Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47165 * 286.27826 * 3 2 1 5 5 C 1.36937 * 120.00111 * 264.22735 * 4 3 2 6 6 H 1.08004 * 120.00082 * 199.24127 * 5 4 3 7 7 C 1.38814 * 120.00239 * 19.23590 * 5 4 3 8 8 N 1.31627 * 119.99734 * 11.61930 * 7 5 4 9 9 Si 1.86797 * 120.00108 * 191.61586 * 7 5 4 10 10 H 1.48500 * 109.46878 * 84.98369 * 9 7 5 11 11 H 1.48506 * 109.47072 * 204.97807 * 9 7 5 12 12 H 1.48497 * 109.47345 * 324.97968 * 9 7 5 13 13 C 1.46503 * 119.99850 * 84.22325 * 4 3 2 14 14 C 1.50703 * 109.47247 * 269.99776 * 13 4 3 15 15 N 1.29667 * 118.31658 * 275.61252 * 14 13 4 16 16 C 1.35891 * 122.15864 * 180.33333 * 15 14 13 17 17 C 1.39578 * 121.42348 * 179.07809 * 16 15 14 18 18 C 1.37775 * 119.72374 * 180.02562 * 17 16 15 19 19 C 1.38752 * 120.77250 * 0.02562 * 18 17 16 20 20 C 1.37943 * 120.48758 * 359.97438 * 19 18 17 21 21 C 1.39062 * 119.54423 * 0.28136 * 20 19 18 22 22 C 1.47619 * 121.84012 * 179.69957 * 21 20 19 23 23 N 1.30716 * 121.45092 * 359.97438 * 22 21 20 24 24 N 1.36068 * 118.30999 * 94.99837 * 14 13 4 25 25 H 0.97003 * 119.94984 * 0.03008 * 24 14 13 26 26 H 4.40643 * 5.51295 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.46712 * 166.28376 * 3 2 1 28 28 H 1.08992 * 109.47354 * 46.28277 * 3 2 1 29 29 H 0.96997 * 119.99766 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46948 * 150.00570 * 13 4 3 31 31 H 1.08999 * 109.46936 * 30.00395 * 13 4 3 32 32 H 1.07999 * 120.13905 * 359.97012 * 17 16 15 33 33 H 1.07988 * 119.61417 * 180.02562 * 18 17 16 34 34 H 1.07991 * 119.75286 * 180.02562 * 19 18 17 35 35 H 1.08005 * 120.23126 * 180.02562 * 20 19 18 36 36 H 0.97001 * 120.00127 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3863 1.3258 5 6 3.4748 0.5767 2.2381 6 1 4.1115 0.3276 3.0742 7 6 3.0016 1.8730 2.0881 8 7 2.0520 2.1299 1.2136 9 14 3.7123 3.2528 3.1275 10 1 4.9411 3.7779 2.4797 11 1 2.7130 4.3443 3.2514 12 1 4.0478 2.7332 4.4776 13 6 3.2590 -1.8035 1.6758 14 6 1.9689 -2.2848 2.2882 15 7 1.7803 -2.0914 3.5564 16 6 0.6494 -2.4992 4.1900 17 6 0.4705 -2.2999 5.5599 18 6 -0.6899 -2.7281 6.1667 19 6 -1.6850 -3.3567 5.4319 20 6 -1.5295 -3.5641 4.0771 21 6 -0.3625 -3.1434 3.4485 22 6 -0.1402 -3.3454 2.0032 23 7 -1.0345 -3.9309 1.2508 24 7 1.0564 -2.8887 1.4794 25 1 1.2455 -3.0001 0.5345 26 1 -1.0499 -0.0002 0.0000 27 1 3.0089 0.9992 -0.2437 28 1 3.0097 -0.7093 -0.7427 29 1 1.7211 3.0357 1.1091 30 1 4.0708 -1.9309 2.3918 31 1 3.4728 -2.3821 0.7772 32 1 1.2390 -1.8129 6.1419 33 1 -0.8266 -2.5726 7.2265 34 1 -2.5882 -3.6853 5.9243 35 1 -2.3069 -4.0534 3.5091 36 1 -0.8664 -4.0531 0.3034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491289082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = 156.640111 kcal Electronic energy + Delta-G solvation = -21710.359112 eV Core-core repulsion = 18583.252904 eV Total energy + Delta-G solvation = -3127.106208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45551 -37.70246 -36.22150 -34.88410 -32.31632 -31.70373 -31.27001 -30.45505 -29.08892 -26.96305 -26.12144 -23.93011 -23.01543 -21.46024 -20.75240 -18.78118 -18.15448 -17.57083 -17.07063 -16.63073 -15.41058 -15.21973 -14.56938 -14.48282 -14.15543 -13.68210 -13.62016 -13.53714 -13.18740 -12.54676 -12.16417 -11.79541 -11.67224 -11.40806 -11.20055 -11.05539 -11.02546 -10.85210 -10.36255 -10.15451 -9.78120 -9.41654 -9.22064 -9.04265 -9.01144 -8.55967 -8.53392 -7.33618 -7.17092 -5.94508 -3.40717 1.10091 1.29541 2.71650 3.16078 3.32087 3.32950 3.38402 3.39867 3.99519 4.19447 4.38893 4.47788 4.49981 4.68020 5.12669 5.22339 5.27771 5.39980 5.43011 5.58198 5.65387 5.70760 5.74414 6.03792 6.10146 6.29832 6.35868 6.46974 6.49621 6.66046 6.73816 6.85652 7.10035 7.18849 7.27887 7.51740 7.63981 8.06990 8.42553 8.73834 8.92155 9.00980 9.51352 9.93679 11.07043 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.006635 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.369244 B = 4219.096652 C = 5037.231549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.101 4.101 3 C 0.261 3.739 4 N -0.561 5.561 5 C -0.251 4.251 6 H 0.085 0.915 7 C 0.004 3.996 8 N -0.892 5.892 9 Si 0.915 3.085 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C 0.180 3.820 14 C 0.393 3.607 15 N -0.532 5.532 16 C 0.171 3.829 17 C -0.123 4.123 18 C -0.083 4.083 19 C -0.164 4.164 20 C -0.042 4.042 21 C -0.137 4.137 22 C 0.447 3.553 23 N -0.754 5.754 24 N -0.670 5.670 25 H 0.406 0.594 26 H 0.186 0.814 27 H 0.115 0.885 28 H 0.037 0.963 29 H 0.257 0.743 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -9.616 1.825 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.103 4.103 3 C 0.137 3.863 4 N -0.278 5.278 5 C -0.380 4.380 6 H 0.103 0.897 7 C -0.195 4.195 8 N -0.535 5.535 9 Si 0.745 3.255 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.202 1.202 13 C 0.050 3.950 14 C 0.122 3.878 15 N -0.254 5.254 16 C 0.060 3.940 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.183 4.183 20 C -0.063 4.063 21 C -0.143 4.143 22 C 0.171 3.829 23 N -0.385 5.385 24 N -0.301 5.301 25 H 0.243 0.757 26 H 0.203 0.797 27 H 0.132 0.868 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.562 -9.421 2.667 9.915 hybrid contribution -0.372 0.879 -0.906 1.316 sum -1.934 -8.542 1.761 8.933 Atomic orbital electron populations 1.24170 0.95316 1.07254 1.04597 1.24196 0.95149 0.94644 0.96345 1.18168 0.82676 1.00920 0.84577 1.44656 1.72348 0.99148 1.11670 1.19404 1.23648 0.87813 1.07164 0.89677 1.25124 0.96572 0.98927 0.98904 1.70010 1.26815 1.19998 1.36676 0.86100 0.78022 0.81344 0.80084 1.21134 1.21783 1.20197 1.20512 0.90027 0.86710 0.97739 1.25113 0.93413 0.82596 0.86714 1.68527 1.22664 1.26529 1.07701 1.18862 0.88918 0.92143 0.94061 1.20761 0.98550 1.02464 0.92480 1.21114 0.93110 0.96330 0.99697 1.20993 0.99889 1.03467 0.93975 1.20916 0.95456 0.95788 0.94108 1.19028 0.98119 1.07641 0.89481 1.21101 0.81188 0.87591 0.92991 1.70150 1.29421 1.27675 1.11293 1.44653 1.17284 1.55337 1.12854 0.75717 0.79698 0.86793 0.94517 0.93194 0.88869 0.91738 0.84964 0.85864 0.86016 0.85003 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.56 19.25 29.55 0.57 -6.00 16 2 C -0.10 -2.27 11.28 -37.12 -0.42 -2.69 16 3 C 0.26 5.54 5.45 -6.83 -0.04 5.50 16 4 N -0.56 -12.20 2.49 -177.95 -0.44 -12.64 16 5 C -0.25 -6.22 9.71 -15.06 -0.15 -6.37 16 6 H 0.09 2.10 7.84 -52.48 -0.41 1.68 16 7 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 8 N -0.89 -24.05 9.00 55.49 0.50 -23.55 16 9 Si 0.92 20.92 29.57 -169.99 -5.03 15.90 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.18 3.20 6.02 -5.19 -0.03 3.17 16 14 C 0.39 7.46 6.98 -155.16 -1.08 6.38 16 15 N -0.53 -11.08 10.20 -8.19 -0.08 -11.17 16 16 C 0.17 3.36 6.63 -84.51 -0.56 2.80 16 17 C -0.12 -2.08 10.03 -39.25 -0.39 -2.47 16 18 C -0.08 -1.16 10.00 -39.56 -0.40 -1.56 16 19 C -0.16 -2.28 10.03 -39.50 -0.40 -2.68 16 20 C -0.04 -0.68 9.66 -39.38 -0.38 -1.06 16 21 C -0.14 -2.55 5.90 -104.71 -0.62 -3.17 16 22 C 0.45 8.09 8.05 -153.55 -1.24 6.86 16 23 N -0.75 -12.86 13.51 32.61 0.44 -12.42 16 24 N -0.67 -11.45 5.40 -7.88 -0.04 -11.49 16 25 H 0.41 5.98 8.68 -40.82 -0.35 5.63 16 26 H 0.19 3.77 7.80 -54.10 -0.42 3.35 16 27 H 0.11 2.70 6.25 -51.93 -0.32 2.38 16 28 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 31 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.13 2.02 7.76 -52.48 -0.41 1.61 16 36 H 0.33 5.00 8.89 -40.82 -0.36 4.64 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -29.94 319.10 -8.99 -38.93 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -3.92 Total: 12.91 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -5.21 Total: -1.27 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: 0.37 Total: -71.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.94 -8.99 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491289082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.568 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds