19865 1.20565 0.90488 0.87983 1.00539 1.20490 0.97890 0.98124 0.88368 1.26947 1.00899 1.06730 1.01795 1.83687 1.23429 1.48597 1.07596 1.26350 0.99266 1.04485 0.94748 1.20717 0.84641 0.89887 0.98283 1.88000 1.29034 1.36915 1.75939 1.22780 0.89526 0.99006 0.95128 1.66071 1.02849 1.08355 1.38858 0.89209 0.89227 0.87500 0.90003 0.94927 0.95048 0.98473 0.92937 0.88007 0.94231 0.80153 0.91259 0.90353 0.89247 0.93924 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.59 14.32 29.01 0.42 -3.18 16 2 C -0.12 -2.25 9.34 -36.03 -0.34 -2.59 16 3 C 0.07 1.42 5.29 -4.98 -0.03 1.40 16 4 N -0.53 -11.77 4.36 -238.97 -1.04 -12.81 16 5 C 0.19 5.00 4.55 -4.97 -0.02 4.97 16 6 C -0.51 -14.04 8.38 -34.44 -0.29 -14.33 16 7 H 0.06 1.73 7.71 -52.49 -0.40 1.33 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.13 2.72 5.25 -4.98 -0.03 2.69 16 15 C 0.08 1.47 5.64 -84.23 -0.48 0.99 16 16 C -0.22 -3.49 11.12 29.12 0.32 -3.17 16 17 S 0.11 1.46 23.18 -107.50 -2.49 -1.03 16 18 C 0.03 0.42 7.02 -13.45 -0.09 0.33 16 19 C 0.14 1.59 6.51 36.01 0.23 1.83 16 20 O -0.38 -4.65 10.69 -35.23 -0.38 -5.02 16 21 C 0.03 0.25 11.01 101.05 1.11 1.36 16 22 N -0.44 -7.60 8.88 -8.06 -0.07 -7.67 16 23 H 0.09 1.52 7.84 -52.48 -0.41 1.11 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.11 2.15 7.28 -52.48 -0.38 1.77 16 26 H 0.08 1.64 5.28 -51.93 -0.27 1.37 16 27 H 0.03 0.68 8.00 -51.93 -0.42 0.26 16 28 H 0.03 0.87 6.86 -51.93 -0.36 0.51 16 29 H 0.00 -0.07 8.06 -51.93 -0.42 -0.49 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.10 2.10 7.14 -51.93 -0.37 1.73 16 32 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.18 2.59 8.06 -52.49 -0.42 2.16 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -31.30 336.56 -8.03 -39.32 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.55 Total: -0.26 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.72 Total: -8.22 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.38 Total: -46.29 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.38 Total: -5.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.30 -8.03 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428861119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.860 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds