Wall clock time and date at job start Tue Mar 31 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00014 * 2 1 4 4 C 1.53000 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46995 * 64.99765 * 4 3 2 6 6 C 1.46494 * 120.00229 * 274.74396 * 5 4 3 7 7 C 1.50703 * 109.46868 * 262.75060 * 6 5 4 8 8 H 1.08006 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00170 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00429 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46728 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46936 * 120.00119 * 11 9 7 14 14 H 1.48494 * 109.47541 * 240.00386 * 11 9 7 15 15 C 1.34781 * 119.99878 * 94.74017 * 5 4 3 16 16 O 1.21536 * 119.99606 * 3.25475 * 15 5 4 17 17 C 1.47995 * 120.00298 * 183.25663 * 15 5 4 18 18 N 1.32809 * 119.74742 * 353.98959 * 17 15 5 19 19 C 1.31435 * 121.66618 * 179.97438 * 18 17 15 20 20 C 1.38684 * 120.97637 * 359.97438 * 19 18 17 21 21 C 1.38443 * 119.39846 * 0.25750 * 20 19 18 22 22 C 1.38975 * 118.46674 * 359.50472 * 21 20 19 23 23 F 1.35100 * 120.50205 * 180.24720 * 22 21 20 24 24 H 1.09006 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47080 * 299.99579 * 1 2 3 26 26 H 1.09004 * 109.47400 * 59.99754 * 1 2 3 27 27 H 1.08996 * 109.46843 * 59.99853 * 3 2 1 28 28 H 1.09001 * 109.47259 * 300.00198 * 3 2 1 29 29 H 1.08999 * 109.46946 * 305.00017 * 4 3 2 30 30 H 1.08999 * 109.47080 * 184.99806 * 4 3 2 31 31 H 1.08995 * 109.47468 * 22.75453 * 6 5 4 32 32 H 1.09003 * 109.47114 * 142.75687 * 6 5 4 33 33 H 0.96999 * 120.00200 * 179.97438 * 10 9 7 34 34 H 1.08000 * 119.51538 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.29803 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.77095 * 179.72351 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0057 -0.8950 -1.3763 7 6 5.4038 -1.3926 -1.1138 8 1 6.1911 -0.6917 -0.8781 9 6 5.6777 -2.7425 -1.1735 10 7 4.7190 -3.5960 -1.4600 11 14 7.4105 -3.3594 -0.8475 12 1 8.2983 -2.2069 -0.5493 13 1 7.3960 -4.2856 0.3131 14 1 7.9147 -4.0760 -2.0464 15 6 4.3529 1.3365 -2.2911 16 8 4.3844 2.5454 -2.1694 17 6 4.7286 0.7124 -3.5793 18 7 4.8082 -0.6101 -3.6724 19 6 5.1379 -1.2039 -4.7976 20 6 5.4166 -0.4668 -5.9388 21 6 5.3511 0.9151 -5.8880 22 6 4.9951 1.5178 -4.6873 23 9 4.9137 2.8630 -4.5929 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1766 0.0889 31 1 3.3213 -1.3352 -0.6512 32 1 3.7015 -1.1808 -2.3832 33 1 4.9117 -4.5457 -1.5024 34 1 5.1917 -2.2820 -4.8343 35 1 5.6868 -0.9661 -6.8575 36 1 5.5681 1.5111 -6.7622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:33 Heat of formation + Delta-G solvation = -60.605605 kcal Electronic energy + Delta-G solvation = -22915.568704 eV Core-core repulsion = 19315.980038 eV Total energy + Delta-G solvation = -3599.588665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.50606 -39.99224 -38.48706 -37.28371 -34.88694 -32.51973 -32.18018 -30.69237 -29.46964 -26.90698 -25.96223 -24.43781 -23.19187 -22.67611 -22.08149 -19.23786 -17.23424 -17.06188 -16.58062 -16.32654 -15.95918 -15.70686 -15.43490 -14.98043 -14.85708 -14.47246 -14.25209 -13.85329 -13.57647 -13.07150 -12.85601 -12.68966 -12.21206 -12.11113 -11.82335 -11.67775 -11.46929 -11.26146 -10.85026 -10.79756 -10.52332 -10.08443 -9.62528 -9.54152 -9.39606 -9.28464 -8.61101 -8.56265 -8.03375 -7.54580 -5.92944 -3.91292 0.98270 1.44336 3.30279 3.34773 3.39466 3.44956 3.75141 4.17593 4.30307 4.40992 4.51096 4.78302 4.96690 5.09890 5.21088 5.41567 5.42935 5.51397 5.60865 5.67730 5.69154 5.72339 5.89571 5.97082 6.05500 6.15469 6.26103 6.38431 6.90029 6.97983 7.52075 7.71769 7.87995 8.03171 8.30100 8.40237 8.41804 8.93395 9.12255 9.67100 11.14792 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.009867 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.790392 B = 2836.923720 C = 4703.016032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.049 3.951 4 C 0.116 3.884 5 N -0.565 5.565 6 C 0.228 3.772 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.882 3.118 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.561 3.439 16 O -0.566 6.566 17 C 0.053 3.947 18 N -0.350 5.350 19 C 0.080 3.920 20 C -0.132 4.132 21 C -0.136 4.136 22 C 0.093 3.907 23 F -0.116 7.116 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.258 0.742 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 5.450 -5.443 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.293 5.293 6 C 0.109 3.891 7 C -0.536 4.536 8 H 0.067 0.933 9 C -0.133 4.133 10 N -0.528 5.528 11 Si 0.710 3.290 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.212 1.212 15 C 0.347 3.653 16 O -0.447 6.447 17 C -0.087 4.087 18 N -0.060 5.060 19 C -0.079 4.079 20 C -0.152 4.152 21 C -0.162 4.162 22 C 0.070 3.930 23 F -0.094 7.094 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.183 0.817 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.174 5.250 -4.597 8.131 hybrid contribution 1.066 0.325 -0.611 1.271 sum -3.108 5.575 -5.208 8.238 Atomic orbital electron populations 1.22682 0.82214 1.02435 0.99075 1.88089 1.18620 1.27207 1.95173 1.23004 0.95080 0.85082 0.99732 1.21449 0.91273 0.99918 0.88098 1.48193 1.59986 1.10578 1.10500 1.20191 0.97125 0.70975 1.00774 1.21362 0.94887 0.91826 1.45507 0.93263 1.24735 0.96234 0.96622 0.95724 1.69954 1.31389 1.02088 1.49395 0.86709 0.85684 0.78785 0.77804 1.20141 1.21189 1.21165 1.17742 0.78336 0.85752 0.83445 1.90723 1.56797 1.13684 1.83463 1.21571 1.02603 0.90466 0.94048 1.68999 1.05832 1.07044 1.24136 1.23235 0.95439 1.01622 0.87612 1.22288 0.99032 0.93337 1.00576 1.21483 1.02100 0.95849 0.96794 1.18752 1.01026 0.78276 0.94938 1.91555 1.93137 1.28122 1.96635 0.89810 0.94761 0.94716 0.93062 0.93539 0.89374 0.89075 0.94072 0.90173 0.93236 0.81749 0.84203 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.84 9.22 -35.23 -0.32 -7.16 16 3 C 0.05 0.82 6.28 37.16 0.23 1.05 16 4 C 0.12 2.22 5.90 -4.04 -0.02 2.20 16 5 N -0.56 -12.73 2.46 -176.12 -0.43 -13.16 16 6 C 0.23 5.70 4.51 -5.20 -0.02 5.67 16 7 C -0.50 -13.28 7.99 -34.44 -0.28 -13.55 16 8 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 11 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 15 C 0.56 12.84 7.58 -12.26 -0.09 12.75 16 16 O -0.57 -13.47 14.83 5.33 0.08 -13.39 16 17 C 0.05 1.12 6.63 -82.96 -0.55 0.57 16 18 N -0.35 -7.43 4.99 -9.76 -0.05 -7.48 16 19 C 0.08 1.37 11.18 -17.56 -0.20 1.18 16 20 C -0.13 -1.77 10.11 -39.34 -0.40 -2.16 16 21 C -0.14 -1.93 10.16 -39.23 -0.40 -2.33 16 22 C 0.09 1.71 7.31 -38.82 -0.28 1.43 16 23 F -0.12 -2.24 15.57 2.25 0.04 -2.20 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.68 8.11 -51.93 -0.42 1.26 16 30 H 0.09 1.66 7.24 -51.93 -0.38 1.28 16 31 H 0.04 1.11 6.85 -51.93 -0.36 0.76 16 32 H 0.08 2.09 5.21 -52.68 -0.27 1.81 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 34 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -31.66 313.77 -5.60 -37.26 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.35 Total: -0.93 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.99 Total: 10.09 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.25 Total: -44.38 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.25 Total: -20.55 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.66 -5.60 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.346 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds