Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47079 * 255.28433 * 3 2 1 5 5 C 1.36938 * 119.99924 * 270.00214 * 4 3 2 6 6 H 1.08000 * 120.00145 * 188.91697 * 5 4 3 7 7 C 1.38809 * 119.99813 * 8.91790 * 5 4 3 8 8 N 1.31620 * 120.00166 * 25.46396 * 7 5 4 9 9 Si 1.86798 * 119.99753 * 205.46221 * 7 5 4 10 10 H 1.48503 * 109.47194 * 60.00111 * 9 7 5 11 11 H 1.48503 * 109.47355 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47264 * 299.99969 * 9 7 5 13 13 C 1.46498 * 119.99780 * 90.00026 * 4 3 2 14 14 C 1.50704 * 109.47184 * 90.35422 * 13 4 3 15 15 N 1.33264 * 125.49980 * 90.01753 * 14 13 4 16 16 C 1.30843 * 109.84193 * 179.97438 * 15 14 13 17 17 N 1.34734 * 108.03437 * 0.02562 * 16 15 14 18 18 C 1.40192 * 126.84149 * 179.97438 * 17 16 15 19 19 C 1.38840 * 120.06872 * 359.72916 * 18 17 16 20 20 C 1.38120 * 119.93253 * 179.69788 * 19 18 17 21 21 C 1.38282 * 120.06606 * 0.57193 * 20 19 18 22 22 C 1.38275 * 120.13355 * 359.72854 * 21 20 19 23 23 C 1.38120 * 120.06591 * 359.97183 * 22 21 20 24 24 N 1.30747 * 125.49656 * 269.98120 * 14 13 4 25 25 H 4.40642 * 5.51375 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47411 * 135.28502 * 3 2 1 27 27 H 1.09000 * 109.47638 * 15.28503 * 3 2 1 28 28 H 0.97004 * 119.99690 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47714 * 330.34890 * 13 4 3 30 30 H 1.09001 * 109.47024 * 210.34758 * 13 4 3 31 31 H 1.08005 * 125.98493 * 180.02562 * 16 15 14 32 32 H 1.07993 * 120.03135 * 359.97412 * 19 18 17 33 33 H 1.08000 * 119.96707 * 180.32461 * 20 19 18 34 34 H 1.08000 * 119.93615 * 179.74082 * 21 20 19 35 35 H 1.08006 * 119.96760 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.03333 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3518 1.3360 5 6 3.3618 1.6629 1.6591 6 1 3.8551 1.9126 2.5868 7 6 2.9584 2.6709 0.7942 8 7 1.9625 2.4623 -0.0407 9 14 3.8290 4.3234 0.8153 10 1 5.2662 4.1299 0.4953 11 1 3.2129 5.2205 -0.1951 12 1 3.6998 4.9339 2.1628 13 6 3.3788 -0.6998 2.3262 14 6 4.8048 -1.1741 2.2135 15 7 5.8436 -0.6675 2.8770 16 6 6.9359 -1.3084 2.5484 17 7 6.6085 -2.2567 1.6489 18 6 7.4781 -3.1689 1.0349 19 6 8.8337 -3.1470 1.3340 20 6 9.6870 -4.0511 0.7321 21 6 9.1942 -4.9697 -0.1764 22 6 7.8456 -4.9899 -0.4810 23 6 6.9864 -4.0923 0.1222 24 7 5.2224 -2.1494 1.4494 25 1 -1.0500 -0.0002 -0.0001 26 1 3.0091 0.7311 -0.7230 27 1 3.0099 -0.9905 -0.2709 28 1 1.6809 3.1666 -0.6453 29 1 2.7026 -1.5351 2.1438 30 1 3.2056 -0.3040 3.3269 31 1 7.9265 -1.1119 2.9311 32 1 9.2199 -2.4267 2.0399 33 1 10.7408 -4.0379 0.9684 34 1 9.8640 -5.6729 -0.6490 35 1 7.4636 -5.7082 -1.1914 36 1 5.9330 -4.1088 -0.1158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491361999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = 214.063292 kcal Electronic energy + Delta-G solvation = -20731.078544 eV Core-core repulsion = 17606.462391 eV Total energy + Delta-G solvation = -3124.616152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92306 -39.24026 -36.19789 -34.05016 -31.78139 -31.45894 -31.32883 -30.54914 -29.33087 -26.77622 -25.83834 -23.81288 -23.01380 -21.75245 -21.18458 -19.63974 -18.29584 -17.47296 -16.36906 -16.27177 -15.66204 -15.32416 -14.90048 -14.85881 -14.27985 -13.76403 -13.64867 -13.55773 -13.39103 -12.94264 -12.37676 -12.03172 -11.82640 -11.49115 -11.40911 -11.15429 -10.97462 -10.67788 -10.54326 -10.25588 -9.92706 -9.62541 -9.39541 -9.25385 -8.88988 -8.80540 -8.36724 -8.29504 -7.17451 -5.78591 -3.14426 0.73057 1.09763 2.18591 2.43809 3.29909 3.42938 3.48114 3.51971 3.61058 4.24444 4.42158 4.43489 4.46677 4.58910 4.66424 4.85856 4.90467 5.08690 5.13843 5.35465 5.43144 5.51418 5.68574 5.75128 5.90700 6.05895 6.09401 6.24831 6.32371 6.46553 6.53399 6.68902 6.74563 6.87386 7.19825 7.29475 7.45173 7.82909 8.21495 8.48962 9.10876 9.25050 9.75299 10.17361 11.24588 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.004360 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.210057 B = 6420.040783 C = 7029.155371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.090 4.090 3 C 0.266 3.734 4 N -0.572 5.572 5 C -0.264 4.264 6 H 0.083 0.917 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.898 3.102 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.230 3.770 14 C 0.239 3.761 15 N -0.514 5.514 16 C 0.247 3.753 17 N -0.348 5.348 18 C 0.169 3.831 19 C -0.143 4.143 20 C -0.094 4.094 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.118 4.118 24 N -0.318 5.318 25 H 0.190 0.810 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.255 0.745 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.214 0.786 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.546 -14.293 0.880 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.093 4.093 3 C 0.142 3.858 4 N -0.290 5.290 5 C -0.392 4.392 6 H 0.101 0.899 7 C -0.193 4.193 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.099 3.901 14 C -0.046 4.046 15 N -0.239 5.239 16 C -0.049 4.049 17 N -0.132 5.132 18 C 0.075 3.925 19 C -0.164 4.164 20 C -0.113 4.113 21 C -0.154 4.154 22 C -0.115 4.115 23 C -0.138 4.138 24 N -0.143 5.143 25 H 0.208 0.792 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.230 0.770 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.930 -14.237 0.545 19.240 hybrid contribution 0.601 1.140 -0.069 1.290 sum 13.531 -13.097 0.476 18.837 Atomic orbital electron populations 1.24145 0.95274 1.08545 1.04035 1.24083 0.95059 0.93443 0.96710 1.17882 0.83051 0.97128 0.87786 1.44053 1.73550 1.02374 1.09045 1.19259 1.33142 0.81041 1.05776 0.89882 1.24797 0.97063 0.97904 0.99541 1.70189 1.23797 1.33250 1.25671 0.86426 0.79847 0.83663 0.77359 1.21237 1.21784 1.20833 1.19200 0.83515 0.92097 0.95326 1.26582 0.99664 0.88822 0.89524 1.70570 0.97585 1.27769 1.27982 1.26098 1.00524 0.87680 0.90618 1.47902 1.06607 1.26108 1.32606 1.17647 0.88284 0.91038 0.95567 1.20826 0.90770 1.01776 1.03075 1.20943 0.99526 0.94594 0.96243 1.21203 0.95638 0.99644 0.98919 1.21093 0.93270 0.98107 0.99017 1.21018 1.01513 0.94913 0.96353 1.78129 0.86741 1.23908 1.25562 0.79234 0.88629 0.94146 0.93450 0.91362 0.89956 0.77009 0.85217 0.85129 0.85613 0.85185 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.01 19.25 29.55 0.57 -6.44 16 2 C -0.09 -2.25 11.46 -37.13 -0.43 -2.68 16 3 C 0.27 6.58 5.46 -6.83 -0.04 6.55 16 4 N -0.57 -14.32 2.47 -177.95 -0.44 -14.77 16 5 C -0.26 -7.23 9.69 -15.06 -0.15 -7.38 16 6 H 0.08 2.28 7.95 -52.49 -0.42 1.86 16 7 C 0.01 0.16 4.88 -17.43 -0.08 0.07 16 8 N -0.89 -25.39 9.19 55.49 0.51 -24.88 16 9 Si 0.90 22.07 29.62 -169.99 -5.04 17.04 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.23 4.92 6.29 -5.19 -0.03 4.89 16 14 C 0.24 4.90 7.72 -156.80 -1.21 3.69 16 15 N -0.51 -10.06 11.19 -11.89 -0.13 -10.19 16 16 C 0.25 3.82 11.98 -90.37 -1.08 2.74 16 17 N -0.35 -5.66 3.82 -11.80 -0.05 -5.71 16 18 C 0.17 2.25 6.70 -83.59 -0.56 1.69 16 19 C -0.14 -1.44 9.47 -39.40 -0.37 -1.81 16 20 C -0.09 -0.77 10.04 -39.61 -0.40 -1.17 16 21 C -0.14 -1.10 10.04 -39.55 -0.40 -1.50 16 22 C -0.10 -0.92 10.04 -39.61 -0.40 -1.31 16 23 C -0.12 -1.48 9.68 -39.40 -0.38 -1.86 16 24 N -0.32 -6.17 12.06 32.43 0.39 -5.78 16 25 H 0.19 3.70 7.80 -54.09 -0.42 3.27 16 26 H 0.10 2.59 6.35 -51.93 -0.33 2.26 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 31 H 0.21 2.15 7.10 -52.48 -0.37 1.77 16 32 H 0.13 1.01 6.81 -52.49 -0.36 0.65 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.14 1.88 7.74 -52.48 -0.41 1.48 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -33.11 322.80 -8.81 -41.92 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.96 Total: 2.02 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.96 Total: -4.53 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.28 Total: -61.32 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.04 Total: 17.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.11 -8.81 -41.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491361999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.984 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 222.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds