Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99769 * 2 1 4 4 C 1.53002 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47441 * 65.00047 * 4 3 2 6 6 C 1.36945 * 119.99539 * 264.43430 * 5 4 3 7 7 H 1.08001 * 119.99418 * 146.16162 * 6 5 4 8 8 C 1.38811 * 119.99876 * 326.16147 * 6 5 4 9 9 N 1.31611 * 120.00259 * 337.63239 * 8 6 5 10 10 Si 1.86801 * 119.99623 * 157.63187 * 8 6 5 11 11 H 1.48500 * 109.46998 * 89.99814 * 10 8 6 12 12 H 1.48500 * 109.47238 * 209.99946 * 10 8 6 13 13 H 1.48504 * 109.47274 * 329.99825 * 10 8 6 14 14 C 1.46490 * 120.00323 * 84.42990 * 5 4 3 15 15 C 1.50699 * 109.47217 * 90.00265 * 14 5 4 16 16 N 1.29024 * 124.91765 * 89.72041 * 15 14 5 17 17 C 1.31783 * 117.12666 * 179.81526 * 16 15 14 18 18 C 1.50700 * 122.75257 * 180.22366 * 17 16 15 19 19 C 1.52997 * 117.50260 * 163.88900 * 18 17 16 20 20 C 1.53002 * 60.00230 * 252.51294 * 19 18 17 21 21 C 1.33636 * 114.49688 * 0.47453 * 17 16 15 22 22 S 1.70983 * 124.91581 * 270.02875 * 15 14 5 23 23 H 1.08999 * 109.47048 * 60.00618 * 1 2 3 24 24 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47571 * 300.00283 * 1 2 3 26 26 H 1.08996 * 109.47464 * 60.00059 * 3 2 1 27 27 H 1.08999 * 109.46709 * 299.99280 * 3 2 1 28 28 H 1.09001 * 109.47114 * 304.99749 * 4 3 2 29 29 H 1.09003 * 109.47177 * 184.99737 * 4 3 2 30 30 H 0.97004 * 120.00174 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47491 * 330.00072 * 14 5 4 32 32 H 1.08997 * 109.47381 * 210.00574 * 14 5 4 33 33 H 1.09006 * 115.54931 * 309.60170 * 18 17 16 34 34 H 1.09006 * 117.49353 * 0.02562 * 19 18 17 35 35 H 1.08998 * 117.50107 * 145.02002 * 19 18 17 36 36 H 1.08994 * 117.49712 * 252.51332 * 20 19 18 37 37 H 1.09000 * 117.51575 * 107.47576 * 20 19 18 38 38 H 1.08000 * 126.03506 * 179.72036 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2076 -0.7848 -1.3019 7 1 3.9967 -1.3348 -2.2071 8 6 4.7127 -1.4450 -0.1902 9 7 5.3723 -0.7742 0.7302 10 14 4.4562 -3.2856 -0.0006 11 1 5.5859 -4.0108 -0.6356 12 1 4.3950 -3.6308 1.4424 13 1 3.1838 -3.6784 -0.6579 14 6 4.1708 1.3862 -2.4477 15 6 5.5919 1.8861 -2.4886 16 7 6.5763 1.2682 -3.0488 17 6 7.7582 1.8488 -2.9963 18 6 8.9926 1.2423 -3.6122 19 6 10.2012 2.1572 -3.8197 20 6 9.3749 1.6969 -5.0223 21 6 7.7733 3.0171 -2.3475 22 16 6.1346 3.3507 -1.7929 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6885 1.8463 -0.8901 28 1 3.8507 0.5686 0.8427 29 1 3.9784 2.1767 0.0902 30 1 5.7250 -1.2355 1.5072 31 1 3.4877 2.2352 -2.4201 32 1 3.9705 0.7876 -3.3362 33 1 9.1873 0.2027 -3.3485 34 1 10.1035 3.1979 -3.5103 35 1 11.1914 1.7198 -3.6923 36 1 9.8214 0.9566 -5.6860 37 1 8.7333 2.4345 -5.5045 38 1 8.6376 3.6454 -2.1904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459536637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = 32.945068 kcal Electronic energy + Delta-G solvation = -20151.425866 eV Core-core repulsion = 17122.107038 eV Total energy + Delta-G solvation = -3029.318828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81448 -38.87905 -37.74410 -36.90453 -33.60809 -31.71742 -30.12864 -28.23402 -27.09458 -26.00476 -24.83360 -23.22533 -22.97005 -21.55384 -20.06276 -18.92171 -18.47596 -17.32523 -16.78609 -16.68198 -16.49889 -16.20024 -15.66623 -15.53044 -15.27258 -14.88067 -14.46245 -14.12920 -13.54492 -13.47312 -13.23710 -12.77607 -12.70442 -12.57258 -12.36302 -12.31083 -12.16397 -12.04833 -11.93059 -11.53594 -11.47538 -11.29930 -10.54616 -10.33694 -10.29864 -10.12935 -9.41900 -8.65470 -7.84014 -5.34341 -0.02487 0.69678 1.01020 1.44157 1.46187 1.56710 1.99412 2.54831 2.91362 3.20909 3.27857 3.40865 3.68702 3.94839 4.02948 4.13127 4.33687 4.43126 4.47137 4.52852 4.57030 4.65951 4.73995 4.75860 4.79493 4.82564 4.87051 4.94367 4.97118 4.98185 5.20963 5.24867 5.41674 5.69644 5.76691 6.40798 6.66585 7.12451 7.19069 7.81456 8.28892 9.15528 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.005764 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.159633 B = 4856.612880 C = 5852.728820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.139 3.861 5 N -0.565 5.565 6 C -0.232 4.232 7 H 0.050 0.950 8 C -0.028 4.028 9 N -0.914 5.914 10 Si 0.951 3.049 11 H -0.293 1.293 12 H -0.291 1.291 13 H -0.273 1.273 14 C 0.206 3.794 15 C 0.054 3.946 16 N -0.506 5.506 17 C 0.085 3.915 18 C -0.114 4.114 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.279 4.279 22 S 0.106 5.894 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.248 0.752 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 10.318 -5.662 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.013 3.987 5 N -0.284 5.284 6 C -0.363 4.363 7 H 0.068 0.932 8 C -0.225 4.225 9 N -0.559 5.559 10 Si 0.780 3.220 11 H -0.220 1.220 12 H -0.217 1.217 13 H -0.198 1.198 14 C 0.076 3.924 15 C -0.227 4.227 16 N -0.221 5.221 17 C -0.047 4.047 18 C -0.135 4.135 19 C -0.183 4.183 20 C -0.192 4.192 21 C -0.418 4.418 22 S 0.361 5.639 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.353 10.402 -5.187 11.629 hybrid contribution 0.593 -1.448 0.165 1.573 sum 0.946 8.954 -5.022 10.310 Atomic orbital electron populations 1.22826 0.81355 1.02662 1.00191 1.88127 1.19798 1.28723 1.95240 1.23181 0.95896 0.84158 0.99094 1.21066 0.90167 0.96487 0.90999 1.44104 1.73560 1.03518 1.07185 1.19001 1.34834 0.83565 0.98900 0.93180 1.25542 0.96967 1.00814 0.99188 1.70090 1.36879 1.36327 1.12568 0.85548 0.77787 0.82208 0.76469 1.22016 1.21744 1.19821 1.20014 0.85268 0.95014 0.92142 1.29082 1.02686 0.93881 0.97058 1.65962 0.99646 1.33484 1.23050 1.19760 0.92698 0.92471 0.99806 1.20345 0.92232 0.99173 1.01733 1.23132 0.94730 0.99765 1.00702 1.23005 1.02676 1.03492 0.90009 1.26813 1.01595 1.04046 1.09389 1.83358 1.02345 1.23006 1.55157 0.93631 0.90033 0.93447 0.92905 0.93492 0.90779 0.93268 0.94321 0.89203 0.91442 0.88347 0.87536 0.86280 0.86905 0.89083 0.78816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.72 10.44 -148.98 -1.56 -18.28 16 3 C 0.06 2.07 6.28 71.98 0.45 2.52 16 4 C 0.14 6.30 5.63 86.38 0.49 6.79 16 5 N -0.56 -27.55 2.39 -706.35 -1.69 -29.24 16 6 C -0.23 -12.98 9.28 84.03 0.78 -12.20 16 7 H 0.05 2.89 7.92 -2.91 -0.02 2.87 16 8 C -0.03 -1.61 4.91 84.86 0.42 -1.19 16 9 N -0.91 -54.34 11.34 21.65 0.25 -54.10 16 10 Si 0.95 47.40 29.61 68.60 2.03 49.43 16 11 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.21 8.60 6.27 85.63 0.54 9.14 16 15 C 0.05 2.28 6.97 88.52 0.62 2.90 16 16 N -0.51 -22.89 10.53 -179.40 -1.89 -24.77 16 17 C 0.08 3.24 6.41 41.52 0.27 3.50 16 18 C -0.11 -3.58 6.30 -11.54 -0.07 -3.65 16 19 C -0.15 -3.14 9.91 30.59 0.30 -2.83 16 20 C -0.15 -3.67 10.23 30.60 0.31 -3.36 16 21 C -0.28 -9.29 10.52 66.78 0.70 -8.59 16 22 S 0.11 3.68 23.18 -56.49 -1.31 2.37 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 28 H 0.07 4.01 5.34 -2.39 -0.01 4.00 16 29 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.09 3.09 8.05 -2.39 -0.02 3.07 16 32 H 0.07 2.90 8.04 -2.39 -0.02 2.88 16 33 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 34 H 0.11 2.03 6.79 -2.38 -0.02 2.01 16 35 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.19 4.98 6.96 -2.91 -0.02 4.96 16 Total: -1.00 -69.44 335.33 2.93 -66.51 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.05 Total: 13.03 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 6.05 Total: -4.95 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.33 Total: -108.12 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.56 Total: -18.28 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.31 Total: 2.37 kcal Total: -69.44 2.93 -66.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459536637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.454 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds