Wall clock time and date at job start Tue Mar 31 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48499 * 109.46886 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46990 * 119.99618 * 3 2 1 7 7 C 1.38807 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00091 * 196.33987 * 7 2 1 9 9 N 1.36939 * 120.00422 * 16.33436 * 7 2 1 10 10 C 1.44674 * 118.55219 * 207.22734 * 9 7 2 11 11 C 1.54944 * 109.52271 * 269.05780 * 10 9 7 12 12 C 1.47539 * 109.73076 * 290.51858 * 11 10 9 13 13 N 1.46265 * 114.37734 * 62.22494 * 12 11 10 14 14 C 1.39839 * 111.00393 * 148.54891 * 13 12 11 15 15 C 1.38871 * 120.06676 * 253.19809 * 14 13 12 16 16 C 1.38138 * 119.99282 * 180.02562 * 15 14 13 17 17 C 1.38265 * 120.13389 * 0.02562 * 16 15 14 18 18 C 1.38491 * 120.13098 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.99724 * 180.02562 * 18 17 16 20 20 C 1.38480 * 120.00392 * 0.02562 * 18 17 16 21 21 F 1.35103 * 120.06636 * 180.27039 * 20 18 17 22 22 C 1.44759 * 110.63760 * 272.25014 * 13 12 11 23 23 C 1.47782 * 118.54212 * 27.20548 * 9 7 2 24 24 H 0.97002 * 119.99817 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46229 * 149.03762 * 10 9 7 26 26 H 1.09002 * 109.44917 * 29.07063 * 10 9 7 27 27 H 1.09004 * 109.42320 * 170.44410 * 11 10 9 28 28 H 1.09000 * 109.38457 * 50.57824 * 11 10 9 29 29 H 1.08995 * 108.50680 * 300.95492 * 12 11 10 30 30 H 1.09011 * 108.50029 * 183.48989 * 12 11 10 31 31 H 1.07995 * 120.00316 * 0.02562 * 15 14 13 32 32 H 1.08003 * 119.93960 * 180.02562 * 16 15 14 33 33 H 1.07994 * 119.93912 * 180.02562 * 17 16 15 34 34 H 1.09010 * 109.43321 * 214.22375 * 22 13 12 35 35 H 1.09003 * 109.43539 * 334.09069 * 22 13 12 36 36 H 1.08996 * 109.06556 * 258.66924 * 23 9 7 37 37 H 1.09006 * 109.06694 * 17.60324 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0576 -1.2209 0.2637 9 7 1.3671 -2.3643 -0.3325 10 6 1.8596 -3.6089 0.2166 11 6 2.9017 -4.2250 -0.7505 12 6 2.2278 -4.6928 -1.9768 13 7 1.5728 -3.6355 -2.7465 14 6 1.5899 -3.9270 -4.1140 15 6 2.4366 -3.2276 -4.9640 16 6 2.4518 -3.5165 -6.3147 17 6 1.6250 -4.5010 -6.8234 18 6 0.7785 -5.2018 -5.9806 19 9 -0.0279 -6.1636 -6.4804 20 6 0.7587 -4.9168 -4.6256 21 9 -0.0627 -5.6035 -3.8014 22 6 0.2193 -3.4267 -2.2774 23 6 0.2003 -2.2915 -1.2364 24 1 -0.4850 0.8401 -0.0004 25 1 1.0290 -4.3029 0.3455 26 1 2.3279 -3.4195 1.1825 27 1 3.3944 -5.0669 -0.2640 28 1 3.6446 -3.4708 -1.0101 29 1 1.4779 -5.4332 -1.6985 30 1 2.9672 -5.1775 -2.6145 31 1 3.0830 -2.4579 -4.5690 32 1 3.1110 -2.9723 -6.9749 33 1 1.6398 -4.7246 -7.8798 34 1 -0.4189 -3.1576 -3.1192 35 1 -0.1518 -4.3441 -1.8205 36 1 -0.7128 -2.3654 -0.6458 37 1 0.2108 -1.3328 -1.7550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595506605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:51 Heat of formation + Delta-G solvation = -17.484303 kcal Electronic energy + Delta-G solvation = -22974.700538 eV Core-core repulsion = 19389.354542 eV Total energy + Delta-G solvation = -3585.345996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.44717 -48.52848 -39.71897 -37.61349 -34.84182 -32.56541 -30.80085 -30.30181 -29.86450 -26.83750 -25.11530 -23.52111 -22.80720 -22.42450 -20.26461 -19.54845 -17.99274 -17.20791 -17.04776 -16.51704 -16.20968 -15.47559 -15.27382 -14.90538 -14.80590 -14.52342 -14.22397 -13.83148 -13.57726 -13.15338 -12.84199 -12.46757 -12.39349 -12.09621 -11.90757 -11.66751 -11.32787 -11.11925 -10.86120 -10.69525 -10.37904 -10.11818 -10.01612 -9.74976 -9.60129 -8.88563 -8.75463 -8.35260 -7.96332 -6.55478 -5.69460 -3.10757 0.91726 0.97193 3.35048 3.43411 3.49133 3.50628 3.74534 4.05718 4.35598 4.58310 4.69617 4.77572 5.10466 5.23428 5.41108 5.49270 5.58386 5.66912 5.76834 5.83149 5.93590 6.04383 6.08921 6.17880 6.21107 6.29508 6.44110 6.51341 6.59410 6.69019 6.87939 7.06239 7.18027 7.61296 7.63752 7.75858 7.90296 8.56914 9.32989 10.00450 10.46503 11.38839 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.005428 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.494288 B = 5157.395928 C = 5551.059256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.062 0.938 9 N -0.580 5.580 10 C 0.160 3.840 11 C -0.147 4.147 12 C 0.081 3.919 13 N -0.473 5.473 14 C 0.106 3.894 15 C -0.081 4.081 16 C -0.095 4.095 17 C -0.142 4.142 18 C 0.068 3.932 19 F -0.134 7.134 20 C 0.027 3.973 21 F -0.128 7.128 22 C 0.032 3.968 23 C 0.191 3.809 24 H 0.252 0.748 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -9.569 -11.734 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.079 0.921 9 N -0.301 5.301 10 C 0.031 3.969 11 C -0.188 4.188 12 C -0.044 4.044 13 N -0.193 5.193 14 C 0.010 3.990 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.161 4.161 18 C 0.048 3.952 19 F -0.113 7.113 20 C 0.004 3.996 21 F -0.106 7.106 22 C -0.096 4.096 23 C 0.066 3.934 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.000 -9.063 -11.573 15.234 hybrid contribution -0.401 -0.146 -0.227 0.483 sum 3.599 -9.209 -11.800 15.394 Atomic orbital electron populations 1.70044 1.05205 1.25368 1.54708 1.24978 0.95191 0.98199 1.01127 0.86420 0.78909 0.83706 0.78003 1.21169 1.21843 1.21070 1.19104 0.92405 0.85169 1.40920 0.92055 1.43465 1.33839 1.01771 1.50983 1.20679 0.93820 0.88272 0.94093 1.21688 1.00593 1.00208 0.96311 1.20907 0.97404 0.90529 0.95573 1.58657 1.19847 1.43497 0.97278 1.19231 0.94893 0.92426 0.92446 1.21199 0.98131 0.98790 0.91881 1.21030 0.98385 0.96676 0.95279 1.21026 0.97235 0.97729 1.00090 1.17684 0.95145 0.91794 0.90619 1.91502 1.71241 1.60959 1.87602 1.18774 0.96900 0.96766 0.87191 1.91505 1.70102 1.77817 1.71212 1.23069 0.86016 1.00983 0.99507 1.21031 0.89061 0.94907 0.88449 0.93774 0.95519 0.93393 0.92573 0.91109 0.94876 0.93206 0.83384 0.84134 0.84096 0.92476 0.94403 0.95160 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.30 11.11 55.49 0.62 -25.68 16 2 C 0.00 0.08 4.84 -17.43 -0.08 0.00 16 3 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.66 9.41 -15.06 -0.14 -6.81 16 8 H 0.06 1.65 7.88 -52.48 -0.41 1.23 16 9 N -0.58 -14.31 2.56 -171.77 -0.44 -14.75 16 10 C 0.16 3.33 5.70 -3.99 -0.02 3.31 16 11 C -0.15 -2.59 6.02 -28.34 -0.17 -2.76 16 12 C 0.08 1.39 4.52 -6.80 -0.03 1.36 16 13 N -0.47 -8.72 4.12 -175.73 -0.72 -9.45 16 14 C 0.11 1.70 4.25 -83.69 -0.36 1.34 16 15 C -0.08 -1.08 9.97 -39.38 -0.39 -1.47 16 16 C -0.09 -0.98 10.04 -39.61 -0.40 -1.38 16 17 C -0.14 -1.53 10.02 -39.48 -0.40 -1.93 16 18 C 0.07 0.94 7.30 -39.40 -0.29 0.65 16 19 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 20 C 0.03 0.42 6.55 -39.21 -0.26 0.16 16 21 F -0.13 -2.19 14.67 2.25 0.03 -2.15 16 22 C 0.03 0.65 4.07 -4.44 -0.02 0.63 16 23 C 0.19 4.60 5.01 -2.80 -0.01 4.59 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.05 1.00 7.97 -51.93 -0.41 0.59 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.03 0.57 6.97 -51.93 -0.36 0.21 16 30 H 0.05 0.77 7.66 -51.92 -0.40 0.37 16 31 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.06 1.10 7.31 -51.92 -0.38 0.72 16 35 H 0.04 0.74 6.50 -51.93 -0.34 0.41 16 36 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 37 H 0.08 2.04 6.44 -51.93 -0.33 1.70 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -29.61 303.88 -8.22 -37.83 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.72 Total: -2.91 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.57 Total: -2.31 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.55 Total: -49.88 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.61 -8.22 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595506605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.342 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds