Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99769 * 2 1 4 4 C 1.53002 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47441 * 65.00047 * 4 3 2 6 6 C 1.36945 * 119.99539 * 264.43430 * 5 4 3 7 7 H 1.08001 * 119.99418 * 146.16162 * 6 5 4 8 8 C 1.38811 * 119.99876 * 326.16147 * 6 5 4 9 9 N 1.31611 * 120.00259 * 337.63239 * 8 6 5 10 10 Si 1.86801 * 119.99623 * 157.63187 * 8 6 5 11 11 H 1.48500 * 109.46998 * 89.99814 * 10 8 6 12 12 H 1.48500 * 109.47238 * 209.99946 * 10 8 6 13 13 H 1.48504 * 109.47274 * 329.99825 * 10 8 6 14 14 C 1.46490 * 120.00323 * 84.42990 * 5 4 3 15 15 C 1.50699 * 109.47217 * 90.00265 * 14 5 4 16 16 N 1.29024 * 124.91765 * 89.72041 * 15 14 5 17 17 C 1.31783 * 117.12666 * 179.81526 * 16 15 14 18 18 C 1.50700 * 122.75257 * 180.22366 * 17 16 15 19 19 C 1.52997 * 117.50260 * 163.88900 * 18 17 16 20 20 C 1.53002 * 60.00230 * 252.51294 * 19 18 17 21 21 C 1.33636 * 114.49688 * 0.47453 * 17 16 15 22 22 S 1.70983 * 124.91581 * 270.02875 * 15 14 5 23 23 H 1.08999 * 109.47048 * 60.00618 * 1 2 3 24 24 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47571 * 300.00283 * 1 2 3 26 26 H 1.08996 * 109.47464 * 60.00059 * 3 2 1 27 27 H 1.08999 * 109.46709 * 299.99280 * 3 2 1 28 28 H 1.09001 * 109.47114 * 304.99749 * 4 3 2 29 29 H 1.09003 * 109.47177 * 184.99737 * 4 3 2 30 30 H 0.97004 * 120.00174 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47491 * 330.00072 * 14 5 4 32 32 H 1.08997 * 109.47381 * 210.00574 * 14 5 4 33 33 H 1.09006 * 115.54931 * 309.60170 * 18 17 16 34 34 H 1.09006 * 117.49353 * 0.02562 * 19 18 17 35 35 H 1.08998 * 117.50107 * 145.02002 * 19 18 17 36 36 H 1.08994 * 117.49712 * 252.51332 * 20 19 18 37 37 H 1.09000 * 117.51575 * 107.47576 * 20 19 18 38 38 H 1.08000 * 126.03506 * 179.72036 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2076 -0.7848 -1.3019 7 1 3.9967 -1.3348 -2.2071 8 6 4.7127 -1.4450 -0.1902 9 7 5.3723 -0.7742 0.7302 10 14 4.4562 -3.2856 -0.0006 11 1 5.5859 -4.0108 -0.6356 12 1 4.3950 -3.6308 1.4424 13 1 3.1838 -3.6784 -0.6579 14 6 4.1708 1.3862 -2.4477 15 6 5.5919 1.8861 -2.4886 16 7 6.5763 1.2682 -3.0488 17 6 7.7582 1.8488 -2.9963 18 6 8.9926 1.2423 -3.6122 19 6 10.2012 2.1572 -3.8197 20 6 9.3749 1.6969 -5.0223 21 6 7.7733 3.0171 -2.3475 22 16 6.1346 3.3507 -1.7929 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6885 1.8463 -0.8901 28 1 3.8507 0.5686 0.8427 29 1 3.9784 2.1767 0.0902 30 1 5.7250 -1.2355 1.5072 31 1 3.4877 2.2352 -2.4201 32 1 3.9705 0.7876 -3.3362 33 1 9.1873 0.2027 -3.3485 34 1 10.1035 3.1979 -3.5103 35 1 11.1914 1.7198 -3.6923 36 1 9.8214 0.9566 -5.6860 37 1 8.7333 2.4345 -5.5045 38 1 8.6376 3.6454 -2.1904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459536637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = 51.978857 kcal Electronic energy + Delta-G solvation = -20150.600499 eV Core-core repulsion = 17122.107038 eV Total energy + Delta-G solvation = -3028.493461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.34894 -37.32503 -36.46046 -35.25992 -31.67497 -30.14253 -28.52754 -26.51201 -25.70519 -24.52223 -23.15107 -22.22517 -21.40945 -19.94603 -18.56156 -17.36954 -16.68836 -15.78407 -15.37854 -15.19620 -14.93869 -14.69965 -14.05414 -13.92563 -13.60695 -13.45601 -12.90305 -12.56825 -12.18862 -11.83514 -11.63544 -11.42826 -11.08109 -10.94569 -10.82273 -10.74640 -10.62360 -10.41501 -10.21265 -10.15639 -10.00159 -9.77866 -8.89630 -8.78317 -8.60105 -8.46034 -7.96752 -6.72887 -5.80782 -3.26967 1.47852 2.17591 2.54204 3.42510 3.46639 3.49511 3.57028 4.06282 4.53242 4.61615 4.63284 5.04584 5.16069 5.30537 5.37321 5.50809 5.57905 5.71449 5.72936 5.77333 5.87117 5.97274 6.02258 6.03360 6.09859 6.18888 6.19601 6.20256 6.43756 6.50334 6.59918 6.66891 6.90837 7.58694 7.84096 8.00210 8.46881 8.67832 9.12707 9.75104 10.26238 11.22222 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.005764 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.159633 B = 4856.612880 C = 5852.728820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.048 3.952 4 C 0.138 3.862 5 N -0.550 5.550 6 C -0.231 4.231 7 H 0.067 0.933 8 C 0.017 3.983 9 N -0.885 5.885 10 Si 0.904 3.096 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.275 1.275 14 C 0.203 3.797 15 C 0.086 3.914 16 N -0.471 5.471 17 C 0.110 3.890 18 C -0.074 4.074 19 C -0.175 4.175 20 C -0.166 4.166 21 C -0.288 4.288 22 S 0.057 5.943 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.112 0.888 29 H 0.041 0.959 30 H 0.255 0.745 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 8.337 -5.039 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.031 4.031 4 C 0.012 3.988 5 N -0.268 5.268 6 C -0.362 4.362 7 H 0.085 0.915 8 C -0.184 4.184 9 N -0.527 5.527 10 Si 0.734 3.266 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.201 1.201 14 C 0.072 3.928 15 C -0.196 4.196 16 N -0.185 5.185 17 C -0.023 4.023 18 C -0.095 4.095 19 C -0.212 4.212 20 C -0.203 4.203 21 C -0.428 4.428 22 S 0.312 5.688 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.129 0.871 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.036 8.412 -4.546 9.562 hybrid contribution 0.691 -1.003 0.099 1.222 sum 0.655 7.409 -4.447 8.666 Atomic orbital electron populations 1.22639 0.84013 1.01589 0.98495 1.88203 1.16759 1.27604 1.94857 1.23340 0.98312 0.84261 0.97222 1.21166 0.87730 0.97207 0.92730 1.44182 1.72354 1.04013 1.06244 1.19028 1.35861 0.81628 0.99667 0.91524 1.25068 0.96264 0.98156 0.98897 1.69972 1.34992 1.35647 1.12121 0.86272 0.78174 0.85258 0.76901 1.21601 1.21623 1.20068 1.20072 0.84381 0.94439 0.93880 1.29332 1.02834 0.91805 0.95605 1.65932 0.98272 1.32114 1.22200 1.19275 0.92547 0.91645 0.98859 1.20313 0.91319 0.99151 0.98710 1.22988 0.95365 1.00023 1.02867 1.22923 1.03068 1.03537 0.90816 1.26314 1.00755 1.04392 1.11342 1.83663 1.02430 1.25700 1.56973 0.95177 0.90642 0.95470 0.95242 0.95236 0.87052 0.94109 0.93546 0.92317 0.90358 0.86488 0.88753 0.88467 0.88569 0.88908 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.56 10.44 -35.23 -0.37 -7.93 16 3 C 0.05 0.92 6.28 37.16 0.23 1.16 16 4 C 0.14 3.13 5.63 -4.04 -0.02 3.11 16 5 N -0.55 -13.28 2.39 -174.61 -0.42 -13.70 16 6 C -0.23 -6.29 9.28 -15.06 -0.14 -6.43 16 7 H 0.07 1.85 7.92 -52.49 -0.42 1.43 16 8 C 0.02 0.46 4.91 -17.43 -0.09 0.38 16 9 N -0.89 -25.49 11.34 55.49 0.63 -24.86 16 10 Si 0.90 22.39 29.61 -169.99 -5.03 17.35 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.20 4.25 6.27 -5.20 -0.03 4.22 16 15 C 0.09 1.83 6.97 -13.46 -0.09 1.74 16 16 N -0.47 -10.58 10.53 -8.06 -0.08 -10.66 16 17 C 0.11 2.14 6.41 -84.23 -0.54 1.60 16 18 C -0.07 -1.20 6.30 -91.77 -0.58 -1.78 16 19 C -0.17 -2.16 9.91 -26.73 -0.27 -2.42 16 20 C -0.17 -2.15 10.23 -26.73 -0.27 -2.43 16 21 C -0.29 -5.14 10.52 29.12 0.31 -4.83 16 22 S 0.06 1.05 23.18 -107.50 -2.49 -1.45 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.11 2.94 5.34 -51.93 -0.28 2.67 16 29 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 32 H 0.08 1.64 8.04 -51.93 -0.42 1.23 16 33 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 34 H 0.09 1.10 6.79 -51.93 -0.35 0.74 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.16 2.38 6.96 -52.49 -0.37 2.01 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -31.09 335.33 -8.70 -39.79 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.61 Total: 0.49 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.38 Total: -4.09 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.13 Total: -49.22 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.37 Total: -7.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.35 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.09 -8.70 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459536637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.772 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds